mRNA_H-paniculata_contig18471.4547.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18471.4547.1
Unique NamemRNA_H-paniculata_contig18471.4547.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18471.4547.1 vs. uniprot
Match: A0A6H5K9B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.550e-17
Identity = 70/162 (43.21%), Postives = 87/162 (53.70%), Query Frame = 1 
Query: 3022 ISRLFRPLLLTLLSAKLKIGGTVHVATDVEEYGEHVLSVMKVVQGYLTAKKL-----DVHVATAAAEVETEQTERPGSEQERGPTERSGPIARE----GLEA-PVQRIVVAEKGCVVAGKGAVALCWEGGEEVSRPDWRAFTKYEEKAKQAGRRVREFSYRL 3477
            + RL RPLLL LL++KL+ GGT+HVATDV+ Y +H + VM         K        +   TAAAE +TE        Q+ G   R   I  E    G+   P Q+      G        V+ CW GGE   RP WR FTKYEEKA++AGRRVR+FSYRL
Sbjct:  110 VLRLVRPLLLNLLASKLQPGGTLHVATDVDGYAKHTVRVMSTWTPEKRPKAARPTSSTMRSGTAAAE-DTEL-----GFQQLGGVHREEQIQGEEFADGMRGEPQQQQRAGSNGDSTRLVSEVSGCWVGGETAERPSWRPFTKYEEKAREAGRRVRDFSYRL 265
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BLAST of mRNA_H-paniculata_contig18471.4547.1 vs. uniprot
Match: D8LNW3_ECTSI (tRNA (Guanine-N(7)-)-methyltransferase trmB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.620e-16
Identity = 73/174 (41.95%), Postives = 93/174 (53.45%), Query Frame = 1 
Query: 3004 IFVPPPIS-------RLFRPLLLTLLSAKLKIGGTVHVATDVEEYGEHVLSVMKV---VQGYLTAKKLDVHV--ATAAAEVETEQTERPGS----EQERGPTERSGPIAREGLEAPVQRIVVAEKGCVVAGKGAVALCWEGGEEVSRPDWRAFTKYEEKAKQAGRRVREFSYRL 3477
            IF P P         RL RPLLL+LL++KL+ GGT+HVATDV+ Y EH + VM      +   TA+     +   TAAAE      ++ G     EQ +G  E    + R G   P Q+      G        V+ CW GGE   RP WR FTKYEEKA++AGR VR+F+YRL
Sbjct:  192 IFFPDPFPQDRDTERRLVRPLLLSLLASKLQPGGTLHVATDVDGYAEHTVRVMSTWTPEKRPNTARPSSSTMPSGTAAAEDTELGFQQLGGVRREEQRQG--EEIADVMRGG---PQQQQRAGSNGDSARLVSEVSACWVGGETAERPSWRPFTKYEEKAREAGRSVRDFAYRL 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18471.4547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9B8_9PHAE9.550e-1743.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNW3_ECTSI4.620e-1641.95tRNA (Guanine-N(7)-)-methyltransferase trmB n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18471contigH-paniculata_contig18471:62..3713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D8LNW3
KEGG koko:K03439
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGsCOG0220@1,KOG3115@2759
EC2.1.1.33
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size3652
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18471.4547.1prot_H-paniculata_contig18471.4547.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18471 3200..3550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.5762172-UTR-H-paniculata_contig18471:61..31991622929431.5762172-UTR-H-paniculata_contig18471:61..3199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18471 62..3199 +
1691480858.4864316-UTR-H-paniculata_contig18471:61..31991691480858.4864316-UTR-H-paniculata_contig18471:61..3199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18471 62..3199 +
1622929431.6676595-UTR-H-paniculata_contig18471:3550..37131622929431.6676595-UTR-H-paniculata_contig18471:3550..3713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18471 3551..3713 +
1691480858.5094347-UTR-H-paniculata_contig18471:3550..37131691480858.5094347-UTR-H-paniculata_contig18471:3550..3713Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18471 3551..3713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.6477008-CDS-H-paniculata_contig18471:3199..35501622929431.6477008-CDS-H-paniculata_contig18471:3199..3550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18471 3200..3550 +
1691480858.498768-CDS-H-paniculata_contig18471:3199..35501691480858.498768-CDS-H-paniculata_contig18471:3199..3550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18471 3200..3550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18471.4547.1

>prot_H-paniculata_contig18471.4547.1 ID=prot_H-paniculata_contig18471.4547.1|Name=mRNA_H-paniculata_contig18471.4547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MKVVQGYLTAKKLDVHVATAAAEVETEQTERPGSEQERGPTERSGPIARE
GLEAPVQRIVVAEKGCVVAGKGAVALCWEGGEEVSRPDWRAFTKYEEKAK
QAGRRVREFSYRLRRV*
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mRNA from alignment at H-paniculata_contig18471:62..3713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18471.4547.1 ID=mRNA_H-paniculata_contig18471.4547.1|Name=mRNA_H-paniculata_contig18471.4547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3652bp|location=Sequence derived from alignment at H-paniculata_contig18471:62..3713+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCACTAAAAGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAG
CTACCCTACCCGTTTGGGCGTAGGTCGGTATAGACATTGTTCTTCGTCAG
ACTTGCCACTTCCAGTGCCCCTTCGCCGGTAGGGTCATGGCGTCTCTAGA
GGTGCGCGGAACTTCGCCTTCTCCCCCGCCTAGCACCTTGAAATATTGGT
TGCTGCGTAGGCGTACTCCACGGCAGATTCCTCCTCCTGACTTCTCTGGG
TCGTCTGTCGGCTTTCTCGTCCTTCGCTTCGTCAGGTAGACTTGTTGTAC
GTGTCGGGGAAGCCTCTGATGAGCGGTATGTTTTGTTCCTCCTTTCATCC
GCTACTATCACATGTTGAACACTTTTACAAATAACAAACATCGGAAGATT
ATCGCGAATCTTTGGAAAATAAAGATTTTGCCTCCGGATCGGGAGGAATG
GTTCTGTTGACCCGTTTACCTACCAACGAAATTTATGCTCATTTATCCGC
ACCAACACACTTGACTAATATTATAGGCAGTTCTTCCAATGGATTCTTGA
GACGGTTTGACGAGTGCTAAGCATACAACGCACACCAGCCCCGTTTGGCG
GCACCTCAGATACAAACCTATCAGCTCATTTGGCTGCACGTCATACACAC
CGAACGGTCTCTTGGCTCCATGCCACTTGGTTGTGACCAAGCTGTAGACC
TCCACAGGCCGGAACTTGGCGATATCACAGGAGGACAGGCAGAAACAAGC
CATTGCGATATGACTACGAAATCCCCACCACAAGCTGCAATTAAATGCAG
GGCTCCTCAATGTGCTGTCCAACACAGCTGATTATACAGCGTCCCATGAT
GAATACTATTTGGCGGGTGACGGTTCCAATCCCACAACGGGCGGAGTATT
GCCGAGAGGGCGTGAATTATATTCCAGAACAATCCCATGGCTCGAACGAT
CGGACATGTAGCGGCTCTTATGCCGGGGATAGGACGCGGCTGGAGGGTGC
ACAGCGAAACGGCATCGCGACCCAATCGCCATTATGTGCATGAAGATGGG
GTATCCGCCGCGCTTGAAGCAATGCTCTGTATCAAGAGTATGGCTCCTCT
TCCTGACTGTCGTTTGCTTCTGAAACTGGTGATGAGTGCCAAAGGTTGTT
TGTTAGATACTGCAAACACATGTTCCATACGATTGCACTGCGCTGTGCGT
TAGGAGCAAGCTCGTGACTGAATTTGATACTGGTGTACGACAAAACGCAA
ATGCATCAAGTTCGTTCGGCTGGGTTGGCAGCCAACGATCCAATGACAAC
CTCTTCATTTACCCCTGCGACCCACAAGGAGGTCCATGAATAGACGAAAG
CTGTATGAATTTTTTTCCCATGCTACTCACTCCCCAGGAGACACGGCTGT
ACAGAACGTGTTGCGTCTCGAAGGGCATAACGCTAAGTCACTCCGCGCCG
GCGCTGACCAATGTCACTATACCAAACCGAGTAAACTACTCACAATGATG
GATGTTCAAAAAGACGACGGCAGTAGACTTTACCATGGTCTGTCGAAAAT
TATCCATGGTTGGGGGATGGGTTTTCGTCCTTGACAGTAGGTCAGACAAA
CGTCAGTAGAGTCTTTTCCTAAATGCAGGGACACGTACAGGGTTTCACTT
GGTTTTGAAATTGAATGCGCGTCTTGGGTGCAGTAGGCAGCTTTGCACCT
GCATACAGCGAATCGTTGCGAACATTGCAGCTTGATTTGAGTCTTGCCAA
TGTAGACTGCATGCTCTGCGCTCTGACAAAGCACTTCGGTAAAAGGCACC
CTCTGCTAACGCACAATACGGTCTACTAGTTCGGGTTCGGGTTGATTTGA
AATATGCATGAAGATCTGTACATCGGAAGAGGCGTTTGAGTAGTAATCTG
GCCTCTCGCACAAATCTTTAAGTTGATGGACTGATCGACGGTACAATAGT
CGAACGTAAAGATGACAATAGATACTCATCCCCAACGACGCGATGCCATC
GCTTGGCTTAGCGGCGGCACCTCATGCCGTAGTAAAATTTCCCGCGGTTC
AAGGGTGCATCTTCGCGACGGAAATGTTGACAGTCTGTCGGACCGAAGTC
CTCACGTTCGTGTATAAATTTTTCTTTTATCCAAATATGTGCAAGTTACC
GCGAGAGTATAGCTGACAGTACAACAGTACACGAGTTTACAACTTCAAAT
TCCTTTGGCTTTAGATGCTTTCTCGCTGGAAATCTCACCCGGCGTTCCTC
GTTGTGCTTGTTTTCGCATAATGATTGTGAAAAAGCGCATGCATAAACAC
AGATCACAAGATATACATACCCTGTGAGCAACTTTTTTCTCACATCACAT
CTCAGACTTGTGGCAGTGAAGCACATTGAACAGCCCAGTGGGTCCTGAGC
CCTCTGGGCAGCTGTCGATGCTTCTTTACTTGGCTGTGTGTGCAGAATGG
TTGAGGGAAAACGCACAGGCCCAAAGAAACTCCCTGATTTTGTGCCATGG
AGGAAGAATATGCCTCCGAAACGCAACACATGTACGTAAATAAGACCTAA
GAAAGATTTTGGTCAAATCTTGCCGTTTTTCTCTACTTAAAAAAGTGTCT
CTTGAAATGTAGAACACATAAGCTCACATGTCGTATAATAAATATCTGAA
ACGATCATTTCGGCTTTTCCTGTCGAATCGGGTTGGATTTTAATTTGTAA
TTTACCCCACAGCCCAAAATGCTACTTGTCATCGTCCTATCCTACGTAAC
ATAGGGGATCCGAACAAACACTCGCCCTTTTGAAGTAAGTTTGTTGAATG
TATAACGTTAACAAGAGTACAACGAAGTAATTTTACGAGGTTCAGTGTAC
TAGGTTAACCGACCGACCCCCCCCCCCCGATTCGTTTGAACTTGAAAACG
AAATTGAGCCTACACATATCCCAATACTGAGAGGTTCGGGGGATCTTTCT
GTTGTCTCCAAAAAACAAAGCGAATTCGCCATGACACCATCCCTCTCTTC
TCCATCTTTGTACCTCCCCCCATAAGCCGTCTCTTTAGGCCGCTGTTGCT
GACCCTGCTCTCCGCCAAACTCAAGATCGGGGGCACTGTTCACGTGGCTA
CCGATGTGGAGGAGTATGGGGAGCACGTGTTGAGCGTGATGAAGGTGGTT
CAAGGATATCTCACCGCGAAGAAGCTGGATGTGCATGTGGCCACTGCCGC
CGCGGAAGTCGAAACGGAACAAACGGAACGACCAGGAAGTGAACAAGAAC
GCGGACCAACGGAGAGAAGCGGACCAATAGCACGAGAAGGGCTGGAGGCA
CCGGTACAAAGAATAGTTGTAGCAGAGAAGGGCTGCGTAGTCGCAGGGAA
AGGTGCTGTGGCATTGTGCTGGGAAGGGGGAGAGGAGGTGAGCCGGCCGG
ACTGGCGAGCTTTCACCAAATACGAGGAGAAGGCAAAACAAGCGGGGCGT
CGCGTTCGGGAGTTCTCGTACAGATTACGACGGGTATAGCTCTGTGTTTG
TAGAACAAATAGGTACCTTAGTATATAGCCGGTAACACCAACCGCCGATA
TATCGACACCCCAAAAAATGTTATCGTATCAGACGATCGATGTATCGGTC
GACATCGGTACTGATACACAACGGTCAACATCACCTCATATGTGCTCACC
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig18471:62..3713+

>mRNA_H-paniculata_contig18471.4547.1 ID=mRNA_H-paniculata_contig18471.4547.1|Name=mRNA_H-paniculata_contig18471.4547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig18471:62..3713+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTGGTTCAAGGATATCTCACCGCGAAGAAGCTGGATGTGCATGT
GGCCACTGCCGCCGCGGAAGTCGAAACGGAACAAACGGAACGACCAGGAA
GTGAACAAGAACGCGGACCAACGGAGAGAAGCGGACCAATAGCACGAGAA
GGGCTGGAGGCACCGGTACAAAGAATAGTTGTAGCAGAGAAGGGCTGCGT
AGTCGCAGGGAAAGGTGCTGTGGCATTGTGCTGGGAAGGGGGAGAGGAGG
TGAGCCGGCCGGACTGGCGAGCTTTCACCAAATACGAGGAGAAGGCAAAA
CAAGCGGGGCGTCGCGTTCGGGAGTTCTCGTACAGATTACGACGGGTATA
GATGAAGGTGGTTCAAGGATATCTCACCGCGAAGAAGCTGGATGTGCATG
TGGCCACTGCCGCCGCGGAAGTCGAAACGGAACAAACGGAACGACCAGGA
AGTGAACAAGAACGCGGACCAACGGAGAGAAGCGGACCAATAGCACGAGA
AGGGCTGGAGGCACCGGTACAAAGAATAGTTGTAGCAGAGAAGGGCTGCG
TAGTCGCAGGGAAAGGTGCTGTGGCATTGTGCTGGGAAGGGGGAGAGGAG
GTGAGCCGGCCGGACTGGCGAGCTTTCACCAAATACGAGGAGAAGGCAAA
ACAAGCGGGGCGTCGCGTTCGGGAGTTCTCGTACAGATTACGACGGGTAT
AG
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