mRNA_H-paniculata_contig18548.4572.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18548.4572.1
Unique NamemRNA_H-paniculata_contig18548.4572.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18548.4572.1 vs. uniprot
Match: D8LI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI79_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.250e-36
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 LQGNVEYGYGTKAERWEGTIPERHNSGQWGLPPGTKSVIDLARNPDDDSEVRLLYHKIVAPTKGVLGWAGGDSMAFDFVFTGAESMEASEVQALVKV 291
            L+  VE+GYGTKAERW GTI +  ++G  GLPPGT+S++DL RNPDD SEVRLLYH++VAPT GVLGWA GDS++FD VFT  + M A++V  LVKV
Sbjct:   88 LKEQVEFGYGTKAERWAGTIVDDEDTGYGGLPPGTESLVDLQRNPDDQSEVRLLYHRVVAPTNGVLGWASGDSLSFDLVFTNLDMMAANDVLDLVKV 184
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BLAST of mRNA_H-paniculata_contig18548.4572.1 vs. uniprot
Match: A0A6H5KJZ9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.650e-35
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 LQGNVEYGYGTKAERWEGTIPERHNSGQWGLPPGTKSVIDLARNPDDDSEVRLLYHKIVAPTKGVLGWAGGDSMAFDFVFTGAESMEASEVQALVKV 291
            L+  VE+GYG KAERW GTI +  ++G  GLPPGT+S++D  RNPD+ SEVRLLYH++VAPT GVLGWAGGDS++FD VFT  + M A++V  LVKV
Sbjct:  288 LKEQVEFGYGMKAERWAGTIVDDEDTGYGGLPPGTESLVDFQRNPDNQSEVRLLYHRVVAPTNGVLGWAGGDSLSFDLVFTNLDMMAANDVLDLVKV 384
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18548.4572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI79_ECTSI1.250e-3664.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJZ9_9PHAE8.650e-3562.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18548contigH-paniculata_contig18548:2395..4605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929434.791381-CDS-H-paniculata_contig18548:2394..25021622929434.791381-CDS-H-paniculata_contig18548:2394..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18548 2395..2502 +
1691480859.8690062-CDS-H-paniculata_contig18548:2394..25021691480859.8690062-CDS-H-paniculata_contig18548:2394..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18548 2395..2502 +
1622929434.811397-CDS-H-paniculata_contig18548:4422..46051622929434.811397-CDS-H-paniculata_contig18548:4422..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18548 4423..4605 +
1691480859.8770041-CDS-H-paniculata_contig18548:4422..46051691480859.8770041-CDS-H-paniculata_contig18548:4422..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18548 4423..4605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18548.4572.1prot_H-paniculata_contig18548.4572.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18548 2395..4605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18548.4572.1

>prot_H-paniculata_contig18548.4572.1 ID=prot_H-paniculata_contig18548.4572.1|Name=mRNA_H-paniculata_contig18548.4572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
LQGNVEYGYGTKAERWEGTIPERHNSGQWGLPPGTKSVIDLARNPDDDSE
VRLLYHKIVAPTKGVLGWAGGDSMAFDFVFTGAESMEASEVQALVKV
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mRNA from alignment at H-paniculata_contig18548:2395..4605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18548.4572.1 ID=mRNA_H-paniculata_contig18548.4572.1|Name=mRNA_H-paniculata_contig18548.4572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2211bp|location=Sequence derived from alignment at H-paniculata_contig18548:2395..4605+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGGGAAATGTGGAGTACGGGTACGGTACTAAGGCCGAGCGCTGGGA
AGGGACTATTCCGGAGAGGCACAACTCGGGTCAGTGGGGGCTTCCGCCTG
GAACGAAGGTGCGAAGGTTTGTATAAGTCATGCTCCAGTTATGGTGACGG
TTCTCATTCTTGTTCTTGTAGTGGTGAGCGTTTTTTTTTCATGTACTTAT
GTTTTTGCCCCGTTAGCGTTTTCCACACCTCGGGTGGAAGGTCTCGGTAA
CGGTATTTTGAAAATCATTCATTCGATACGGTAAAGTGATTTCCTGGGTA
TCGTGTCGGTAGACGGTATATCGGTATATCGGTAGCACGGTACAGTACGG
TAAGTAGGTTTCTCGGTATCTTGGCGATAGGCGGTATTCGTTTTTTTTCC
CCCTCACGGTACGGTACATTATATTGTTTTCTGGTAATTGGTATTTGGCA
CATTTTTGGGTCTCCACGTCTTTTGCCCGAGCGCAAGATACAAAAAAAAG
ATATAAAACCCACGCGCGTGTAGTAAACGGTATGTACGGGGGGTTTCACA
AGGAAACGACTCGTGTGTTCCGAGAGCCCTTTCCCATGACTCATGTATGA
TGATTCGTAATTTGAAGGGGAAATACCACAGGACACGATACAATTCTGGG
AGTTGACTGCAATCACCGCCTCGTCCGGCGTGAAGACAGGATGCATATCG
TATAATCGAAGGGAAGAAAATGATGAACAATGACAAAAAGACAAAAAAAA
TACAGTTGATAAACAGTAACTAACAAAACGTTGTACAGAGTGAGCTGCAT
TATAGTGGACAATACGCTGAATTATTTTTACGAGAAAAGCCGGTACTAGA
AAACTAGTTGACAGCATAGCAAATTTTACAGAAATTGGACGTCTCACCGA
CATCTCCGATCGATACAAATATATATATATATATATATATAAAGCAAAAA
AAAAAAAAAACTCGCATCCACAAAAACAATCAAAACTAAAAACCGGCAGG
ATAAATATCGAACAAATAAGTGCCTCACACTTAACGGAGCTCAGTTATTA
CTTACATTGTTATCACTAACTTTGACCTAACGCACTAAATTGCAATTGCA
AGTTCATATCCAGCTGCTTTTTTCTAGCACCGCGACAGCTTCCTTCGCGG
CCTTGACCGCCTTGGCTGCCCATGAATCGACAGCCTTGTCGTAGCTCTGA
ACCTCTGGGAGGTTTTAGTTCAGCTTTGAGGAAGATCATCTTCTCGACCT
TGGAGGGGAGCATCGTCTTGCGCAGGTTGCTGACCAACGGAGCGAGTCTC
AGAAGCAGATCCCCGTACACAGATTATCGAGGCGTAAGCTCCTGTAAGGG
TCGAAGACATTACCCCAAGTCTGCTGGCGAATATAGTCACTATGTACCCG
TGAGCGGTGCTAATTAGTCGAGATGGTGGAAAATCTTCTACACATATCCA
AGGACTAATTAGTCGCCTGGAAGGGCTAATTGAGACCCTCTTGGACCGTC
ATCGAGAACGACGCTCCCTGTCGCTGCGATCCTATTTATTTAATATACTT
TACGCTTTCAGATCGTGTGTGCATGCATGAATGTTGTACCTTGCAGCCGA
TCCCTTCTTCGGGTCCACACCTCTTTGGGGGTCGGGATCTAGGTGTGAAG
GGGTGTAGCATCGCCTAGTCAGTCATTTCGAACGACTAATTAATCGTTGT
ATGTATGAGATTTTCCGTGGGCATCGACTGTTTTTATCAGGGTGTTTCGT
TCCTGGGCGACCATGAGTGCACTTTTTTTGTGAATGTCTCATTTGCTAGG
GCACGTCCAAGTCTACCCACCTTGCACAAGCGAGTGATAAATTAGTGGTT
GTACTCCCCTGATAGGTACAGTAATTCAACGAGGCGTTGCCGTTTCAAGC
GTTGCTTCATGTCAGTTTGGGATATTGAAGGTCACCCCCTCCCCCGTCTG
CCCCCGGTCTCCTTCCTATGCCCCTCTGCCTCTTGTGTGGTCCTTTGTGT
ATTGGCCACATTACCCAACCAAACGTAGTCGGTGATAGACTTGGCCCGGA
ATCCCGACGATGATAGCGAGGTGCGGCTCTTGTACCACAAGATCGTGGCG
CCCACGAAGGGGGTGTTGGGCTGGGCGGGGGGCGACTCGATGGCGTTTGA
TTTCGTGTTCACGGGAGCGGAGAGCATGGAGGCCAGCGAAGTGCAGGCGC
TGGTGAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig18548:2395..4605+

>mRNA_H-paniculata_contig18548.4572.1 ID=mRNA_H-paniculata_contig18548.4572.1|Name=mRNA_H-paniculata_contig18548.4572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig18548:2395..4605+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGGGAAATGTGGAGTACGGGTACGGTACTAAGGCCGAGCGCTGGGA
AGGGACTATTCCGGAGAGGCACAACTCGGGTCAGTGGGGGCTTCCGCCTG
GAACGAAGCTGCAGGGAAATGTGGAGTACGGGTACGGTACTAAGGCCGAG
CGCTGGGAAGGGACTATTCCGGAGAGGCACAACTCGGGTCAGTGGGGGCT
TCCGCCTGGAACGAAGTCGGTGATAGACTTGGCCCGGAATCCCGACGATG
ATAGCGAGGTGCGGCTCTTGTACCACAAGATCGTGGCGCCCACGAAGGGG
GTGTTGGGCTGGGCGGGGGGCGACTCGATGGCGTTTGATTTCGTGTTCAC
GGGAGCGGAGAGCATGGAGGCCAGCGAAGTGCAGGCGCTGGTGAAGGTGT
CGGTGATAGACTTGGCCCGGAATCCCGACGATGATAGCGAGGTGCGGCTC
TTGTACCACAAGATCGTGGCGCCCACGAAGGGGGTGTTGGGCTGGGCGGG
GGGCGACTCGATGGCGTTTGATTTCGTGTTCACGGGAGCGGAGAGCATGG
AGGCCAGCGAAGTGCAGGCGCTGGTGAAGGTG
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