mRNA_H-paniculata_contig1827.4460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1827.4460.1
Unique NamemRNA_H-paniculata_contig1827.4460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1827.4460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1827contigH-paniculata_contig1827:12090..16013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size681
Cds size681
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1827.4460.1prot_H-paniculata_contig1827.4460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1827 12090..16013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.2118554-CDS-H-paniculata_contig1827:12089..121401622929419.2118554-CDS-H-paniculata_contig1827:12089..12140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 12090..12140 -
1691480853.3411102-CDS-H-paniculata_contig1827:12089..121401691480853.3411102-CDS-H-paniculata_contig1827:12089..12140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 12090..12140 -
1622929419.226129-CDS-H-paniculata_contig1827:13058..132751622929419.226129-CDS-H-paniculata_contig1827:13058..13275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 13059..13275 -
1691480853.3522286-CDS-H-paniculata_contig1827:13058..132751691480853.3522286-CDS-H-paniculata_contig1827:13058..13275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 13059..13275 -
1622929419.24214-CDS-H-paniculata_contig1827:13793..140201622929419.24214-CDS-H-paniculata_contig1827:13793..14020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 13794..14020 -
1691480853.3609197-CDS-H-paniculata_contig1827:13793..140201691480853.3609197-CDS-H-paniculata_contig1827:13793..14020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 13794..14020 -
1622929419.2596514-CDS-H-paniculata_contig1827:15827..160131622929419.2596514-CDS-H-paniculata_contig1827:15827..16013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 15828..16013 -
1691480853.3692741-CDS-H-paniculata_contig1827:15827..160131691480853.3692741-CDS-H-paniculata_contig1827:15827..16013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 15828..16013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1827.4460.1

>prot_H-paniculata_contig1827.4460.1 ID=prot_H-paniculata_contig1827.4460.1|Name=mRNA_H-paniculata_contig1827.4460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
RGSGGEAAEETREKGEGEREVAQQRSSFDGSRDSSVVRGVRFMEFSELRT
ACLLSPSSTSLEVCVRLGSVKYGEEQRNPVGERQQQSRWQRGNNRLWGGR
KSGQGLDSVPTISHRACVEFIDVELSLVVGICRTERSRGWRIAEITSLDA
RALRFDLGVNLSRVEEFREALESAKDATFAKRIPKKPISYAGDTSHAPGG
EGTRSTPMLRSSLPFPAGSISPSIEPR
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mRNA from alignment at H-paniculata_contig1827:12090..16013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1827.4460.1 ID=mRNA_H-paniculata_contig1827.4460.1|Name=mRNA_H-paniculata_contig1827.4460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3924bp|location=Sequence derived from alignment at H-paniculata_contig1827:12090..16013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGGTAGTGGTGGCGAGGCAGCGGAAGAGACCCGCGAAAAGGGAGAGGG
AGAAAGAGAGGTAGCTCAGCAGAGGTCTTCTTTCGATGGTAGCAGAGATT
CTAGTGTTGTTCGTGGAGTTCGGTTCATGGAGTTTTCGGAGCTTCGAACA
GCGTGCTTGCTCTCACCATCCTCTACTAGCTTGGAGGTAAGACCTAGCTA
CGTGGGCATCAGGAACTGAATATAAAGTCCCCTTTTAGTATCAGGTGCGC
AGTCTTTGTAAAGAAGGGTCGAGTGTTAAACCTATACACGTACTATCTGC
CTGATGACAACATGGCGTTGATTTCTATAGATATATCAATGGGATGGCAA
ATACATAGTCGCCGTTCTTTGGTCTATTTCCGCCGATGTTCAGAGTAAAA
ATATCAAGCTACACCGTTTAGCCGGCACAGCTCACTGAGGAAAGTCCAGA
TGACATGCCAATGCCCCTCGGAGCGCATCCACCTTTGGTGCAGAACCACT
CAGCTGTGGGGTAGCGAAACTTGGTACGATAGTGTCTGTGTTGAGGTTAG
TCAGTTGTTTCTTTGCGGTGCCCACAGAAAGACAGCGAAAACAATCTTCA
GTTTGTTTTGAAATCATGCTCTCTGAACTACGATGTGTACAGAAATTTCG
TAAACCTCTGATGGCAACATTGGAGTTGCAAGTTGATCTAAGTGTATTGC
ATAAAATATTCTACTAAGTACGTAGTACATGTAACGCAGTATGTGTATTG
CTTATCTCACGGAATTTTTTCGACTTGTACTTGTTGGCACTGAATGGGTC
GTTTCCTCAATCTCGGAGGAAAATTCCAGACAATTGCATGCACATCAATA
ATTATCCTTTGCCAGCATATCGTGTTGTCCTATGATATAGATGATACATC
AGGGGGGTTACACATTTCTTTACTGTACGCGCATAGCTATCGCCCCTGAT
GACTTTAGACGCATTCAACTTTGTGGGTGATACACATTTTTTTAACCCCA
AACTAGACTTCAAATCCAGGAGGTCAGCCCATATCTGCAGTGCTTAACCA
AACATCTGTTCTTGTCGACAATTCTTTTCGAAGACTTTATTTATGCTGCT
GGGAGGTGAGATAGAGAGTTTGAGACAAATTGGAGCCAACTAAGATACCA
CTGCGATCAGTTTCCTCTGACACCACGAGATATTTCTTCCCTTGCGATGA
AAAAACGCGTTTTGGTCTCAAGCGAAATCTGTAGTGAACCAAGGCGGTGT
TTAACGGGACAATTAATTACTTGGTCAAAATTACTCTTCGAATGTTTTGA
TCATGATGTTCGGAGACAGCGTGCAATCTTTGAGATGAATCAGAGTGGAG
CATAAAACACTCCGGCCATATATTTTCGACAACGGCAGGTATTTTCGCCT
TGCTCCATACAAGATTGCCGTCATCTCTGCGGCCAAAGTCATTCTGTGTA
AATCTACGCATCACTGTCGGTGCGACGACTGGCAGGATGGGCTCATCACT
TGACCGGCAAAGCCATGATACTGCGATTTGGTCAAGAGTATTGCAAAGAA
TCTCCCCACACATCTCTAACTGCCTGAACGCCGGATGTCATGTGCCTTCC
GTGGCGGAATGTTCAGAAAAATCGCGTGTTTCATTGAAGGCAAAAATAGT
CGTTGGTCGTCCAACTCCCGGAATTTATTGACACGGGTGGAACCGTTCGG
CGTGCTGACCAAGTTAAACGATGAGGCTCGCTTTTGTGAACCACTCGATG
TAACCAATATGGAAAATGTTCAGGTTTTGGCAAGTTTTGTAGGTGTTCTG
TATCGTCACCTTTCACGCGAACACTAGACTATCTACGAGTTACACTCGTG
CGGCTTACACCTACCTATATACGAGTCCGGGGGCCAGGACGAAAGCGATG
GTTCTGCTTTCCAAACCACTATACACACTGCGCATTTATTGCTACACATA
TATACTTAAAGGTCCAATACCGTGTCGCCCAATGACTGTCCAGGTTTGCG
TTCGCCTGGGGAGTGTCAAGTATGGCGAAGAACAACGCAACCCTGTTGGC
GAACGGCAACAGCAATCACGTTGGCAGCGGGGGAACAACCGACTCTGGGG
TGGTCGCAAGAGTGGGCAGGGATTGGATTCCGTACCAACGATATCTCACC
GAGCCTGCGTTGAGTTTATCGACGTAGAACTCTCGCTCGTGGTTGGCATA
TGTCGGACAGAGCGCAGCCGGTGGGTACTAGCTCTGAACTCTTTTTTAAC
AGTTTTTAGCTGTAAAATTTCGTGTGCCCTTACACGTATGTTACACTCTA
AAGCGCACTTTTACTGAATGGCTGCCCTCTCGCCACTTTCGCGATATTTT
CCCCTTTGAACGAAGGCGTTGATTGACTTTTTGAGACTTACTACATATCG
CAGGACGTGTTCTGATACGGAAAGCGCCAGAGAAATGTTGACCCGTGTCG
AAACCTTTCGTCACCTGGCACAGTGATGGCGTTTCCTGAATGATTATCAC
CGCCTGTTACCGATACAAGGTCGAACGCCAGCTAGCATTTGGCGACATAA
CGACGTCAAGTTATCGAGGCAGCCAGCTCACTTCCTATCGCTCGCAGGAA
TATTTTTAAAGGTAGCAGGGCACAAACTCCGTCCACGTTTGTTTCAAGAA
AAATATTCGCCCTCCACATTACGTACACACTGACGTCAACTCGTTCCGAC
GTGATCTGCTATTCTTACTTTTCACCCCCAAATCGTAGAGGGTGGAGAAT
AGCGGAGATCACATCTCTTGACGCTCGGGCTTTGAGGTTCGATCTCGGTG
TCAATCTCTCTCGCGTGGAGGAGTTTCGGGAAGCACTAGAAAGTGCGAAG
GACGCAACGTTTGCCAAGCGAATTCCGAAGAAACCTATCTCTTATGCCGG
GGACACCAGCCACGCGCCAGGAGGCGAGGGGACCCGTTCGACGCCAATGT
TGCGGGTGAGAATACATGCCTTCAACAATTGAGATGTCGGTGGGGCCGCT
GGCGTAGTATGCCTTAACTGACAGCAGCGTCTTCAACTTGGCTAAAGTTC
GTTCGCTCTCACATTCCGATTCGTTGAATATACTATAACTATTGTTAGTA
TCGGACGTTCTGATAAGCACGCCGGGGGGTGGCAAAAGGGGAAGGGTATT
TTTCTCAGTTTATCTTTCTCCACGGAATTTCCATCATGTTCACATTCCGT
CCTTCCGCAACGCTTGTGTTCCCCGAGTGATTTAATTTCAGCTTGAACTC
TCGATGTAGTAGGGTTGCTTTTTGTAGAACAATAGCTGACTACCCACCTC
TTGAACGTTCCTGCTGTACGCTGAATCAAGCGGTCTGTTCTGTTTATGCC
CAGACACTATATTGAATTCCAGTAAAAGGTTGATTACCATTCAAATCTCT
TTTATGCGGCCGTTGCGTCCGTAGTGGAGGTAGAGATCATGGCGGTGTCT
TATAGGTCGATGTATACAGTCGTGCACTGAGATGCAAGTCCGGTTGATGT
GTACCACGCGCACTCAGGTAGGATGAGAGTCATGTCCATTTACCTGAGAT
GGGTAAGGGCGACAAACGAAAAGAATTTCATGTTGCAAAGAGGGTCGAAT
AATTCGCGCGTCAATTGTAGTAATGGTATTTTCTCCACGTCTCTCTACAC
CTCTGTCCATTATAGACGTTTTCAGCAGGGGCGTTAGATGAACTATATCT
ATTACAGGCGACCACACACTCCTGTCGTCCTAGGAGGCGTGGCAAGCGCG
TAATACATCAGTCGCCATTGCCTCCGTACCTTCCCTCCCTTGCCGCTGCC
CCGTCATTGTCGGCCCGCGTTTTTGTTACGATATTGCGAAACCGCTTGTG
CCATTATCCCCACTACCGCACAGTCGTCGCTACCCTTTCCCGCAGGATCA
ATCTCGCCGTCTATCGAACCCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1827:12090..16013-

>mRNA_H-paniculata_contig1827.4460.1 ID=mRNA_H-paniculata_contig1827.4460.1|Name=mRNA_H-paniculata_contig1827.4460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig1827:12090..16013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGGTAGTGGTGGCGAGGCAGCGGAAGAGACCCGCGAAAAGGGAGAGGG
AGAAAGAGAGGTAGCTCAGCAGAGGTCTTCTTTCGATGGTAGCAGAGATT
CTAGTGTTGTTCGTGGAGTTCGGTTCATGGAGTTTTCGGAGCTTCGAACA
GCGTGCTTGCTCTCACCATCCTCTACTAGCTTGGAGCGTGGTAGTGGTGG
CGAGGCAGCGGAAGAGACCCGCGAAAAGGGAGAGGGAGAAAGAGAGGTAG
CTCAGCAGAGGTCTTCTTTCGATGGTAGCAGAGATTCTAGTGTTGTTCGT
GGAGTTCGGTTCATGGAGTTTTCGGAGCTTCGAACAGCGTGCTTGCTCTC
ACCATCCTCTACTAGCTTGGAGGTTTGCGTTCGCCTGGGGAGTGTCAAGT
ATGGCGAAGAACAACGCAACCCTGTTGGCGAACGGCAACAGCAATCACGT
TGGCAGCGGGGGAACAACCGACTCTGGGGTGGTCGCAAGAGTGGGCAGGG
ATTGGATTCCGTACCAACGATATCTCACCGAGCCTGCGTTGAGTTTATCG
ACGTAGAACTCTCGCTCGTGGTTGGCATATGTCGGACAGAGCGCAGCCGG
TTTGCGTTCGCCTGGGGAGTGTCAAGTATGGCGAAGAACAACGCAACCCT
GTTGGCGAACGGCAACAGCAATCACGTTGGCAGCGGGGGAACAACCGACT
CTGGGGTGGTCGCAAGAGTGGGCAGGGATTGGATTCCGTACCAACGATAT
CTCACCGAGCCTGCGTTGAGTTTATCGACGTAGAACTCTCGCTCGTGGTT
GGCATATGTCGGACAGAGCGCAGCCGAGGGTGGAGAATAGCGGAGATCAC
ATCTCTTGACGCTCGGGCTTTGAGGTTCGATCTCGGTGTCAATCTCTCTC
GCGTGGAGGAGTTTCGGGAAGCACTAGAAAGTGCGAAGGACGCAACGTTT
GCCAAGCGAATTCCGAAGAAACCTATCTCTTATGCCGGGGACACCAGCCA
CGCGCCAGGAGGCGAGGGGACCCGTTCGACGCCAATGTTGCGGAGGGTGG
AGAATAGCGGAGATCACATCTCTTGACGCTCGGGCTTTGAGGTTCGATCT
CGGTGTCAATCTCTCTCGCGTGGAGGAGTTTCGGGAAGCACTAGAAAGTG
CGAAGGACGCAACGTTTGCCAAGCGAATTCCGAAGAAACCTATCTCTTAT
GCCGGGGACACCAGCCACGCGCCAGGAGGCGAGGGGACCCGTTCGACGCC
AATGTTGCGGTCGTCGCTACCCTTTCCCGCAGGATCAATCTCGCCGTCTA
TCGAACCCAGGTCGTCGCTACCCTTTCCCGCAGGATCAATCTCGCCGTCT
ATCGAACCCAGG
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