mRNA_H-paniculata_contig1878.4665.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1878.4665.1
Unique NamemRNA_H-paniculata_contig1878.4665.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1878.4665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1878contigH-paniculata_contig1878:12690..18697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size431
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1878.4665.1prot_H-paniculata_contig1878.4665.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1878 12690..18680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.4897392-CDS-H-paniculata_contig1878:12689..129881622929445.4897392-CDS-H-paniculata_contig1878:12689..12988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1878 12690..12988 -
1691480864.3384352-CDS-H-paniculata_contig1878:12689..129881691480864.3384352-CDS-H-paniculata_contig1878:12689..12988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1878 12690..12988 -
1622929445.5083797-CDS-H-paniculata_contig1878:18565..186801622929445.5083797-CDS-H-paniculata_contig1878:18565..18680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1878 18566..18680 -
1691480864.348695-CDS-H-paniculata_contig1878:18565..186801691480864.348695-CDS-H-paniculata_contig1878:18565..18680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1878 18566..18680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.5494454-UTR-H-paniculata_contig1878:18680..186971622929445.5494454-UTR-H-paniculata_contig1878:18680..18697Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1878 18681..18697 -
1691480864.3574877-UTR-H-paniculata_contig1878:18680..186971691480864.3574877-UTR-H-paniculata_contig1878:18680..18697Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1878 18681..18697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1878.4665.1

>prot_H-paniculata_contig1878.4665.1 ID=prot_H-paniculata_contig1878.4665.1|Name=mRNA_H-paniculata_contig1878.4665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MTNVAQTTNSMVRSSSRVRPRPSSWKCGSNISVRIVISALVMSRSGQQPN
IISADGFGPPRIPTPEHNRRSHTCSDTIRGIWEAQATAGTTARFSSTVEH
RTTSGKAATAATLLVPSPDVTTTTATADSDNNNTTGSG
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mRNA from alignment at H-paniculata_contig1878:12690..18697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1878.4665.1 ID=mRNA_H-paniculata_contig1878.4665.1|Name=mRNA_H-paniculata_contig1878.4665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6008bp|location=Sequence derived from alignment at H-paniculata_contig1878:12690..18697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGTCTATAGTTCATGACGAATGTTGCCCAAACCACCAACAGCATG
GTCCGATCTTCATCAAGAGTGCGCCCCAGGCCATCATCATGGAAATGTGG
TAGTAACATTAGCGTCCGCATCGTGATCTCAGGTGACCAGAGTCTGAAAG
TGTAGCCCGAGATATGGGCTTGGGGTAGTTTTGTGGACGTCTATTGCTTT
TGCGTGCAGGAATTCAGATGTTGATGAAATATAGCATCACTGTTCTGGGT
TAGCTGGTATGCTAAGTCGGTCTAACTCAAGAGAATCAAGGGCAATATCG
CGCTAGAGAGCGGCGTACTTCTTCGCGGGTTAACTCTTCACGAGATCCCA
ATCGCTTGGGAGGTGTCTGTGGTATGCAATGTTGGAGATAGGTCTTCAAT
AATCCAAGTGCCAACACTGTTAACTGTCGCAACCAATCCGATGGCCTGGT
ATCATGATGTTCAAATACCTTACATAGTACATAAAGACAGTACTTTACTG
CACATGGTCCTGCAAAGGACAGGATGACATCAATTCCAGATTTCAGACCC
AACAGACAGTTGTTGTGCGTGCGTCTCGCCTACAGTACAAAAGATCGTGC
AGTCTACGTTCAGTCCGTTTACCCGGTGATAGTCGGTGCCAGACTTCTCC
TTGATGTCGATTGTGATTGTCATGATGGTGTTGCTGTGGATGTGCTTTGC
TGTTAGTAAGGTCTGGTCCTGCCTGTACCTGTTGAATGAAGATGACGCTC
TGTCCATGTCGTCTAGGATACAGGAGGAATTCGTCCTGGAATTGAGCACT
ACCCACTAGACTGATGGTACTACAGTATACAGTAATAGGGAGCTAATATT
TGTCTTGTGATGATTCAAAACTCGAATCATGTGCACCAAGATACGGGGGG
CAGTCTGGACAATGCACAGCACCGGGTGTAACCGCTAAATAGTAGGAACC
AAGTGACATTCAGCATATGGTTGCCGTCCTGTCTCCCGCAGCGAAAACCT
AAGTTCAGTGCAATATAATAGAGTGTACAGTAATTGGAACGATGTCGAGG
AAATAACTTGTCTCAAATTCAAGTACATGAGCGATTCACGATTAGCTCCA
TCGACTGGGGTTGGCGTGTAAACTTATACAATCTGTACTTGTACACTTCA
TACTATATATGTCGAGTGAGCACTAGGCGCACCGAAGCTGTGTTTGCGGG
GTTGCCTCCTCAATTCTGGAAAATTTCAAATAGTTATGTGATGTGTCAGA
GTTGGTAGTGAGCACAGATAGTGGAGTAGTTGATTGTACGGTATCTAATA
CAACGGTGATACACTGGGTACGTGGGTACCCTGATTCAAGGCAGCCGTTG
TTACTGCGGTACTATTAAATGCTTAGATTTTACCGAGGGTCTTCGCGATA
ACGTTTCTTGACTATTGACCAAACGGTATGGTGGCAGAAAACCGCGGTAA
TAGCGGTAAATATATACAACGACTAGTTACAGTTGACCGTCGGTTTACGG
TAATTGCATGGTAGTGAACGGTATGGGAGCGGTCAACGTCTGTAAATGGA
CGGTATTGAATGGTACGGCAGTAGCTGACTGCGGTAACTCTACAGTCTCA
GCACGGTAATGGCCTACCACGATAAAACTACCACGAAGACCCGATTTTTT
CACCAGACATCGTATGTAAAACGTAATGTAATTGTCCTTGAATGTAAAAA
TATGTTAATTATTGTAGGTTCTAGTATATGTAAAAAACTTGAAGCATGAT
TTGGTTACACAACCAACGTGACATGGCAACTCCTTAAAAACACGAGTGGA
GCCAGAAAAACAGTCCCAAACAATAGTACGTGCTTCACGCAGCGTTGCAC
CTTTCTTGTACAACCATTCGTGCGAACTATACAATACGTCATGTATTTGG
TTAAGGACCTCGCGGATAGCAAAGGCGAGAAATGCAAAATAGAAAACAGC
ATCGAAGATATCTTACCGCATTTGGCCACAAACTATTCTGGAATAATTAC
GAAAGTAGAACAGAAATCACCTACTCGTGAGCCACAACACAACTACAATA
CGGCAAGGTCAACATGTTTACCAGCAACAGCCTGCTGCACTGCTCTGCCA
TCATCTTATGCATTCTGACAACCTGGTTGTACTCCTTGATCTATGTAGCG
CTGGTTCAAGCGGAGAAACTCTATCCTTTTGACCCTGAAGCTGGCCATAG
TGGTGTGTGGATTAACGATCAAAAGCGCAAGCGCAGAGAACTTGCGCTCA
GCTTGGCAATTAGTCAACTCGATCCCTTGGTACAGGTGGGCAATGAGAGC
CAAGTGCGGCAGTTCTGCCTTGGCGACGATCTTTCCTGTCTGCGGGCACA
CGGTGGGAGATGTCCTCTACGATGTCATCGTTCACACTAATCATGTTATG
GCCACCACGACGCTGTTGCCTGCCCACCACAACCCTCCGTCAGACCACGT
GTTTTTTTTAAAGACAAAATATGTCATCTCTATCGCTCAGACCCGCAAGT
GACGAAGAGAAATTCGAAATTGGTTGTTTTTTTAGGCTGGGTCCTGCGTT
CATAGCTGACACATTTTGGGTGCATCCACGTCTGTTTCGTACGCTATTTT
CTGCACTGTACCTTATCTTACGGTACGGTACGTAGATTCTACAGTGTTGT
TACGGTCGGTAACGCATTTTGACGGCACTTGTGGAATTTCACGGTAAATG
TACGATATGTTGTGGTTGAATTTTTTGCGTGTCACCGCGGTATTTATACT
GTAACGGTAGCTGCAAATCCCCACAGTTTTACCTCGGTCATTTCACCACC
GTAAAATTACCGCGAAGATCCCTGGATTTAACCGTTTGAATTATAGAAAA
ACAAATGTCGACAGCGGGAATAACGTTTTTTCATGAAGCCCGACGTCGAA
TTACTGATCACATCATCACTCGTTCTGTCATGTTCCGACTGCGACGACTA
CTCTGGCGGGCTGCTAGCTGCTGTGTCTGTGGGTACCGTCACGCATAAAG
GACACCGTACATGCAGCGGCTATCGCTCGCTAGGGATTTCTGGGGAGATG
CCCGTGCCTGCCAACCTAGCTCAATCTCTTCATTATGTTGCTGCTACCCC
AGTGTCATAGGGCAGATAAACATGCATGGTGCTACAACAGTACACCAACT
GTAGCGCATGTACTCTGCTTGACTGACTGTCTGTTCCTTCCGTGGCCGCG
CGCAACTCTGAGCTGTATCATGCTGCTTGCGCTGTGTAGACGACGATGGA
ATCAATGCGTGTGCTGTAGTCTATCAGTTGTATTTACTTCATATCAACTG
TCAAGCACATGGTGTTGCAGCTGCAGCAAATCAGCCGTGGACCTGCAATG
GTTGAAATTAAAATGGTCACTATTTACCTCTTTGGCTCCTAGAGTCACTG
TTTGTTCCATGGTATGTTTCTCATTTCATGTTCCACGCTTGTATTTATCT
GGTGATACAGTGTTGTGATATCGCCCCCGCCGAAACAAATTTCGTCCGTC
CCAAGTCGGTGCTCCCCCCCTCAAAATGCACCCCTCCCCCCCCCCACCAC
CAATCTGGGACACGAGACTGTCAAATCATACTGCAGGCCCTCAGGAATCA
ATTGGTTAAGGCAAGTTAAATTAGCTTGTCCACCAAAACAACGTCCTATA
CATTTGCACTTATATCGAGGTGAATGTAGACAGACCATTTCCCATATAAG
GAGGTGATAAAAAGATGGATTTGTGGCGCAATTGCAAAAATTTCGTTTCT
TCAAACTCGCCTGTCCATTGATGCTTGTAGGAAAGCTGAACGCTGTCTGG
CCATACCTTTTCAGTTTTAGCCTGAAACCGATTAGACCTAACCTTAGAAG
ATGGCGTGCCAAAAGGGGTCAGACACATGTAAAAGGGGTCAAACATGAAA
ATAAATATATACATATATATAGGGCTGTTTATGTGGTGTTGTTTTTGCAC
AGCAATTTGCTCGGTGCTCTCGGCAGCGTTGCCGGATAAGTTAGCACGCC
ATAATCATGAACGCTGGGGTAGATTTTCCCTCACCGCTTGACATAACCTC
CCCAGATTTTGACGGCGATTTCTCCACAAAACAAATTCACAAACTTGCAG
GAGCATAGTGGCTCTCCACACACAGCCCTTCGTTATCTTCCTGCTGCTGT
GTTTGTGAAATCATGATCACGAAAGACAGGGCGCCACACACGTATGTACT
CGCGTGTCAAGCAGATACCTGTCAATCACCCACGGGACTGTGAGATATCC
CCGTGGTCCCAAAATGTCACACACTAGGCACCCGGGAGTCAAGTGGTAAA
CGGCTAGCACCTTCATCGGACGCTACCGGACGGGGCTTTTGACCTGGGGT
CCGAGCTTCCTACACGGCTTAGAGCCCGCCACAGAATCATGCAGATTCCT
GTGCTGTTCATTGAGGAAATGGATATACTATACCCCAATTCATGGTATTT
TATATAACCCCGAACACACAAAGCCATCACTATATATATTTTTTTTCAAA
ACCAATCATACGGCACGTAGACCACTTCTTATCGCAACGTTTTTGGTGAC
AATACTTCCCCGTCCCCCAAAATGGGCTTAGGCGGCGCAAAGCTCACCGA
GTTTTTGTTTCAAGAACAGATTGAAGTTGGTGCGAAATGGGTCGCATGTT
TGTGTAGAAGATATAATATTGTCCATTAATTTGATTGCAACTCCCAAGCT
TCGAGTTGCCGTTCTAGCCCATTATTGCCAGTGCTGTCCATTTCCACCTT
CTTTTTTTTGTCTCCCATAGGTAGACCAAATTACACGGAAAGTATCACCG
CTGTAGTCGCGGCCGGTTTTGCAACCATGATGATGCCCCTCCTGCCGAAA
CCGAAGCCGGACCGCTTTCGTCGGAGTTTGTAGAGGCCTCACGTTGAACC
ACTAGAGAAGGATCTGGCTGCACTTTCGCCTTCACTTCCCCTCCCCGCGG
TTCACCTTGACCATGGCCTCATCCTTCGCCACGATTGTCCCGTTCTTGGG
ATGATCTTGACGAAGGACGAGACCGCGGCCAAGTTGGAGCGCGGGGAGGG
GAAGCGAAGGCGAAGGTCCAGCTAGACCACTCTCCAGCGGTTCTGCGTCG
GGCACCAACAGCCGTCGGTTAAAGTGGTCCGACTCCGGTTCCGGCGGGGG
GGCATCATCATGGTGCCAAAACCGGCCGTCACCACGGTGGTGGTAGTTTC
GGTGTATTTTGGTCCACCTGTTGGAAAAAAACAGGTGTAACTGGGCAATA
GTGCTGGAAATGGCAACCTCGCAGCTTGGGAGCTACAGCAAGTGGACAAA
CAACATGTCTTCTACACACACATACATGCGACCAATTTCTCGCCAAACTC
CTATTCGTTTGTGAGCTCACCAAACTCGGCGAGTTGTGCGCCGCCGAAGA
CCACTTTGGGGAAAAAAATCAATGTCATCGAAATAGGCCGCGAGAAGAAA
CGAGTCTTACCTTCCCAAGTATTGCATACAAGAGATGTTCCCTTCGCCGC
GAAGTTTGTATTTTTTTTCAATCCCCCATCAATTCATGGTGAAGTTTTAG
AATGAAAATGCTGAGCGCTTCCATTGGTTGTTAAATCCATTTGAGTGTGC
CTCTAAAAGTCATCCACGTTGCCCCCCCCCCCCGCCTCCGCCTGCACCCG
CACCCCTCGTTATCTCAAATCTCTTTCCAAAACCCACTTTTTTGTCTTCC
TGCAAAAAGCTTTGGTGATGTCACGCAGCGGACAGCAGCCCAACATCATC
TCTGCCGATGGTTTCGGACCACCGCGGATACCCACACCAGAACACAATCG
CCGTAGCCACACGTGCAGCGATACTATCAGAGGAATCTGGGAAGCACAGG
CTACTGCTGGTACTACCGCCAGGTTCAGCTCTACAGTAGAGCACCGAACA
ACATCGGGCAAGGCAGCAACAGCAGCAACGCTTCTAGTGCCATCGCCTGA
CGTTACCACGACTACTGCTACTGCTGATAGTGACAATAATAATACAACGG
GTAGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1878:12690..18697-

>mRNA_H-paniculata_contig1878.4665.1 ID=mRNA_H-paniculata_contig1878.4665.1|Name=mRNA_H-paniculata_contig1878.4665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig1878:12690..18697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAATGTTGCCCAAACCACCAACAGCATGGTCCGATCTTCATCAAG
AGTGCGCCCCAGGCCATCATCATGGAAATGTGGTAGTAACATTAGCGTCC
GCATCGTGATCTCAGATGACGAATGTTGCCCAAACCACCAACAGCATGGT
CCGATCTTCATCAAGAGTGCGCCCCAGGCCATCATCATGGAAATGTGGTA
GTAACATTAGCGTCCGCATCGTGATCTCAGCTTTGGTGATGTCACGCAGC
GGACAGCAGCCCAACATCATCTCTGCCGATGGTTTCGGACCACCGCGGAT
ACCCACACCAGAACACAATCGCCGTAGCCACACGTGCAGCGATACTATCA
GAGGAATCTGGGAAGCACAGGCTACTGCTGGTACTACCGCCAGGTTCAGC
TCTACAGTAGAGCACCGAACAACATCGGGCAAGGCAGCAACAGCAGCAAC
GCTTCTAGTGCCATCGCCTGACGTTACCACGACTACTGCTACTGCTGATA
GTGACAATAATAATACAACGGGTAGTGGGCTTTGGTGATGTCACGCAGCG
GACAGCAGCCCAACATCATCTCTGCCGATGGTTTCGGACCACCGCGGATA
CCCACACCAGAACACAATCGCCGTAGCCACACGTGCAGCGATACTATCAG
AGGAATCTGGGAAGCACAGGCTACTGCTGGTACTACCGCCAGGTTCAGCT
CTACAGTAGAGCACCGAACAACATCGGGCAAGGCAGCAACAGCAGCAACG
CTTCTAGTGCCATCGCCTGACGTTACCACGACTACTGCTACTGCTGATAG
TGACAATAATAATACAACGGGTAGTGGG
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