mRNA_H-paniculata_contig1842.4524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1842.4524.1
Unique NamemRNA_H-paniculata_contig1842.4524.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1842.4524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1842contigH-paniculata_contig1842:2328..8722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size213
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1842.4524.1prot_H-paniculata_contig1842.4524.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1842 2382..8704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.4774776-UTR-H-paniculata_contig1842:2327..23811622929428.4774776-UTR-H-paniculata_contig1842:2327..2381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1842 2328..2381 -
1691480857.198235-UTR-H-paniculata_contig1842:2327..23811691480857.198235-UTR-H-paniculata_contig1842:2327..2381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1842 2328..2381 -
1622929428.5200481-UTR-H-paniculata_contig1842:8704..87221622929428.5200481-UTR-H-paniculata_contig1842:8704..8722Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1842 8705..8722 -
1691480857.2258987-UTR-H-paniculata_contig1842:8704..87221691480857.2258987-UTR-H-paniculata_contig1842:8704..8722Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1842 8705..8722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.492974-CDS-H-paniculata_contig1842:2381..24821622929428.492974-CDS-H-paniculata_contig1842:2381..2482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1842 2382..2482 -
1691480857.2064667-CDS-H-paniculata_contig1842:2381..24821691480857.2064667-CDS-H-paniculata_contig1842:2381..2482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1842 2382..2482 -
1622929428.5059907-CDS-H-paniculata_contig1842:8664..87041622929428.5059907-CDS-H-paniculata_contig1842:8664..8704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1842 8665..8704 -
1691480857.216865-CDS-H-paniculata_contig1842:8664..87041691480857.216865-CDS-H-paniculata_contig1842:8664..8704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1842 8665..8704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1842.4524.1

>prot_H-paniculata_contig1842.4524.1 ID=prot_H-paniculata_contig1842.4524.1|Name=mRNA_H-paniculata_contig1842.4524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MDATVCVKLSAPRGGNQLRDTRCVHICPRVMRTSRIICRWSPTTDT*
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mRNA from alignment at H-paniculata_contig1842:2328..8722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1842.4524.1 ID=mRNA_H-paniculata_contig1842.4524.1|Name=mRNA_H-paniculata_contig1842.4524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6395bp|location=Sequence derived from alignment at H-paniculata_contig1842:2328..8722- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTACATTTCTTACTTTATGGACGCGACAGTGTGCGTTAAGCTCTCAGC
TCCCCGAGGTATGTACTATATATGAAAAGTATGTTGCCGTTCTATCTTGG
TGCAAAAAGTATAAACATTCCCAGGGCGGGGTAATTTCAAGGTGATGGCA
AGACGTAATCGACAAAAGTCCACAGGCTCGTCTGTTCTGTTGATTTGTTT
CACCAGATCCTGCGCAGGGCAAAGCTGCCTGTCCGCAAAGGTATGCCTCA
CTTCTGCTGACTTACTGCCGGGCTTTAATATCTGTGAATCTCTGTTGTTG
TGCGATGAATATGGTACTGCAACTTGGTAGAAGTAATTGTAGTACAATTA
TACATAATCCTATCTACAGACAGTAGACGTGGTGACAATAGGATAAACCG
ACATCAATCTTGACTGTTGACTCCAATGGTACAGTTCGCTATTCGTCCGA
TGCGCACCATCGGACGGAGCGATTCCTTCAGTAATGCACTGTACGTGTTT
TAGGATGCGTACATGGTCGCACGCTGCTCAGCCGTACCCTACGCATTATC
AACACACGTGTTTCCCTCCACTGATCAGCACACGCTGTACGATGCGCTGT
ATGCTTCTCTACCGTTGATGCTTATACTACGTAAATGTTGTTCTGTATAA
AGAGGTGAAAGCAACTTCTGTGAAAAATATGGATGATCATAACTTCTGAC
GACATAAAAATAGTCGAAAAGGATTTTCGAGAAAAGCTCTGCACTCTGAA
TTTCATCGAAGTATTCGGATATTTTTTTTTCAAGAGAGGCAGTTTCTCTT
TTGTTTTTCTTGTTTTTGGATGAAATAAAGTACCACAATAGGTTATGATG
CCAGGGTCATGTATTTGTTCATTTTTTGAAAGCGAGGGCGCCGGTACATC
CATTTTGTATATAATTACGATGGGAATAGATGAACTACAATTACCGTCAT
GTAAAGTCATTAGAGCTCTAGAGCTATCAATATTTTGCTCGTCTCGTGAA
TCTGGAGTTTATTTTTACTAACACCCGGAATGCATGCAACCCGAAAAATG
CGCAAGGTGAAATGTCGTGGCAACCGGTATCCTTTTCCACCGTTCGCGTT
GCCTGTCTCCCCCAAGGAGACATCACTTCTCAATGGCATCCTATGCTATG
TCCAATTGCCTCTGATTCCCGTCCCGACCTCGGCTCGGCTACAGTGCTAT
ACAAACCCAAATGCCCACGCTTCCAGTGTTAAGCTAAAACAAGAACAATA
TACGTATATTCCCACCGTAATAAGTCCTCCCTCATATCGCGTGTCTTAAT
ATTGATTCGGCGGCGTTCTCTGCTCCCCCCGTTACAACGGTAAACGGTTT
ATATCACCCCACACTCGGAGCCGATCGCTGCCGTCTTCCCATTGGGTCCC
TCGTTCCGATTGTATGCCCCCGGCTACGGCATCTGTTGCCAACGCCCGAT
ATACCGCCCCTGAATCTCCAAATTAACCATGACGTGGGCAATGAAAGTAC
CCCTACTCCAACACCCCTCCCGTTTGATGACTGCGGGTTGCAGCCAGGAC
CACTCGTGTTGCACTACCGATACGCCCGGAATGGACCACGTATTCGGATA
GGTGTAAATCTGCTGCAGTACCATGGGACGTAGTGTGACAGTTGCTTGAC
CGTGCATCCATGCTTTCCTCGTCGCGCCGTACGTGGCTAACGGCGCTGCG
ATATCCTAGTCGGTACGTGTCGACATCAAAGCTACCATGATTCTTGCCCA
CTTCACCGTACTCCTGCAAATGACCCGCGTCTGCCGATGTGTCACTCGTA
CTCATAGACAAATGCTCCCTGGACAGAACGCCCACCGCTTTTGATCCTCC
TTATGGGCCCTCAATCGCATTTCTACTCGGTCGGCGCTGCCCCATTCGGT
GGGGAAAGACAATTGCACATCGTCTCTCTTCAAAGTGATGTCACCCCGCA
TCAGACCGAAATCCTTGTGGATTCAACCGTTGCTGTAAGCGCAAAGTTCC
GAGGCGTGGTATTGGAAAAAAATGTGATGAACATAGACACAGCCACAACA
TGTCAACTCCCACGCCCCACGAATCAGCCAAATTACGTCCCTGCCGCAGT
ATGACCCAGGTTAACGGCCTCTTAACACGAGCCCCCTCTCCTGAAATAAT
ACGAATCCTCGTCATGGTTGGGCGGATTGCAAATCATGACTACCATTACC
CATGCTGTCATGACCATCCCAAGCAGTTCTAACAAGTTAATAATGATCGC
GTTTTTGGCTGTCAGCCGGTAGGAGAATGTGACCAAATATTGGGGGTAAA
GGGACATAATAGGTTGTGGTTGATGGCTCTCTTCCACCAGTCCAAATCAT
CGTAGAACTCGTCAGGTAACGATACGCGCTGCCCTCCGTTCCGTATTGGA
ACGCGGATGGTCCTCATAATATCGCTTTCTGTCCTGCAATTTTTGACATT
CGACATGCGAAATATCTCCCCACTCTTGCTACTGTCGATAGATGTCATAA
TTTACCCCTTTTATATACTTTATACGTCTCGTGGTGTTGCGAATTCGAGT
TTCATCGCCAGTCCCACAATTTGTTGATGCAGTTCCGCCCCTGGCTGCCT
CTTTTCTGTTTGATGAGATGTGGTGCGTATACCGTTCCAATTTATACTCC
GGCTGTTCGTCGTAATCCGGCTTTGGATCCGATATGTTCCTGTCATGCAT
GCAACTTATGGTCTAAATGAACCAGTCTCTATCCGCAAACCCCAGATCTC
GCTTCGCTTCGTTATCACATTTACCTTTACACTAATGCAATAGCCTCTAT
TTACATAGCGTAATATTGGGCCATCTTTATCCTAAATTCATGTGTGCAGA
CTGCAATACGGAGAGATCATTGGATGCTGACAGCTGGAATATTGGATAAT
GACAATTATATGCGTCGTAGGGAAAAACGTGCCAAACCGACACTACATAT
ATATATAGATGTATTGATCCCGTTGGGCAGGGAGTTATAGCCCGTGTCAA
GTATCTATCAAAAGCTGACATTACAGGCTTTCCAAATTTGCCTCTAGATT
TTGTCACAGTCTTGGTGATAAAAAACGAGCGAAGAAACTCATTATTTATT
GTTCCGAAATATGTAATTGGCGTTTGGGGTACAATGAGTCAAATTGTGAC
CTTATCTGAGGGGTGCATTAGAAAGCTGGTAACGAGAGCTTTCATCCAGT
AACAGGTTTTCCTCGCAGAGGCGCCGCCCTATGAGAGATAGAAACCAAAA
CATCCCTCGGCATAGAAATTACTTCCACGACTTTATGCATGATCACGGCA
CACCTGTGTTGCATTCCAGTGGATAATGTCGATGCAAACAAAATTTTAGG
TGAAGAAATCAAGCGTGGCACCACAACGCCCGCCGGCTTTTGCCAAGGAT
ATCTCAATGATCCAGTTTTAGCAACTCTTCAAACCTCTGAAAGTTTAAAG
GCACTATGACTAACGCGTTCCTCAAACGACGGGGTATGAGCCTATTTGAT
GGTGGTCTGTTGTGCGCGGCGTTTTTTTACGTTCGTGGTTCGTTCCATGA
TGTTGAAATTGGACTGAGTTATTTATGTATGGGTGGATTTTTGGATATTG
GGAATCTGTTGATTGAACAATGTCATGTATCATCACAAGTGTAAGTGTAT
TATCGACACGCAGAACTCGGCCTCGTGGGTACTGAAGAGCACGAGACCAC
CTCGCGAGAGCACTGTGGGGCAGGGATGATATCCCCATCAACTCCTGCCG
TAAACGCTTGGCACAGCTTTCGAACCTCGCGCAGCAGCGTGCGAACAGAG
CACATGCCTGATGCCCACTTATTTTTCAGTTTTGCGTAAACAAAAGGTGG
GTTGTACTCAAATCCCCGCATGAACTAAACTGACTGCAGGTCATTACCAT
TATGGTCGCCCAAAGGAACATATTGCTAACCCTCGCCAGTGTCTGTGTTT
GATGGACTCGTCACTGACTGCCGGCTGCCAGCGAGTCGTTTACAAACTCA
CAGCGTCAATGGGTGCACGACGCGACAACCTTCTGCTGTAGCACGCGTTT
TGGTGGGGTGCTGTCGGCTTGGCCTCTAAACTAAATGCCTCATGTTGGCA
TGTGTTGGTGTGTGGTGCTTCAGGTAAAAACCTTTCTTGATCCGACAAAA
GAGATGATGATCGAGTCTGCAAAAAAGGATGTCTATCTTGTTTTGTGTTA
TATTTTCTTAACTTTTTTTCCACGTCACGTTCAGTCCCATCTTGACTGAC
TGCCTAAAGCCACTGCACCACACCCCTGTGATGTGTCCCAACCATGGCAT
GTGCAAAGGCTCGACAGGAAATATCACGCTCACGGCCGGTGAGGTGTGTG
ACCAGATGGGTAAATCCTATGCGAAAAATGCATTTGCTGGTCCCTGCCAG
CCAGATACACTTCTTTTCGTTGAACTCTTGTTTTTTCGTTTCACATGAGT
TGCAACACAGGTGCGCATACATCGTGATCGTACAAGCTGTACGATTCATA
CGTCTGTTCCATGGGTGAGCATGCCCGACGGATGGTTAGCGTGAATGTGT
GAAGAGCATGAGCCATTCGCCATGCTATCCTGTATATGTGGAGAGAGCCT
ACCAGATTTCCAAAAGGAAAGTCACTATTCCTACGCTAAACACTCGAAAG
TAACTTGTCCAAAAGTAGGCAGGCGCTTTTCACGTATAATACTCTCACAG
CGACCTATCTGACCACTGACCGGCTGAGTTGGCGTACTGTTCGGCGATCG
CTTCAGAATCAAAGTATCTGGAGTATGACAACAGTGCTGATGTACAGGCG
AAATAGAACCGGGATTGGAGAGCACCTGTGTTCTGTCAAAACTGCACGTT
GGTACAGACAGCAATTCACAGTCAATGGTGTACAGACAGTTTGTGAGTTT
ATACATGTTTCTAGTCATTTTCCAGGACTCAGATAATCTGTGCAGCTGAC
TTCCGCATGACGAAGTATTTCACCCTCCGGACAAAAACGAATACTTGCAA
ATGGTTTTCACCAAAAACTTGAAGTATTCGCCTGAGTTTGAGAATGAGCT
CGTGTGTTCTATGTGCCCCGGACCATCCCGAAAATGAGCGTATACATACA
ATAAAGTAATCACCCCTGCTCTCACACTTGCTGGTTTTGGCTGCTCGCTA
CCTGGGTCATCGAGTTTTTGGGGGGGAGGGAAACTTGTAACCATCATTAA
ATATTTAGGCACAGGAGTATATTTCGCAACGAAGTCTGAGTTTGCCAACA
AACGAGGAAATGTAGAGTTTTGCAATCGTTGTGCGCAGGTCATGAGCTAT
GCCAACTCCCTGTTCGTGTCGCATGTATTGTGTATACCGGGCTGGCTCTC
TGGATGGTGGTGGCTCCCTATCCCCGAAATCATGCCTCACGCTTTGTTTC
CCCGTTTCTTTTTTTTCAGGGGTGTTCTCGGTAACATTACCACGGTAAAC
ATATCGCCGTGAAATTTCCATCTCACGTTTACCGTTACTGTGCACGGTGC
AGCCAAACGTGATTACTGTGGGACCAAAGCCGTTTCCCCTTACCGTTACC
GCTAGTCCCAGATACCGTACGATGAGACCCCGTTATCGTGCCGTGAGCGT
ACCTTAAGGAAGAAATCGCCATGACCGTGGGTCTGATACGACCGGATTCG
CAAGCTCCGTTACGTGTGATGCGCTCATCTGCTGGATATGTTCCCTCTGA
GGTTTTGTGGATGAAAGGTTATTTTTTCATGCTATGCCTTCCTTTATTTT
GTACCGGGTTTTCTCGCGACAGTAGTTCAGCCTGTTTTTGACTGTATTGC
AGTTTGCTTTGGGTGGTTTTTTTCGGTTGTATTTAAAAATATTTGCTTTC
AGTTATTTGATCTGCCTTTTCTTTTCTTGCGACGATCATGCGTCATGAGT
CACAGACATACTTCACATACTGACCACGCCGGCAAATGGGAGTTTTGTAT
TATACTCTGGAGTTCTTAGTGTGTGGTGTGGTATTTTGCCTTCAAACTAT
AAACTTGTTACTCGATAGGAAGGAGCCTCGGTGCCTGGTGCGTCGTTTCC
TTGTGGGACTCCCCGTATCACATCGTTACTACGTCTTACATGGGCTTTAT
CGCTGCATCGTGCGCTTGGGCACTGACATACCAAAAACTCTCGCACGATA
CCCAGAAGACAATGCTGTACCATGTCATCGATACTTCGAGTACGTTTTAT
CGGCACGATGCTGACGAAATATTGTTTATTCCTTGTTCAGGTGGGAATCA
GCTGAGAGACACACGATGCGTACATATCTGTCCACGGGTGATGCGTACGT
CACGCATCATTTGTAGATGGTCGCCTACCACCGATACGTAGGGTACGGCT
TGTATAGGGCACGGTTCGTCCTACGTTTGAACCCTTTGACTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1842:2328..8722-

>mRNA_H-paniculata_contig1842.4524.1 ID=mRNA_H-paniculata_contig1842.4524.1|Name=mRNA_H-paniculata_contig1842.4524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig1842:2328..8722- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCGACAGTGTGCGTTAAGCTCTCAGCTCCCCGAGATGGACGCGA
CAGTGTGCGTTAAGCTCTCAGCTCCCCGAGGTGGGAATCAGCTGAGAGAC
ACACGATGCGTACATATCTGTCCACGGGTGATGCGTACGTCACGCATCAT
TTGTAGATGGTCGCCTACCACCGATACGTAGGTGGGAATCAGCTGAGAGA
CACACGATGCGTACATATCTGTCCACGGGTGATGCGTACGTCACGCATCA
TTTGTAGATGGTCGCCTACCACCGATACGTAG
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