mRNA_H-paniculata_contig18724.4639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A6H5L8H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H6_9PHAE) HSP 1 Score: 137 bits (345), Expect = 5.010e-35 Identity = 76/125 (60.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query: 16 QVYVTDGVPSLALSIGDGTAANSSSWESMPS----IKYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLE--PVYLRSLPEPGTQGSLGWNSDIKISNEVLLVERV 372
+VYV GVPSL L++ D A + + PS I YANYT+GNG++ELLF Y VE D TDRLDY SP+A+AL APF +I+AK+T PVYLRSLPEPG + SLGWN+DI IS+EVLLVERV
Sbjct: 41 EVYVMYGVPSLLLNVRDTAATDDNETTIAPSDGTGIAYANYTAGNGTSELLFAYTVERGDATDRLDYSSPAADALWAPFGAIVAKDTTLGWPVYLRSLPEPGAEDSLGWNTDIVISDEVLLVERV 165
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI) HSP 1 Score: 132 bits (332), Expect = 2.870e-33 Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query: 16 QVYVTDGVPSLALSIGDGTAANSSSWESMPS----IKYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLE--PVYLRSLPEPGTQGSLGWNSDIKISNEVLLVERV 372
+VYV GVPSL L++ D A + + PS YANYT+GNG++ELLF Y VE D TDRLDY SP+A+AL APF +I+AK+T PVYL SLPEPG + SLGWN+DI IS+EVLLVERV
Sbjct: 688 EVYVMYGVPSLLLNVRDTAATDDNETTIAPSGGTGTAYANYTAGNGTSELLFAYTVERGDATDRLDYSSPAADALWAPFGAIVAKDTTLGWPVYLWSLPEPGAEDSLGWNTDIVISDEVLLVERV 812
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: UPI000710C60A (DUF4347 domain-containing protein n=1 Tax=Stenotrophomonas humi TaxID=405444 RepID=UPI000710C60A) HSP 1 Score: 54.7 bits (130), Expect = 4.710e-6 Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 112 KYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKI 342
+ A+Y G+GS+ L+F+Y V+A D++ LDY SP+A +L+ +I E + V +L PGT GSLG N D+ I
Sbjct: 451 RLASYVGGSGSSSLMFSYTVQAGDISADLDYASPAALSLNGG--TIKNAEGADAVL--TLVTPGTAGSLGANKDLVI 523
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: Q6MMK5_BDEBA (Putative RTX family exoprotein n=4 Tax=Bdellovibrio bacteriovorus TaxID=959 RepID=Q6MMK5_BDEBA) HSP 1 Score: 54.7 bits (130), Expect = 4.740e-6 Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1
Query: 112 KYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKI 342
+ NY+SG+G+T+LLFTY+V+ D T LDY S +A AL+ ++ L +LP PGT SL +I +
Sbjct: 1028 RVVNYSSGSGTTQLLFTYVVQTGDETPDLDYTSTTALALNGG----TMRDALSNNATLTLPAPGTANSLAGTKNIAV 1100
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A4Q6YEQ7_9GAMM (DUF4347 domain-containing protein (Fragment) n=1 Tax=Pseudoalteromonas sp. CO325X TaxID=1777262 RepID=A0A4Q6YEQ7_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 6.330e-6 Identity = 42/108 (38.89%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 25 VTDGVPSLALSIG--DGTAANSSSWESMPSIKYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKI 342
VT GVPSL L G D T A Y+SG+G+T L+FTY V+A D + LDY + SA AL+ S A +L PG GSLG N + I
Sbjct: 1223 VTGGVPSLTLETGATDRTVA---------------YSSGSGTTTLMFTYTVQAGDTSADLDYTTTSALALNGAQVSDSAGNNAS----LTLATPGAAGSLGANKALVI 1311
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A7S4JS32_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JS32_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 6.510e-6 Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 1
Query: 16 QVYVTDGVPSLALSIGDGTAANSSSWESMPSIKYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSA--NALSAPFCSILAKETLEPVYLRSL--PEPGTQGSLGWNSDIKISN 348
+V V G+P L L++G+G + A Y+SG+GST L+F Y V A+D + LDY+ + + + E+ P L P PG++GSL ++S+I I N
Sbjct: 1445 EVVVVAGMPELYLNVGNGGRSG-----------IARYSSGSGSTALIFEYSVSANDFSVDLDYIDIHSLRQGMDGAKAGRIRLESTLPTLDADLVLPSPGSEGSLRYSSNIAIDN 1548
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A2E6EH67_9ALTE (Fibronectin type-III domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E6EH67_9ALTE) HSP 1 Score: 53.9 bits (128), Expect = 8.770e-6 Identity = 41/125 (32.80%), Postives = 55/125 (44.00%), Query Frame = 1
Query: 1 FSHQRQVYVTDGVPSLALSIGDGTAANSSSWESMPSIKYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKISNEVLLVERVN 375
FS V G P L L G + A+YTSG+GS++L F+Y V+A D + LDYV+ ++ AL+ S A +L PG SLG N I + V V VN
Sbjct: 361 FSETVTVNTGGGTPQLTLETGTTD-------------RIASYTSGSGSSQLTFSYTVQAGDTSADLDYVATNSLALNGGTISDAAANNAN----LTLASPGAANSLGANKAIVVDGVVPTVSSVN 468
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A0P8C8B3_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Methanoperedens sp. BLZ1 TaxID=1719120 RepID=A0A0P8C8B3_9EURY) HSP 1 Score: 53.1 bits (126), Expect = 1.530e-5 Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 112 KYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKISNEVLL 360
+ A Y+SG+G+ L F Y+V+++D++ LDYVS +A L+ + A + +L PGT GSLG N I I ++++
Sbjct: 475 RQATYSSGSGTNTLTFNYVVQSEDISSDLDYVSTTAFTLNGGTINDSANNAA----VLTLAPPGTAGSLGANKAIVIYTQLII 553
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A0P8A4F1_9EURY (Cna protein B-type domain protein (Fragment) n=1 Tax=Candidatus Methanoperedens sp. BLZ1 TaxID=1719120 RepID=A0A0P8A4F1_9EURY) HSP 1 Score: 53.1 bits (126), Expect = 1.620e-5 Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 112 KYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKISNEVLL 360
+ A Y+SG+G+ L F Y+V+++D++ LDYVS +A L+ + A + +L PGT GSLG N I I ++++
Sbjct: 669 RQATYSSGSGTNTLTFNYVVQSEDISSDLDYVSTTAFTLNGGTINDSANNAA----VLTLAPPGTAGSLGANKAIVIYTQLII 747
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Match: A0A822IKF4_9EURY (Serine-aspartate repeat-containing protein D n=6 Tax=Methanosarcinales TaxID=94695 RepID=A0A822IKF4_9EURY) HSP 1 Score: 53.1 bits (126), Expect = 1.650e-5 Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 112 KYANYTSGNGSTELLFTYIVEADDVTDRLDYVSPSANALSAPFCSILAKETLEPVYLRSLPEPGTQGSLGWNSDIKISNEVLL 360
+ A Y+SG+G+ L F Y+V+++D++ LDYVS +A L+ + A + +L PGT GSLG N I I ++++
Sbjct: 689 RQATYSSGSGTNTLTFNYVVQSEDISSDLDYVSTTAFTLNGGTINDSANNAA----VLTLAPPGTAGSLGANKAIVIYTQLII 767 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18724.4639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18724.4639.1 >prot_H-paniculata_contig18724.4639.1 ID=prot_H-paniculata_contig18724.4639.1|Name=mRNA_H-paniculata_contig18724.4639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp FSHQRQVYVTDGVPSLALSIGDGTAANSSSWESMPSIKYANYTSGNGSTEback to top mRNA from alignment at H-paniculata_contig18724:4551..4934+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18724.4639.1 ID=mRNA_H-paniculata_contig18724.4639.1|Name=mRNA_H-paniculata_contig18724.4639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig18724:4551..4934+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18724:4551..4934+ >mRNA_H-paniculata_contig18724.4639.1 ID=mRNA_H-paniculata_contig18724.4639.1|Name=mRNA_H-paniculata_contig18724.4639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig18724:4551..4934+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |