mRNA_H-paniculata_contig18658.4615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18658.4615.1
Unique NamemRNA_H-paniculata_contig18658.4615.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18658.4615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18658contigH-paniculata_contig18658:304..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size481
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.056171-UTR-H-paniculata_contig18658:303..4271622929440.056171-UTR-H-paniculata_contig18658:303..427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18658 304..427 +
1691480862.2100604-UTR-H-paniculata_contig18658:303..4271691480862.2100604-UTR-H-paniculata_contig18658:303..427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18658 304..427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.0691497-CDS-H-paniculata_contig18658:427..7841622929440.0691497-CDS-H-paniculata_contig18658:427..784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18658 428..784 +
1691480862.218628-CDS-H-paniculata_contig18658:427..7841691480862.218628-CDS-H-paniculata_contig18658:427..784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18658 428..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18658.4615.1prot_H-paniculata_contig18658.4615.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18658 428..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18658.4615.1

>prot_H-paniculata_contig18658.4615.1 ID=prot_H-paniculata_contig18658.4615.1|Name=mRNA_H-paniculata_contig18658.4615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MVTWTHNHPTMTSTWTLTACHHFAHLVPIRHALVAVALRRSRGLLLAFNT
CRSLVLLLYLPFLVPTVRHPSSRNGNIYVVAESAALVSCSLYLVEIQSQL
PPISRLYVPSAEKNPTTHP
back to top

mRNA from alignment at H-paniculata_contig18658:304..784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18658.4615.1 ID=mRNA_H-paniculata_contig18658.4615.1|Name=mRNA_H-paniculata_contig18658.4615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=481bp|location=Sequence derived from alignment at H-paniculata_contig18658:304..784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACACAAAACATTCACTTTTGTAGGCAATGCACCCCCCTTGCTCAACAT
AATTCTATATCAAGTTTGTGCGGTAAACAATAAAGGGAAATTGCGACATT
ACCCAACTATTGTACCTGAGGGGGATGGTAACATGGACGCATAATCATCC
AACCATGACCTCCACCTGGACACTTACAGCGTGCCACCATTTCGCACATC
TAGTTCCAATTAGGCACGCATTAGTGGCTGTTGCTCTGCGACGCAGCAGA
GGCTTGCTTTTGGCCTTCAACACATGCCGATCGTTGGTTTTGCTTTTATA
TCTTCCGTTTTTGGTACCGACTGTCAGACATCCGTCCTCCAGAAATGGAA
ATATTTATGTGGTAGCTGAGAGCGCAGCACTCGTATCTTGTAGTCTGTAT
CTCGTGGAGATCCAATCCCAGCTGCCGCCCATTTCTCGTTTATATGTGCC
ATCTGCAGAAAAAAACCCGACCACCCACCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18658:304..784+

>mRNA_H-paniculata_contig18658.4615.1 ID=mRNA_H-paniculata_contig18658.4615.1|Name=mRNA_H-paniculata_contig18658.4615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig18658:304..784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAACATGGACGCATAATCATCCAACCATGACCTCCACCTGGACACT
TACAGCGTGCCACCATTTCGCACATCTAGTTCCAATTAGGCACGCATTAG
TGGCTGTTGCTCTGCGACGCAGCAGAGGCTTGCTTTTGGCCTTCAACACA
TGCCGATCGTTGGTTTTGCTTTTATATCTTCCGTTTTTGGTACCGACTGT
CAGACATCCGTCCTCCAGAAATGGAAATATTTATGTGGTAGCTGAGAGCG
CAGCACTCGTATCTTGTAGTCTGTATCTCGTGGAGATCCAATCCCAGCTG
CCGCCCATTTCTCGTTTATATGTGCCATCTGCAGAAAAAAACCCGACCAC
CCACCCAATGGTAACATGGACGCATAATCATCCAACCATGACCTCCACCT
GGACACTTACAGCGTGCCACCATTTCGCACATCTAGTTCCAATTAGGCAC
GCATTAGTGGCTGTTGCTCTGCGACGCAGCAGAGGCTTGCTTTTGGCCTT
CAACACATGCCGATCGTTGGTTTTGCTTTTATATCTTCCGTTTTTGGTAC
CGACTGTCAGACATCCGTCCTCCAGAAATGGAAATATTTATGTGGTAGCT
GAGAGCGCAGCACTCGTATCTTGTAGTCTGTATCTCGTGGAGATCCAATC
CCAGCTGCCGCCCATTTCTCGTTTATATGTGCCATCTGCAGAAAAAAACC
CGACCACCCACCCA
back to top