mRNA_H-paniculata_contig10722.459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10722.459.1
Unique NamemRNA_H-paniculata_contig10722.459.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10722.459.1 vs. uniprot
Match: A0A835ZH34_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH34_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.780e-17
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 3 
Query:   33 MSTRGGG--RMFLAAGLPFVAFIVGGSYILSQFVSGQVDVKDRR--SKSIRQFNLEEEHRKTMQEFH--EDYEIKRIPRPDEQ 263
            MS RGGG   +FL AGLPF+ F+ GGS  LS  V+G V+ +DR+  S+S+RQF+L+EEHRK  Q+F   ED++I RIPRP E+
Sbjct:    1 MSRRGGGSNNLFLRAGLPFIVFVAGGSLFLSYVVTGHVETRDRKRQSQSLRQFDLQEEHRKLQQQFASGEDFKIVRIPRPGEK 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10722.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZH34_9STRA8.780e-1755.42Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10722contigH-paniculata_contig10722:6055..7775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog112098.XP_008618246.1
KEGG koko:K18182
KEGG Pathwayko04714,map04714
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Cytochrome c oxidase assembly protein COX16
EggNOG OGs2CJGE@1,2S9GJ@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_003470.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons3
Model size852
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10722.459.1prot_H-paniculata_contig10722.459.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10722 6620..7743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.968918-UTR-H-paniculata_contig10722:6054..66191622928775.968918-UTR-H-paniculata_contig10722:6054..6619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10722 6055..6619 -
1691480615.3831177-UTR-H-paniculata_contig10722:6054..66191691480615.3831177-UTR-H-paniculata_contig10722:6054..6619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10722 6055..6619 -
1622928776.0273113-UTR-H-paniculata_contig10722:7743..77751622928776.0273113-UTR-H-paniculata_contig10722:7743..7775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10722 7744..7775 -
1691480615.4236155-UTR-H-paniculata_contig10722:7743..77751691480615.4236155-UTR-H-paniculata_contig10722:7743..7775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10722 7744..7775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928775.9808092-CDS-H-paniculata_contig10722:6619..67151622928775.9808092-CDS-H-paniculata_contig10722:6619..6715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10722 6620..6715 -
1691480615.3944151-CDS-H-paniculata_contig10722:6619..67151691480615.3944151-CDS-H-paniculata_contig10722:6619..6715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10722 6620..6715 -
1622928775.9992607-CDS-H-paniculata_contig10722:7206..72751622928775.9992607-CDS-H-paniculata_contig10722:7206..7275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10722 7207..7275 -
1691480615.4038029-CDS-H-paniculata_contig10722:7206..72751691480615.4038029-CDS-H-paniculata_contig10722:7206..7275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10722 7207..7275 -
1622928776.0133574-CDS-H-paniculata_contig10722:7653..77431622928776.0133574-CDS-H-paniculata_contig10722:7653..7743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10722 7654..7743 -
1691480615.415349-CDS-H-paniculata_contig10722:7653..77431691480615.415349-CDS-H-paniculata_contig10722:7653..7743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10722 7654..7743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10722.459.1

>prot_H-paniculata_contig10722.459.1 ID=prot_H-paniculata_contig10722.459.1|Name=mRNA_H-paniculata_contig10722.459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MSTRGGGRMFLAAGLPFVAFIVGGSYILSQFVSGQVDVKDRRSKSIRQFN
LEEEHRKTMQEFHEDYEIKRIPRPDEQRPPEANV*
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mRNA from alignment at H-paniculata_contig10722:6055..7775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10722.459.1 ID=mRNA_H-paniculata_contig10722.459.1|Name=mRNA_H-paniculata_contig10722.459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1721bp|location=Sequence derived from alignment at H-paniculata_contig10722:6055..7775- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGGTGTTGCAACTCACTGTACGATTTTGGGATGTCTACTCGCGGAGGA
GGTCGCATGTTCCTAGCTGCGGGCCTGCCTTTCGTGGCCTTCATCGTAGG
CGGTTCGTACATACTATCACAGGTAAAGTCCAAATATACCTTCCAGATCA
GTGCTGCAAAATAGAGTCAGCTCGTGTGTCTGTTGGAATACACGGTTCGC
ACAAGTTCACCAGTGACTGCCCCCTTTGGTGCATTGGTTTGATCGAATTG
AGAGTATTGCGTCTTCTCGGTTGTGTTGCCCCAAAACCTTTTTCTGCCTG
GCAAGAATTGGTGGGTTTTTGCTGTCACTTAAGATGGTTTATCGCAGTAT
GGCTTGCCTTGAGCATGATGACTTGAGCATGATGACTTGAGCATGTTTAT
TCTTCATATCTCACGTCGGTCATTTTACCAAGTGTCATTTTACCAAAGTA
TCAACTGACTCCGGTGCTCATCTGCTACCCCGATCTGCTTCTGGTCGCAG
TTTGTCTCAGGACAAGTAGACGTCAAAGACAGGCGGAGCAAGAGCATTCG
CCAATTCAACTTGGAAGAGGTGAGTGTGCACTGCCATTTTGCCTTGCCTG
GTTTTGCGAACACTTGCAAGATTGAAGGTGGGTAAATTTACTCTGGATTC
AAACGCGGAATATGCAACAGTGATGTTGAAAGTACGGACAGTGGTGGGTC
CGACTTTTCAGATCGGACGTTCGGCAATTAAACCCCGAATTGGAGTCAAA
TTCGCTTGAATTTTTTGCGATCAGTAGATGTTGGCAAGAGGAATAGTTCG
TGCGTTTGACATGTGTTATGCTTTTCGGTTATACCGTCACGCCACAAGAG
AAAAACGTATTTTTGGGACTAAATTACTTTAGATAACACCTCTAAAAAAC
ACATGCATGGCGCATGTGTATTTATCAAGGTACTCCTCGAATCATGAACG
TTTGGCGTTTTCCATGTTTGTGAGGTGCAAACGTGTGCTGCATGGATTTC
AACTGCTCCGTTGGCTGCAACCTGCCACTACTGTAAATACATGTATTGTT
TGATACCCAGGAACATCGGAAAACCATGCAAGAATTTCACGAGGACTACG
AAATCAAGAGGATACCGCGACCTGACGAGCAAAGGCCACCAGAGGCGAAC
GTCTAGATGATAGAGTAATAGGAGCTACTCTACTGTAAGGATATTTTTTC
TATGGATGTCCACTGGGTGGTGTGATACAGGAACATGTTTTCCTGGAAAG
GGCTGCTTCGGAACCAAAGAATGAATTACTAACGTAATGGTGTTTATCGC
GGTCATGTGAAGGTGTAAGTAAGCTACAGTGGGTGGCCCAGTTTAAGGCC
GGTATATATCAGCCCAAGAAAACGCCCTTATTGACCGATCGGCCTTATTA
TGGTTTTTCCTCCTTCGCGGCCGGTCGGCCTTAAAGTGGACAAAAAACAG
GATGGTCACGCCTCGCACATCATGTGTTACATCCGGTCATTCGCTGTACG
TAGGGACAGGTGGTGAAGTGATCAGTGCTGTGTCCCAATACTGGGTTGTC
ACCTAAACAAAGCATGGAGGTCACGGAAGAGTGGTAATTGCTGGTGTTGT
TGCATTGTTGATGTAACACCCACCGATAACATGTAACGCGTACCGCCACT
ATCAGTGCTTGACTGCCATCGGCAAAAACGCAAAAATGTTTGACTGCGGA
GGACCAACACAACAAGATGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig10722:6055..7775-

>mRNA_H-paniculata_contig10722.459.1 ID=mRNA_H-paniculata_contig10722.459.1|Name=mRNA_H-paniculata_contig10722.459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig10722:6055..7775- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACTCGCGGAGGAGGTCGCATGTTCCTAGCTGCGGGCCTGCCTTT
CGTGGCCTTCATCGTAGGCGGTTCGTACATACTATCACAGATGTCTACTC
GCGGAGGAGGTCGCATGTTCCTAGCTGCGGGCCTGCCTTTCGTGGCCTTC
ATCGTAGGCGGTTCGTACATACTATCACAGTTTGTCTCAGGACAAGTAGA
CGTCAAAGACAGGCGGAGCAAGAGCATTCGCCAATTCAACTTGGAAGAGT
TTGTCTCAGGACAAGTAGACGTCAAAGACAGGCGGAGCAAGAGCATTCGC
CAATTCAACTTGGAAGAGGAACATCGGAAAACCATGCAAGAATTTCACGA
GGACTACGAAATCAAGAGGATACCGCGACCTGACGAGCAAAGGCCACCAG
AGGCGAACGTCTAGGAACATCGGAAAACCATGCAAGAATTTCACGAGGAC
TACGAAATCAAGAGGATACCGCGACCTGACGAGCAAAGGCCACCAGAGGC
GAACGTCTAG
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