mRNA_H-paniculata_contig1005.46.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1005.46.1 vs. uniprot
Match: D8LHQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ5_ECTSI) HSP 1 Score: 394 bits (1011), Expect = 9.150e-111 Identity = 223/456 (48.90%), Postives = 282/456 (61.84%), Query Frame = 1
Query: 1282 NDGATYYVEVKSSTGKTSTYWNGALWTLAVDIPVFGQSKKHDFVYGRGTITQEEQMEEKTAGYTVERGCYYLWTTQGTRPFDVEWSISVDGVDIPNGSGGGADRHTFGVGGALCGLSTCYRQCYNDWQDESTDECASYGDLLAPPTEPAGAKCTCTEEEELALRLTCLNTEKCDNRSQCYLINDAVAEVSTSHVIKVCTYMTIEGSTVDTQSAEQAIAIWLNLDAQYVELVLVNGKSPVTYSRRNRRRILLKDHEDQYYETDGPRVEHGRG----KKNQRSARNRRLQSKNFRRFEYHIIAPGSADRSNILETIKNGVRDLNTVLGSQEEGSGLQNAEAYTATYSVVEENVASAEVPSVSIAGTGIGGVG----NTVVVEATSAP--ADSE--HFTRSAQFIVGAGLVVVVSVVLSFVACIVCNMKRKEKKAFRENNAPVGGQPKPVEFVDPWGSL 2613
N G Y VE+ +STG TST WNGA + L V V GQ+ + GTI E T +ERGCY L+TT GTRP+DV W + V G + GGG D HTFG+GGALCG+S CYR CY + D DEC S+GDLLAP EPAGA CTCT++E++ LR+ CL + C++RSQCYL+ DA AE++ + +++ TY+T+ + V E A+A WL+LD YVEL VNGKS T + RRR++ R+ G G K QR ARNRRLQ+ F+R E+ II D +I T+ GVR LNTVL +Q E S + EAYTA YS+ E VA+A+ P VSIAG+G GG G V V AT AP AD + FTR QF+VGAGLVVVVS LS VACIVC+MKR+++K F+ N G+PKPV +VDPWGS+
Sbjct: 687 NTGGNYQVEIVASTGDTSTNWNGAAYRLEVGTVVPGQTLPSSSLLAFGTIN-EGDTSPWTQTLNLERGCYVLYTTAGTRPYDVVWQVEVGGEVYQSAEGGGQDYHTFGLGGALCGMSDCYRLCYEEHDDRDADECKSFGDLLAPSDEPAGANCTCTQDEQIDLRIECLGRDDCESRSQCYLLGDAAAEITMAPTLRIVTYVTVVTTNVYVDGMETAVAQWLDLDPAYVELARVNGKSTETSTEVTRRRLISAGENXXXXXXXXVRLGSGWGWSDEKGGQRRARNRRLQTATFKRLEFRIIGDSDNDFPDITSTLSEGVRALNTVLSAQNEESEVSEVEAYTAEYSINSEYVATADTPGVSIAGSG-GGTGVDEEGEVNVLATEAPEVADDDIGDFTRQTQFLVGAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQGEDGRPKPVAYVDPWGSV 1140
BLAST of mRNA_H-paniculata_contig1005.46.1 vs. uniprot
Match: A0A6H5L752_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L752_9PHAE) HSP 1 Score: 219 bits (558), Expect = 9.180e-55 Identity = 108/226 (47.79%), Postives = 141/226 (62.39%), Query Frame = 1
Query: 1297 YYVEVKSSTGKTSTYWNGALWTLAVDIPVFGQSKKHDFVYGRGTITQEEQMEEKTAGYTVERGCYYLWTTQGTRPFDVEWSISVDGVDIPNGSGGGADRHTFGVGGALCGLSTCYRQCYNDWQDESTDECASYGDLLAPPTEPAGAKCTCTEEEELALRLTCLNTEKCDNRSQCYLINDAVAEVSTSHVIKVCTYMTIEGSTVDTQSAEQAIAIWLNLDAQYVELV 1974
Y VE+ +STG TS + L V V GQS + GTI E + T +ERGCY L+TT GTRP+DV W + V G N +GGG D H+FG+GGALCG+S CYR CY + D DEC S+GDLLAP EPAGA CTCT++EE+ LR+ CL + C++RSQCYL+ DA AE++T+ +++ Y+TI + V E A+A WL+LD YV V
Sbjct: 683 YQVEIVASTGDTSXXXXXXXYRLEVGTVVPGQSLPSSSLLAFGTIN-EGDISPWTQTLNLERGCYVLYTTAGTRPYDVVWQVEVGGKVYQNAAGGGKDYHSFGLGGALCGMSDCYRLCYEEHDDRDADECKSFGDLLAPSDEPAGANCTCTQDEEIDLRIECLGRDDCESRSQCYLLGDAAAEITTAPTLRIVMYVTIVTTNVYVDGMETAVAQWLDLDPAYVTFV 907
BLAST of mRNA_H-paniculata_contig1005.46.1 vs. uniprot
Match: A0A6H5LPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPC9_9PHAE) HSP 1 Score: 153 bits (387), Expect = 3.390e-38 Identity = 89/167 (53.29%), Postives = 110/167 (65.87%), Query Frame = 1
Query: 2143 FRRFEYHIIAPGSADRSNILETIKNGVRDLNTVLGSQEEGSGLQNAEAYTATYSVVEENVASAEVPSVSIAGTGIGGVG----NTVVVEATSAPA----DSEHFTRSAQFIVGAGLVVVVSVVLSFVACIVCNMKRKEKKAFRENNAPVGGQPKPVEFVDPWGSLIK 2619
F+R E+ II D +I T+ GVR LNTVL +Q E SG+ EAYTA YS+ ENVA+A+ P VSIAG+G GG G V+V AT AP D FTR QF+VGAGLVVVVS LS VACIVC+MKR+++K F+ N G+PKPV +VDPWGS+ +
Sbjct: 11 FKRLEFRIIGDSDNDFPDITSTLSEGVRALNTVLAAQNEESGVSEVEAYTAEYSINSENVATADTPGVSIAGSG-GGTGVDEEGEVIVLATEAPEAADDDMGDFTRQTQFLVGAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQSEDGRPKPVAYVDPWGSVAR 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1005.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1005.46.1 >prot_H-paniculata_contig1005.46.1 ID=prot_H-paniculata_contig1005.46.1|Name=mRNA_H-paniculata_contig1005.46.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=723bp MGLRRRATAIVAGVSVVTAASTVGAGGAAPATVGSARRQNEEGRAQQQQEback to top mRNA from alignment at H-paniculata_contig1005:681..30079+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1005.46.1 ID=mRNA_H-paniculata_contig1005.46.1|Name=mRNA_H-paniculata_contig1005.46.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=29399bp|location=Sequence derived from alignment at H-paniculata_contig1005:681..30079+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1005:681..30079+ >mRNA_H-paniculata_contig1005.46.1 ID=mRNA_H-paniculata_contig1005.46.1|Name=mRNA_H-paniculata_contig1005.46.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4338bp|location=Sequence derived from alignment at H-paniculata_contig1005:681..30079+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |