mRNA_H-paniculata_contig18239.4443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18239.4443.1
Unique NamemRNA_H-paniculata_contig18239.4443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18239.4443.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 ELLSGPNRCSLESCAPLLAASGPLFVEALLCLYRGRGMHHDALALATEERC 153
            ELLSGPNRCSL +CAPLLAASGP F+EALLCLYRGRG+H DALALATE+RC
Sbjct:  549 ELLSGPNRCSLAACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRC 599
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BLAST of mRNA_H-paniculata_contig18239.4443.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.400e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   10 SGPNRCSLESCAPLLAASGPLFVEALLCLYRGRGMHHDALALATEERC 153
            S P  C L + AP+LAA+G  FVEALL LYR +G+H +AL L +EERC
Sbjct:  541 SRPCHCDLSATAPVLAAAGAPFVEALLWLYRSKGLHREALGLLSEERC 588
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18239.4443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8R8_ECTSI1.380e-2286.27CNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YS55_9STRA1.400e-958.33CNH domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18239contigH-paniculata_contig18239:4392..4553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G8R8
Preferred nameVPS39
KEGG koko:K17267,ko:K20183
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005911,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008593,GO:0009056,GO:0009267,GO:0009506,GO:0009605,GO:0009705,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023056,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032006,GO:0032008,GO:0032879,GO:0032889,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042594,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044087,GO:0044088,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055044,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0099022,GO:0099023,GO:0140056,GO:1902500,GO:1902531,GO:1902533,GO:1902774,GO:1903432,GO:1904263,GO:1990126,GO:1990816
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759,KOG2063@1,KOG2063@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929417.463318-CDS-H-paniculata_contig18239:4391..45531622929417.463318-CDS-H-paniculata_contig18239:4391..4553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18239 4392..4553 +
1691480852.5551388-CDS-H-paniculata_contig18239:4391..45531691480852.5551388-CDS-H-paniculata_contig18239:4391..4553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18239 4392..4553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18239.4443.1prot_H-paniculata_contig18239.4443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18239 4392..4553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18239.4443.1

>prot_H-paniculata_contig18239.4443.1 ID=prot_H-paniculata_contig18239.4443.1|Name=mRNA_H-paniculata_contig18239.4443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
ELLSGPNRCSLESCAPLLAASGPLFVEALLCLYRGRGMHHDALALATEER
CEK*
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mRNA from alignment at H-paniculata_contig18239:4392..4553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18239.4443.1 ID=mRNA_H-paniculata_contig18239.4443.1|Name=mRNA_H-paniculata_contig18239.4443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig18239:4392..4553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCCTGAGCGGGCCGAACCGGTGCAGCCTTGAATCCTGCGCCCCGCT
TTTAGCCGCCAGCGGTCCGCTGTTCGTCGAAGCGTTGCTCTGTCTGTACC
GCGGCCGGGGGATGCACCACGACGCGCTCGCGCTTGCTACTGAGGAAAGG
TGTGAAAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18239:4392..4553+

>mRNA_H-paniculata_contig18239.4443.1 ID=mRNA_H-paniculata_contig18239.4443.1|Name=mRNA_H-paniculata_contig18239.4443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig18239:4392..4553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCCTGAGCGGGCCGAACCGGTGCAGCCTTGAATCCTGCGCCCCGCT
TTTAGCCGCCAGCGGTCCGCTGTTCGTCGAAGCGTTGCTCTGTCTGTACC
GCGGCCGGGGGATGCACCACGACGCGCTCGCGCTTGCTACTGAGGAAAGG
TGTGAAAAATAGGAGCTCCTGAGCGGGCCGAACCGGTGCAGCCTTGAATC
CTGCGCCCCGCTTTTAGCCGCCAGCGGTCCGCTGTTCGTCGAAGCGTTGC
TCTGTCTGTACCGCGGCCGGGGGATGCACCACGACGCGCTCGCGCTTGCT
ACTGAGGAAAGGTGTGAAAAATAG
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