mRNA_H-paniculata_contig18186.4417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18186.4417.1
Unique NamemRNA_H-paniculata_contig18186.4417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18186.4417.1 vs. uniprot
Match: D7G085_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G085_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 8.250e-87
Identity = 141/286 (49.30%), Postives = 181/286 (63.29%), Query Frame = 1 
Query:   31 MAKGEESLPLT------GASNAVGHRDRRIMLGITAAFQILTFIFCLPALVPMWHSHYFSHSEIEQRAWTWFGMNSLWWSLPLLYVVFQPDNGPAAAAGCLLCAVFWAYLDIVMITQWARGILAWSAVGDFAIHTALCVFCTSAAWGGVASPVHASRSDGGNTRRRAFRKWVLVATSIQLFMAFVACWPMGHLSVIPPRVEREPAPWEWNSAVLFTLMLAVLWAAFLTRGGYVDQTKRAMCMWSAIVFSGWFVMSSFDWPYLGMIGHNLIISVVLAVDASVLFVAA 870
            MA  EE+LPL       G  N  GH  +++ LG T A+ ++  + C PA+VP+WH  Y++    EQR WTW G N+LW +L LL+ +   DNGP  A  CLLC+V W YL +V+++Q  RG L   A+ D  +H  + + C  AAW GVA     +RSDG +T RR  RKW LV+ S  LF AF+ C     L +IPP  ERE APWEWNSA+LF + LAVLWAAFLTRGG VD+TKRA C W A+ FSG FV+ SF W  LG+   ++  SVVLAV+ +VL  AA
Sbjct:    2 MAAPEETLPLRVSVNGDGPGNHDGHHGKKLALGATVAYLLVFALICFPAVVPLWHPTYYAELGAEQRGWTWLGANALWLALALLWTLLHLDNGPCVATACLLCSVLWFYLSLVLLSQACRGQLPLMAIADALVHLTMLIVCFRAAWVGVAKKSQKARSDGSSTWRRVLRKWALVSASATLFAAFLGCCS-SSLPLIPPVSERESAPWEWNSAILFAMTLAVLWAAFLTRGGLVDETKRAACAWIALSFSGSFVLCSFSWQALGLDARSVTTSVVLAVETAVLAAAA 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18186.4417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G085_ECTSI8.250e-8749.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18186contigH-paniculata_contig18186:2573..4785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000290.1
Exons1
Model size2213
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18186.4417.1prot_H-paniculata_contig18186.4417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18186 2603..3454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.2291784-UTR-H-paniculata_contig18186:2572..26021622929413.2291784-UTR-H-paniculata_contig18186:2572..2602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18186 2573..2602 +
1691480850.5428805-UTR-H-paniculata_contig18186:2572..26021691480850.5428805-UTR-H-paniculata_contig18186:2572..2602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18186 2573..2602 +
1622929413.2542772-UTR-H-paniculata_contig18186:3454..47851622929413.2542772-UTR-H-paniculata_contig18186:3454..4785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18186 3455..4785 +
1691480850.558793-UTR-H-paniculata_contig18186:3454..47851691480850.558793-UTR-H-paniculata_contig18186:3454..4785Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18186 3455..4785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.2439218-CDS-H-paniculata_contig18186:2602..34541622929413.2439218-CDS-H-paniculata_contig18186:2602..3454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18186 2603..3454 +
1691480850.5513966-CDS-H-paniculata_contig18186:2602..34541691480850.5513966-CDS-H-paniculata_contig18186:2602..3454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18186 2603..3454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18186.4417.1

>prot_H-paniculata_contig18186.4417.1 ID=prot_H-paniculata_contig18186.4417.1|Name=mRNA_H-paniculata_contig18186.4417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=284bp
MAKGEESLPLTGASNAVGHRDRRIMLGITAAFQILTFIFCLPALVPMWHS
HYFSHSEIEQRAWTWFGMNSLWWSLPLLYVVFQPDNGPAAAAGCLLCAVF
WAYLDIVMITQWARGILAWSAVGDFAIHTALCVFCTSAAWGGVASPVHAS
RSDGGNTRRRAFRKWVLVATSIQLFMAFVACWPMGHLSVIPPRVEREPAP
WEWNSAVLFTLMLAVLWAAFLTRGGYVDQTKRAMCMWSAIVFSGWFVMSS
FDWPYLGMIGHNLIISVVLAVDASVLFVAALLN*
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mRNA from alignment at H-paniculata_contig18186:2573..4785+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18186.4417.1 ID=mRNA_H-paniculata_contig18186.4417.1|Name=mRNA_H-paniculata_contig18186.4417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2213bp|location=Sequence derived from alignment at H-paniculata_contig18186:2573..4785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTGTGATAAAACAGACCGGAGAGAAGATGGCGAAGGGCGAGGAGAG
CCTGCCACTGACGGGTGCATCAAATGCTGTCGGACACCGTGATCGTCGAA
TAATGCTTGGTATAACGGCAGCGTTTCAGATACTCACTTTTATATTCTGT
CTTCCAGCACTCGTACCCATGTGGCATTCTCACTACTTTTCACACAGCGA
AATTGAGCAGCGTGCGTGGACATGGTTTGGAATGAACTCTCTGTGGTGGT
CACTACCTCTGCTCTATGTGGTTTTTCAGCCGGACAACGGACCTGCGGCA
GCCGCAGGGTGCCTCTTATGCGCCGTGTTTTGGGCATACCTGGACATTGT
CATGATTACGCAATGGGCCAGAGGGATCCTAGCCTGGTCTGCTGTCGGTG
ATTTTGCCATCCATACCGCTCTCTGCGTGTTTTGCACCAGCGCGGCATGG
GGCGGCGTGGCGTCCCCGGTTCATGCCTCGCGGTCGGATGGCGGCAACAC
AAGACGCAGGGCGTTCCGCAAGTGGGTCCTCGTTGCGACTAGCATTCAAT
TGTTCATGGCTTTCGTGGCCTGTTGGCCGATGGGGCATCTCTCAGTCATC
CCGCCACGGGTTGAAAGGGAACCTGCCCCGTGGGAGTGGAATTCTGCTGT
GTTATTCACGTTGATGCTTGCCGTACTGTGGGCGGCTTTCCTCACCCGTG
GTGGGTATGTCGACCAGACAAAGCGAGCAATGTGCATGTGGTCCGCGATT
GTTTTTTCCGGATGGTTCGTCATGTCCTCATTCGATTGGCCGTATCTAGG
GATGATAGGACACAATCTCATAATTTCCGTGGTTCTTGCCGTAGATGCCT
CCGTCTTGTTTGTCGCAGCGCTGTTAAACTAAGACGAATCGCTGGGGATT
TGTCTCGCACCTCTCTCAGCTCTGACCGCTCCCTCACTGGTGGTCGCATC
ATCGTGTATAAGTTTTGGAGTGCGGTGAAGAACGTGTGTTGGCACCATGC
CATGGGTTACATGCGTTTGTAGTAAAAGAAGTAGCCGTGGGCGTTCTCCA
TCAAGGTCCGTGGGTATTGCGTAAGGAGGGTGTGTATTATTTCATGACGA
GCTTCATCCAAACGCACGCCGAAATGACTAGCAAGTGTGCGTGCAAGAAT
GTTGCACGTGTTATTTTTGGAATTCATAAGGGAATGACCATCTCGTTTTT
AAGCTCGGACACACCTAAGGTCGCGTTTTGAAAATGTAAATGTCGGATCG
TTGTTTTTTTCAATTCATGGCATGGAGCACTTGCCCATGCCGTCGTTTGT
TTAGGCTACGTTGGAATTCACGTAAGTCGCGTGCGGACCACTTCCTGCGG
GTCGTGCCCGTTACTAATACAGTAGATGTTGACGGTTGACGCGGCCATCT
CGTGTCGAATCACTTGAACGGGCGATGCGTTATACGTTTTTGTCGTACTT
ATTCACCGTACGTGGATGGTTGCACGAGACACCAGACTGCTTGCCTGTCT
TTTTGTATATTGAGCGCGATTTGTTTGTCTTGGTCTCTTGCTTCTTCAAA
GTTTTTCAGATCGAGGTGGTGTAGGTTATATATGGAACTCTGGATTGTGG
ATGATGCTCTTAGTCCATAGGGAATTAGTGGTGCTGTGCTACACCTGATA
AGAGTATGACGTGGTACACATATGGTATTTGTAGAGGGGATGCATTGTGT
ACTGCTTTTTTTCGGGTTGTGGAGTACACGTACGGTTCTTTGGTTTGTTG
GGGTGAACAATGGCGCCCATTCACGGTAGTTAGACTGGAGCTTGAAGTTG
GGGAAACTGTGATCTTGCCAAATTACACGCTGATCCGTTAGTGTAGAAAT
AGTGTCAGACCGTTACATGTTGAACTACTTTAATCGCCTTCAGTCGCTAG
GAAGGATTCAGTCAGATGCGTAGCTGATTGTTTTTGTGTTGTGTGTAGGC
GTTTTGATCAGTAAACATCGCTACACATCCCAAGTATTCACATGACTCAC
CACCTGTTTTCCATCCTTCTAGTGAACGTACCTCGCGACCGTTGTGTTGT
TTGGCTAAGCGTTCGGATGGGTACTTCCTCCCGTTCACCCAAAAGAGAAA
TTCATCTCGTTGGCCGGGGAGCTAATATTCCCGCGGGGCCTCATGTTTTC
GAGGATGGCCATGTTTCAACATCAAGTCTAACCCTGTAACCTCTAATGCT
TCCGATCTTTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18186:2573..4785+

>mRNA_H-paniculata_contig18186.4417.1 ID=mRNA_H-paniculata_contig18186.4417.1|Name=mRNA_H-paniculata_contig18186.4417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at H-paniculata_contig18186:2573..4785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGGCGAGGAGAGCCTGCCACTGACGGGTGCATCAAATGCTGT
CGGACACCGTGATCGTCGAATAATGCTTGGTATAACGGCAGCGTTTCAGA
TACTCACTTTTATATTCTGTCTTCCAGCACTCGTACCCATGTGGCATTCT
CACTACTTTTCACACAGCGAAATTGAGCAGCGTGCGTGGACATGGTTTGG
AATGAACTCTCTGTGGTGGTCACTACCTCTGCTCTATGTGGTTTTTCAGC
CGGACAACGGACCTGCGGCAGCCGCAGGGTGCCTCTTATGCGCCGTGTTT
TGGGCATACCTGGACATTGTCATGATTACGCAATGGGCCAGAGGGATCCT
AGCCTGGTCTGCTGTCGGTGATTTTGCCATCCATACCGCTCTCTGCGTGT
TTTGCACCAGCGCGGCATGGGGCGGCGTGGCGTCCCCGGTTCATGCCTCG
CGGTCGGATGGCGGCAACACAAGACGCAGGGCGTTCCGCAAGTGGGTCCT
CGTTGCGACTAGCATTCAATTGTTCATGGCTTTCGTGGCCTGTTGGCCGA
TGGGGCATCTCTCAGTCATCCCGCCACGGGTTGAAAGGGAACCTGCCCCG
TGGGAGTGGAATTCTGCTGTGTTATTCACGTTGATGCTTGCCGTACTGTG
GGCGGCTTTCCTCACCCGTGGTGGGTATGTCGACCAGACAAAGCGAGCAA
TGTGCATGTGGTCCGCGATTGTTTTTTCCGGATGGTTCGTCATGTCCTCA
TTCGATTGGCCGTATCTAGGGATGATAGGACACAATCTCATAATTTCCGT
GGTTCTTGCCGTAGATGCCTCCGTCTTGTTTGTCGCAGCGCTGTTAAACT
AAATGGCGAAGGGCGAGGAGAGCCTGCCACTGACGGGTGCATCAAATGCT
GTCGGACACCGTGATCGTCGAATAATGCTTGGTATAACGGCAGCGTTTCA
GATACTCACTTTTATATTCTGTCTTCCAGCACTCGTACCCATGTGGCATT
CTCACTACTTTTCACACAGCGAAATTGAGCAGCGTGCGTGGACATGGTTT
GGAATGAACTCTCTGTGGTGGTCACTACCTCTGCTCTATGTGGTTTTTCA
GCCGGACAACGGACCTGCGGCAGCCGCAGGGTGCCTCTTATGCGCCGTGT
TTTGGGCATACCTGGACATTGTCATGATTACGCAATGGGCCAGAGGGATC
CTAGCCTGGTCTGCTGTCGGTGATTTTGCCATCCATACCGCTCTCTGCGT
GTTTTGCACCAGCGCGGCATGGGGCGGCGTGGCGTCCCCGGTTCATGCCT
CGCGGTCGGATGGCGGCAACACAAGACGCAGGGCGTTCCGCAAGTGGGTC
CTCGTTGCGACTAGCATTCAATTGTTCATGGCTTTCGTGGCCTGTTGGCC
GATGGGGCATCTCTCAGTCATCCCGCCACGGGTTGAAAGGGAACCTGCCC
CGTGGGAGTGGAATTCTGCTGTGTTATTCACGTTGATGCTTGCCGTACTG
TGGGCGGCTTTCCTCACCCGTGGTGGGTATGTCGACCAGACAAAGCGAGC
AATGTGCATGTGGTCCGCGATTGTTTTTTCCGGATGGTTCGTCATGTCCT
CATTCGATTGGCCGTATCTAGGGATGATAGGACACAATCTCATAATTTCC
GTGGTTCTTGCCGTAGATGCCTCCGTCTTGTTTGTCGCAGCGCTGTTAAA
CTAA
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