mRNA_H-paniculata_contig1822.4435.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1822.4435.1
Unique NamemRNA_H-paniculata_contig1822.4435.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1822.4435.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.030e-13
Identity = 51/120 (42.50%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:   22 RPRLATSSSLSLFGVASLKDEMGPWKVTDLEQAVCFRNKSVSEASQSVAPLLPTPAXXXXXXXXXXXXPLGSQQPRSREEDTDGPDPALWSLSNGRDTVGLKERVEASWRGDPQIPPTAR 381
            R  LA  + L L     L     P KV+DL  AV  R + V+ AS+SVA  LP P             P     P +   DTDGPDPALW+LS+G +T GL ERVE SW   P+  P AR
Sbjct:  228 RTLLAFGTCLQLPSFFFLLTPPLPLKVSDLNNAVARRTQVVAAASRSVA--LPQPPAAAGT-------PAAVSPPWALRGDTDGPDPALWTLSSGHETAGLAERVEGSWSSPPRQSPPAR 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1822.4435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KN23_9PHAE8.030e-1342.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1822contigH-paniculata_contig1822:2251..3034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.236399-CDS-H-paniculata_contig1822:2251..26201622929416.236399-CDS-H-paniculata_contig1822:2251..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1822 2252..2620 -
1691480852.0712879-CDS-H-paniculata_contig1822:2251..26201691480852.0712879-CDS-H-paniculata_contig1822:2251..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1822 2252..2620 -
1622929416.2794397-CDS-H-paniculata_contig1822:2935..30341622929416.2794397-CDS-H-paniculata_contig1822:2935..3034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1822 2936..3034 -
1691480852.090152-CDS-H-paniculata_contig1822:2935..30341691480852.090152-CDS-H-paniculata_contig1822:2935..3034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1822 2936..3034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1822.4435.1prot_H-paniculata_contig1822.4435.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1822 2252..3034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1822.4435.1

>prot_H-paniculata_contig1822.4435.1 ID=prot_H-paniculata_contig1822.4435.1|Name=mRNA_H-paniculata_contig1822.4435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
AVVAAAERPRLATSSSLSLFGVASLKDEMGPWKVTDLEQAVCFRNKSVSE
ASQSVAPLLPTPATATATAAAAAAAPLGSQQPRSREEDTDGPDPALWSLS
NGRDTVGLKERVEASWRGDPQIPPTARLRAVARAMVAGAARVQGESKDVQ
GGGYGA
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mRNA from alignment at H-paniculata_contig1822:2251..3034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1822.4435.1 ID=mRNA_H-paniculata_contig1822.4435.1|Name=mRNA_H-paniculata_contig1822.4435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=784bp|location=Sequence derived from alignment at H-paniculata_contig1822:2251..3034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGTGGCGGCGGCGGAGAGACCAAGGTTGGCCACTTCGTCTTCGTT
GAGCCTGTTTGGTGTGGCGAGCCTCAAGGATGAAATGGGGCCTTGGAAGG
TGTGTGTGTGTGTGTGTGTGTGGATTGCTCGGTAAAAAATGATGAATGAT
CTCCGCTGATACTGTTTTTGCCTTTTTGTACTTTTGTATCGGGTTTGCTT
TTCGCTGTCTTGTGTATTTAGTTACGGGATAATGTATTTGTTTTTTCATG
CATTGCATTTAATTGAGGTACAATATCGCCACGTTGTACCCGGTGTCGTC
TACTGTAATGCGTGTTTTCATCTGCACGATAAACCTGCCGAGAGTGCTTG
TTGTACCGAGCTACCCTTACCATGTTTTGACACTGCGCCCCCGCCCGCTC
CCATAATCCTGCAGGTGACGGACCTCGAACAAGCCGTATGCTTCAGGAAC
AAATCCGTCTCCGAAGCTTCTCAATCCGTCGCACCACTACTACCAACACC
AGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCCCCTCTCGGGT
CACAGCAGCCAAGGTCAAGAGAAGAGGATACCGACGGGCCAGACCCAGCG
CTCTGGTCCCTATCTAACGGCCGCGATACCGTGGGTCTCAAAGAGAGAGT
AGAAGCCTCCTGGAGAGGGGACCCGCAAATCCCACCAACTGCAAGGTTAA
GAGCCGTGGCGAGGGCAATGGTGGCCGGCGCGGCGAGGGTACAAGGGGAG
AGCAAGGACGTGCAGGGGGGTGGGTACGGGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1822:2251..3034-

>mRNA_H-paniculata_contig1822.4435.1 ID=mRNA_H-paniculata_contig1822.4435.1|Name=mRNA_H-paniculata_contig1822.4435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig1822:2251..3034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGTGGCGGCGGCGGAGAGACCAAGGTTGGCCACTTCGTCTTCGTT
GAGCCTGTTTGGTGTGGCGAGCCTCAAGGATGAAATGGGGCCTTGGAAGG
CGGTGGTGGCGGCGGCGGAGAGACCAAGGTTGGCCACTTCGTCTTCGTTG
AGCCTGTTTGGTGTGGCGAGCCTCAAGGATGAAATGGGGCCTTGGAAGGT
GACGGACCTCGAACAAGCCGTATGCTTCAGGAACAAATCCGTCTCCGAAG
CTTCTCAATCCGTCGCACCACTACTACCAACACCAGCAACAGCAACAGCA
ACAGCAGCAGCAGCAGCAGCAGCCCCTCTCGGGTCACAGCAGCCAAGGTC
AAGAGAAGAGGATACCGACGGGCCAGACCCAGCGCTCTGGTCCCTATCTA
ACGGCCGCGATACCGTGGGTCTCAAAGAGAGAGTAGAAGCCTCCTGGAGA
GGGGACCCGCAAATCCCACCAACTGCAAGGTTAAGAGCCGTGGCGAGGGC
AATGGTGGCCGGCGCGGCGAGGGTACAAGGGGAGAGCAAGGACGTGCAGG
GGGGTGGGTACGGGGCGGTGACGGACCTCGAACAAGCCGTATGCTTCAGG
AACAAATCCGTCTCCGAAGCTTCTCAATCCGTCGCACCACTACTACCAAC
ACCAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCCCCTCTCG
GGTCACAGCAGCCAAGGTCAAGAGAAGAGGATACCGACGGGCCAGACCCA
GCGCTCTGGTCCCTATCTAACGGCCGCGATACCGTGGGTCTCAAAGAGAG
AGTAGAAGCCTCCTGGAGAGGGGACCCGCAAATCCCACCAACTGCAAGGT
TAAGAGCCGTGGCGAGGGCAATGGTGGCCGGCGCGGCGAGGGTACAAGGG
GAGAGCAAGGACGTGCAGGGGGGTGGGTACGGGGCG
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