mRNA_H-paniculata_contig1843.4529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1843.4529.1
Unique NamemRNA_H-paniculata_contig1843.4529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1843.4529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1843contigH-paniculata_contig1843:3893..4420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size199
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.0858438-CDS-H-paniculata_contig1843:3892..40051622929429.0858438-CDS-H-paniculata_contig1843:3892..4005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 3893..4005 +
1691480857.4526439-CDS-H-paniculata_contig1843:3892..40051691480857.4526439-CDS-H-paniculata_contig1843:3892..4005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 3893..4005 +
1622929429.1055086-CDS-H-paniculata_contig1843:4334..44191622929429.1055086-CDS-H-paniculata_contig1843:4334..4419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 4335..4419 +
1691480857.4636493-CDS-H-paniculata_contig1843:4334..44191691480857.4636493-CDS-H-paniculata_contig1843:4334..4419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 4335..4419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1843.4529.1prot_H-paniculata_contig1843.4529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1843 3893..4419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1843.4529.1

>prot_H-paniculata_contig1843.4529.1 ID=prot_H-paniculata_contig1843.4529.1|Name=mRNA_H-paniculata_contig1843.4529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
RLDIISPKTIGAEDRTMATRVRERMREMSREAADFENSDSEGNGSDASSS
EKEDETDILAQQARER
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mRNA from alignment at H-paniculata_contig1843:3893..4420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1843.4529.1 ID=mRNA_H-paniculata_contig1843.4529.1|Name=mRNA_H-paniculata_contig1843.4529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig1843:3893..4420+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTGGACATCATTTCGCCAAAAACAATCGGTGCCGAAGATAGGACAAT
GGCCACGCGCGTTCGCGAACGCATGCGGGAGATGTCACGAGAGGCGGCTG
ACTTCGAAAACAGGTATCACACCAAGCACAGAACCAACGCTCGACGTTTA
GTTCATGTAGTTTGAGTGTAGGAAATCATGTAACACGTCAAAAGATCTAA
CGAGCAAGCACACCGAGAGTTCTTTCAGCCGGAACCTTGGTAAATATGCT
GCAGTAAATCTTAGGTGAAGAGTTGTGAGGAAAGCTATTTCCGTATGCTA
AACAAGGCGTTGACAGTACTTGCAGGGTAAATTGTATTTATGGTATGTTT
TATCAAAATTAATTGAACTATGCTGCTGTTATTTTAAACATACTTCGAAG
TATTGCGCCGTTGTCGCCAACAATCCCGCTGTTATTGTCCAGCGATAGCG
AAGGAAATGGGTCCGACGCCAGTAGCTCAGAGAAGGAGGACGAAACTGAT
ATCTTGGCACAGCAGGCAAGAGAGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1843:3893..4420+

>mRNA_H-paniculata_contig1843.4529.1 ID=mRNA_H-paniculata_contig1843.4529.1|Name=mRNA_H-paniculata_contig1843.4529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1843:3893..4420+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTGGACATCATTTCGCCAAAAACAATCGGTGCCGAAGATAGGACAAT
GGCCACGCGCGTTCGCGAACGCATGCGGGAGATGTCACGAGAGGCGGCTG
ACTTCGAAAACAGAGATTGGACATCATTTCGCCAAAAACAATCGGTGCCG
AAGATAGGACAATGGCCACGCGCGTTCGCGAACGCATGCGGGAGATGTCA
CGAGAGGCGGCTGACTTCGAAAACAGCGATAGCGAAGGAAATGGGTCCGA
CGCCAGTAGCTCAGAGAAGGAGGACGAAACTGATATCTTGGCACAGCAGG
CAAGAGAGCGACGATAGCGAAGGAAATGGGTCCGACGCCAGTAGCTCAGA
GAAGGAGGACGAAACTGATATCTTGGCACAGCAGGCAAGAGAGCGA
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