mRNA_H-paniculata_contig1845.4539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1845.4539.1
Unique NamemRNA_H-paniculata_contig1845.4539.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1845.4539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1845contigH-paniculata_contig1845:947..2327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size219
Cds size114
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1845.4539.1prot_H-paniculata_contig1845.4539.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1845 1051..2327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.7770529-UTR-H-paniculata_contig1845:946..10501622929429.7770529-UTR-H-paniculata_contig1845:946..1050Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1845 947..1050 +
1691480857.7255661-UTR-H-paniculata_contig1845:946..10501691480857.7255661-UTR-H-paniculata_contig1845:946..1050Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1845 947..1050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.7910216-CDS-H-paniculata_contig1845:1050..11121622929429.7910216-CDS-H-paniculata_contig1845:1050..1112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1845 1051..1112 +
1691480857.7359414-CDS-H-paniculata_contig1845:1050..11121691480857.7359414-CDS-H-paniculata_contig1845:1050..1112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1845 1051..1112 +
1622929429.8057914-CDS-H-paniculata_contig1845:2275..23271622929429.8057914-CDS-H-paniculata_contig1845:2275..2327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1845 2276..2327 +
1691480857.7489858-CDS-H-paniculata_contig1845:2275..23271691480857.7489858-CDS-H-paniculata_contig1845:2275..2327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1845 2276..2327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1845.4539.1

>prot_H-paniculata_contig1845.4539.1 ID=prot_H-paniculata_contig1845.4539.1|Name=mRNA_H-paniculata_contig1845.4539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MYYSRPRWCFQRGPVTSPEVRWEVDGLVVGYGLSVQTL
back to top

mRNA from alignment at H-paniculata_contig1845:947..2327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1845.4539.1 ID=mRNA_H-paniculata_contig1845.4539.1|Name=mRNA_H-paniculata_contig1845.4539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1381bp|location=Sequence derived from alignment at H-paniculata_contig1845:947..2327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGGCCTGCCGACCTGTTTCTTTTTGATGATTATTGTTCTGCAGTCG
AAGCGCCATTGCATATTGGCTTGAAACGCAATACAATCTTCAAGGAATGT
GGGGATGTATTACTCCCGCCCCCGGTGGTGCTTCCAGCGGGGACCTGTCA
CCAGCCCGGAAGTGAGGTACGAAGTGGGGGGTATGAGCGTGGCTCTGCCA
TGTTACTTACCAGGCGACGCTGGCAGAGCTGCAGCGAGCGGCGAAATCAG
CCACTAGAGTGACTGGAGTTGACTCCTGGGGATGTCTAGTATGACATGAT
GTGGAGCATGAAATCTCATAATCCTGTGTCTCTACATGGAGAAGGGGTAT
ATATTTGAGGGGGGAGGTGCCGATTTGGGACGGACCTTCGATGACATCAT
ATACGTGTACTGCAGATGTATACCACGGAATGAACAACTTCGTGGGACAT
GACACGGGATAACGCACTACGAAATGGATAAGACCTGGATAGGACCGAGG
GACTTGTATGCCCATCGTCTGTTTGATGTAGCCGCAATGCTATGTGCATA
TGATGTGGAGGTAGTACGTACGACTGACAGACAGCAGGACAGTAGTTGAT
GTACTTTCCAGCATATGTCTGTCCGGTGATAATACTGCGGTAACGGGGAT
ATCAGAAGAGATGGAGAGGTTGACAGGTAGCAGGATACCCCTAGTTCCTG
AGCGAGCATTTGCTTATTCGCCATGGTGTTCCGTGTATGAATGAAGATTC
CCACAGATAAAGCAGCGGCCACACAGGCAGCCTTGAACACTGGTGTCATT
TGGAAGATGACTCGGAAGTAGACAACATCAGTGAACGATTCCGTGGTAAT
TGGTGATTCGGCATTGGGCTTTCCTAAAACGTTATTCTTCCTGCCCAGTC
GTTTTCCACTTTTTCTCCGTGTTCAAAGGTTGAATCCATGTTCGCCTTCA
CCCCTATGGCACCTTGCTGCGTACAATCCCTGAACCAACCCTGCTTGAAA
GAAGAGCCAGCTCCCTCCTTTCTATTTGTGACAAGCGCACACATGATTAC
GGTGATGGAGTTCTACTGACAGTACAGATGCTCCTGTAATAATGACAGAA
ACATACAGGAGTGACAGTAGCTGGCAAGGTTTTGCATTCCAGGACTGACA
ACAGTGTATGATATAAATGCGAAGCACGAAGCACGAACTATCATTGCGTA
TTCTCGGATGACACGCCGCACGCTTTTTTTTCTCTCTTTTTTGGTCTTTG
GTCATTGATGGATGGCTCTGTGTTTCTCATGCGCCTTCGGCGGACACGCT
GTTTTGGACGCTGCGCTGGCCGGGGACAGATGGGAGGTTGATGGTCTCGT
TGTCGGCTATGGTCTTTCTGTGCAGACCTTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1845:947..2327+

>mRNA_H-paniculata_contig1845.4539.1 ID=mRNA_H-paniculata_contig1845.4539.1|Name=mRNA_H-paniculata_contig1845.4539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig1845:947..2327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATTACTCCCGCCCCCGGTGGTGCTTCCAGCGGGGACCTGTCACCAG
CCCGGAAGTGAGATGTATTACTCCCGCCCCCGGTGGTGCTTCCAGCGGGG
ACCTGTCACCAGCCCGGAAGTGAGATGGGAGGTTGATGGTCTCGTTGTCG
GCTATGGTCTTTCTGTGCAGACCTTAATGGGAGGTTGATGGTCTCGTTGT
CGGCTATGGTCTTTCTGTGCAGACCTTA
back to top