mRNA_H-paniculata_contig18164.4410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18164.4410.1
Unique NamemRNA_H-paniculata_contig18164.4410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18164.4410.1 vs. uniprot
Match: D7FT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT47_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.710e-58
Identity = 180/435 (41.38%), Postives = 230/435 (52.87%), Query Frame = 1 
Query:    1 RLRQGKHDEASFDLRDAVASGLGNVEEAKALLVEAEAGSSLAGCQDPEAKGRELLRAGDSRQAAKYFREAVSRARRCLRLQRPMSDSSPDDGDQALST---LARNLRMEAITVARAGDAASAENLLRGGLRELQAEGRIAADGGVRPRGEGGVLKAEGEGLVIAALGGLMAQQGKHREAVESLRAAASVLEEGIAAAD-DKNGNGNDGSATPAATSGATNTNSTGIASTSTRISSLKNALGGVLSSLGTSLLALEE----------SGTTAGLGSAVTAAVPAGGQTE-----PHGKDNNSSDXXXXXXXXXXXXXXXXXXXVLD--DHVXXXXXXXXXXXXXXXXXXXXHEVEAVGQXXXXXXXXXQSAKILDALSEAHARAGRWELARSSAEQSLTAWRSLGDAGRTGAAASMLSLGHLVLQLHGVGAGLEEA 1242
            R R G  D A  DLR ++A+G  + +EA+ALL+EAEAG++++ C DPEA+GRE LR G  R+AAK FR+A SRARR          +  + G+ A++T   L+RNLR+E I VA AGD  SAE LLR  LR+L+  G                   E EGL +AALG L+AQ+GKH +A+E LR A +VL+E IA    ++ G  N  + T A +S  T + + G      RI++L   L G L+ LGTSLLA E           S TT      VT  V  GG  +     P    ++                      VL     +                        AVG+         Q+AK+LD LSEA+ R  RWE AR +AEQSLTAWRSLG AGR GAAAS+LSLGHL+LQLHGVGAG EEA
Sbjct:  147 RFRLGLFDGACSDLRSSLAAGTSSGDEARALLLEAEAGAAMSSCPDPEAEGREHLRQGRGREAAKSFRDAASRARR------RKDAAGAEAGEGAVATTVALSRNLRLEGIAVAMAGDPPSAEMLLRTALRDLRVGGXXXXXXXXXX------XXXEEEGLTLAALGSLLAQRGKHADALEPLREAVAVLDEAIAGVSANEGGVANSSAGTNARSSPPTPSITEG------RITALTRTLTGTLAFLGTSLLAPEVQPSANYGSNGSSTTTTSSGGVTPGVMKGGAEKVTVPAPGFSCDDKGPIVADSGEAGSSKEADEAIDVLKRAHEMLKAETVAMATAGPGQKGGLAGVYSAVGESRGEADVRKQTAKVLDTLSEAYGREKRWERARLAAEQSLTAWRSLGVAGRVGAAASLLSLGHLLLQLHGVGAGFEEA 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18164.4410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT47_ECTSI1.710e-5841.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18164contigH-paniculata_contig18164:170..3347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-19_003610.1
Exons5
Model size1242
Cds size1242
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18164.4410.1prot_H-paniculata_contig18164.4410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18164 170..3347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.5920153-CDS-H-paniculata_contig18164:169..3051622929412.5920153-CDS-H-paniculata_contig18164:169..305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 170..305 -
1691480850.3143692-CDS-H-paniculata_contig18164:169..3051691480850.3143692-CDS-H-paniculata_contig18164:169..305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 170..305 -
1622929412.6116576-CDS-H-paniculata_contig18164:876..9741622929412.6116576-CDS-H-paniculata_contig18164:876..974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 877..974 -
1691480850.3230062-CDS-H-paniculata_contig18164:876..9741691480850.3230062-CDS-H-paniculata_contig18164:876..974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 877..974 -
1622929412.6236274-CDS-H-paniculata_contig18164:1034..15301622929412.6236274-CDS-H-paniculata_contig18164:1034..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 1035..1530 -
1691480850.331297-CDS-H-paniculata_contig18164:1034..15301691480850.331297-CDS-H-paniculata_contig18164:1034..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 1035..1530 -
1622929412.635808-CDS-H-paniculata_contig18164:2549..29041622929412.635808-CDS-H-paniculata_contig18164:2549..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 2550..2904 -
1691480850.3446589-CDS-H-paniculata_contig18164:2549..29041691480850.3446589-CDS-H-paniculata_contig18164:2549..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 2550..2904 -
1622929412.647909-CDS-H-paniculata_contig18164:3190..33471622929412.647909-CDS-H-paniculata_contig18164:3190..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 3191..3347 -
1691480850.358336-CDS-H-paniculata_contig18164:3190..33471691480850.358336-CDS-H-paniculata_contig18164:3190..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18164 3191..3347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18164.4410.1

>prot_H-paniculata_contig18164.4410.1 ID=prot_H-paniculata_contig18164.4410.1|Name=mRNA_H-paniculata_contig18164.4410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp
RLRQGKHDEASFDLRDAVASGLGNVEEAKALLVEAEAGSSLAGCQDPEAK
GRELLRAGDSRQAAKYFREAVSRARRCLRLQRPMSDSSPDDGDQALSTLA
RNLRMEAITVARAGDAASAENLLRGGLRELQAEGRIAADGGVRPRGEGGV
LKAEGEGLVIAALGGLMAQQGKHREAVESLRAAASVLEEGIAAADDKNGN
GNDGSATPAATSGATNTNSTGIASTSTRISSLKNALGGVLSSLGTSLLAL
EESGTTAGLGSAVTAAVPAGGQTEPHGKDNNSSDNKSHDAASGSTGNGNG
NGEVLDDHVVDSVATGATTAAAATAAATVHEVEAVGQQRQQQRQQQQSAK
ILDALSEAHARAGRWELARSSAEQSLTAWRSLGDAGRTGAAASMLSLGHL
VLQLHGVGAGLEEA
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mRNA from alignment at H-paniculata_contig18164:170..3347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18164.4410.1 ID=mRNA_H-paniculata_contig18164.4410.1|Name=mRNA_H-paniculata_contig18164.4410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3178bp|location=Sequence derived from alignment at H-paniculata_contig18164:170..3347- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGAGGCAGGGAAAGCACGACGAGGCGTCCTTCGACCTCCGGGACGC
GGTAGCTTCTGGCTTGGGCAATGTGGAAGAGGCGAAAGCGTTGCTAGTCG
AGGCGGAGGCTGGGTCGTCGTTGGCTGGGTGCCAAGATCCCGAAGCAAAA
GGCAGAGGTTTGTGTTTGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT
GGTGGTGCATGATCGCCAGCTAGTTGACGTTTGGGGGTATTTTACATACC
CGGCGTTAGAAGGAGGAAATCACAATTGCCCGTTGAGGATTCTCATTAGG
TCTTTATTCATTGTGAAATATCACTATTTTGATAGTTTTCAAATGTTGGA
ATATTTTTGTTGATACTACTGCCCCTGCCTCGCCCCCCCCCTCCCCCTTG
CCCCTCTCCTCCCTCTACCATCGTTTCCCGTCCCCGTGAAAAGAGCTCCT
TCGAGCGGGAGACAGTCGGCAGGCAGCCAAATACTTCCGCGAAGCCGTCT
CCCGCGCCCGGCGGTGTCTTCGGCTTCAGCGGCCGATGTCCGACTCTAGT
CCCGACGATGGCGACCAAGCGTTGTCAACCCTCGCGCGCAACCTGAGGAT
GGAAGCCATTACTGTGGCGCGGGCGGGTGACGCTGCCTCGGCGGAGAACC
TGCTGAGAGGTGGCTTGAGAGAGTTGCAGGCGGAAGGACGTATAGCTGCG
GATGGCGGTGTTCGGCCGCGAGGGGAGGGGGGGGTGCTTAAGGCGGAAGG
CGAGGGGTTGGTGATAGCTGCGCTCGGGGGTTTGATGGCTCAACAAGGGT
GAGGGTCTGCTGGGGGGGGGGGTAGGGGGGGATATGTACTACACATGGTC
AGTAGCAGGAACAGCGAGAAGATGCTCCTTGCTTACCGCGTTCGTTTTTT
TTAACACAGGATGTTGCAGCGATTACGACTGAGTATGACAGAGCGTGTAT
CGACGATTTTTTCGTGCGACAAACAGGCAAGGGGTGGGGAGCAGGGGTAC
TCAAGCCCATCCCCCCACTCCTCCCTCCCTCCATTTCCTCCCCTCGTGTC
TTTTCCACGAGCGAGATATTTTGCTCTCCATACACGGCGTATCTTGTCCA
ACCCGTGGCGACCCGCCCTGGGGTGGTTCCTTGTTGAAAAGGATGGGCTC
ATGACCGTTGTATTCAATATGTGTATATTTTTCTCTGCATGGGGACAGGA
GAAAAGGAAAAAGGCACTACAGTGAAACGGATGGTGTCTCCTCAACTGAG
TCGTTCGTGGGGTAGTATAGTGTCGCTTTGCCTTGGAAAGGACATGCAGC
ATTTGCTTGTATATATGTAATGCACTGCAGTCAATATGTGGAATACGTAA
GCTGGAGTTCGAAGTTCACGTCGGGGTATTGTTGTGTATTAAATGCTACA
GCTTGTTCGTATTTTTTCCAGTCTATCTTATCCAATTTGTCACAGAAATC
ATATTTACCTTCAACTGTATACGCATAATATATACACACATGCGTGTGCA
TGTTACGATGATCACGTAAGAATACCTACTTTGAAGCAAGAGTTAAACGA
CTGGGTGGGTGATGCCGTGATTGCAATCTACAACATGGCCGTACCGTCTT
GCGTTACGTTATTACCTATTTTTCACCCAACGTCTTTTACCTCTTTGCTC
TATTTAAATTCCATTGTGTTTTCGACCGACTGATGCCCCCCCCCCCCCCC
CCATCCGAAGTATACGATTGTTTTTTTCGCTTTTTGTTTTTGGCGAGGGG
TTTCGCTCTCGTATACTTCCTTGTGTCCGCCCGCCCAACCATCCACCCGC
CCGCCCCTCCACTTCAGGAAACACCGCGAAGCTGTGGAGTCTCTCAGAGC
CGCTGCCTCCGTCCTTGAGGAGGGAATTGCCGCCGCCGACGACAAAAACG
GCAACGGCAATGACGGTTCCGCTACTCCAGCTGCTACTAGTGGTGCTACC
AACACTAATAGTACCGGTATCGCCTCTACTAGTACAAGGATTTCATCGCT
GAAGAACGCTCTCGGCGGGGTTCTTTCTTCCCTTGGGACCTCGCTGCTAG
CTCTGGAAGAATCAGGGACGACAGCAGGGCTAGGCTCCGCTGTCACCGCC
GCCGTCCCTGCGGGAGGACAAACAGAGCCACATGGTAAGGACAACAACAG
CAGCGATAACAAAAGCCACGACGCTGCCAGCGGTAGTACCGGTAACGGTA
ACGGTAACGGGGAGGTATTGGATGATCATGTGGTGGACAGCGTAGCGACG
GGGGCAACGACGGCAGCAGCGGCGACGGCAGCGGCGACGGTGCACGAAGT
TGAAGCTGTCGGTGTCCTCGAACGAGCATTGAGTATTCTCAGAGATGAAA
AAGTGGTCGTGGAGCGGGAGCAGCAGCAGCGGCAACAGCAGCGGCAGCAG
CAGCAATCGGCCAAGATTCTTGACGCCTTGTCAGAGGCACATGCCCGTGC
GGGACGATGGGAATTGGCCAGGTGTGTCGTAATAGGGTAATAATTGCGTC
TGATTGGGTAATGGTAAATACGTACATGCCTAGCTGGACGAAGGTGTACA
GCTTGTGTTGTGTTGTGTTGTGAAGTATGCGGAGTGACGGTCAAAGGGGA
TAATATGATGACGATCAGCAACAGTAACTCAAGAAGGAAAATAGGGTCAA
CGTTGAAGGTGCGTATATGTCAAGATATTGCTTGCTTTGTTTTCTTTCCC
CTCGCGTTTTCCATCTGTATATATTGCAATATTGGAGTCGTGAAGTTTGT
AATAGTGCTGCAATATAATGGTGTAGCGATGACGACTCATTAAGGTTTGT
ATCAGGTGCTTCTTATGTTGTCGTCACCGCAATGGTTGGAAAGCAGATGA
CCATGATGGTGCTGAGAGGATTATTTGGATAGCGTGTTCCAGAGCTAAAA
AGGGAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGCTGAGGTTTGAAAC
CTTTTTAGAAGTCACTGGAGCAAAGATCAAATAAGTGTTCCGAATGTACG
ATGGCAATGACCTTGCGTTATTTCCCCCCTTGTGCACGTTAGGTCGTCTG
CCGAACAGTCTCTGACGGCATGGCGAAGCCTGGGAGATGCGGGCCGGACT
GGCGCAGCAGCTAGTATGCTGTCGTTGGGTCACCTTGTGCTGCAGCTGCA
TGGTGTTGGAGCCGGTCTCGAAGAGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig18164:170..3347-

>mRNA_H-paniculata_contig18164.4410.1 ID=mRNA_H-paniculata_contig18164.4410.1|Name=mRNA_H-paniculata_contig18164.4410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2484bp|location=Sequence derived from alignment at H-paniculata_contig18164:170..3347- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGAGGCAGGGAAAGCACGACGAGGCGTCCTTCGACCTCCGGGACGC
GGTAGCTTCTGGCTTGGGCAATGTGGAAGAGGCGAAAGCGTTGCTAGTCG
AGGCGGAGGCTGGGTCGTCGTTGGCTGGGTGCCAAGATCCCGAAGCAAAA
GGCAGAGAGGCTGAGGCAGGGAAAGCACGACGAGGCGTCCTTCGACCTCC
GGGACGCGGTAGCTTCTGGCTTGGGCAATGTGGAAGAGGCGAAAGCGTTG
CTAGTCGAGGCGGAGGCTGGGTCGTCGTTGGCTGGGTGCCAAGATCCCGA
AGCAAAAGGCAGAGAGCTCCTTCGAGCGGGAGACAGTCGGCAGGCAGCCA
AATACTTCCGCGAAGCCGTCTCCCGCGCCCGGCGGTGTCTTCGGCTTCAG
CGGCCGATGTCCGACTCTAGTCCCGACGATGGCGACCAAGCGTTGTCAAC
CCTCGCGCGCAACCTGAGGATGGAAGCCATTACTGTGGCGCGGGCGGGTG
ACGCTGCCTCGGCGGAGAACCTGCTGAGAGGTGGCTTGAGAGAGTTGCAG
GCGGAAGGACGTATAGCTGCGGATGGCGGTGTTCGGCCGCGAGGGGAGGG
GGGGGTGCTTAAGGCGGAAGGCGAGGGGTTGGTGATAGCTGCGCTCGGGG
GTTTGATGGCTCAACAAGGAGCTCCTTCGAGCGGGAGACAGTCGGCAGGC
AGCCAAATACTTCCGCGAAGCCGTCTCCCGCGCCCGGCGGTGTCTTCGGC
TTCAGCGGCCGATGTCCGACTCTAGTCCCGACGATGGCGACCAAGCGTTG
TCAACCCTCGCGCGCAACCTGAGGATGGAAGCCATTACTGTGGCGCGGGC
GGGTGACGCTGCCTCGGCGGAGAACCTGCTGAGAGGTGGCTTGAGAGAGT
TGCAGGCGGAAGGACGTATAGCTGCGGATGGCGGTGTTCGGCCGCGAGGG
GAGGGGGGGGTGCTTAAGGCGGAAGGCGAGGGGTTGGTGATAGCTGCGCT
CGGGGGTTTGATGGCTCAACAAGGGAAACACCGCGAAGCTGTGGAGTCTC
TCAGAGCCGCTGCCTCCGTCCTTGAGGAGGGAATTGCCGCCGCCGACGAC
AAAAACGGCAACGGCAATGACGGTTCCGCTACTCCAGCTGCTACTAGTGG
TGCTACCAACACTAATAGTACCGGTATCGCCTCTACTAGTACAAGGATTT
CATCGCTGAAGAACGCTCTCGGCGGGGTTCTTTCTTCCCTTGGGACCTCG
CTGCTAGCTCTGGAAGAATCAGGGACGACAGCAGGGCTAGGCTCCGCTGT
CACCGCCGCCGTCCCTGCGGGAGGACAAACAGAGCCACATGGTAAGGACA
ACAACAGCAGCGATAACAAAAGCCACGACGCTGCCAGCGGTAGTACCGGT
AACGGTAACGGTAACGGGGAGGTATTGGATGATCATGTGGTGGACAGCGT
AGCGACGGGGGCAACGACGGCAGCAGCGGCGACGGCAGCGGCGACGGTGC
ACGAAGTTGAAGCTGTCGGTGAAACACCGCGAAGCTGTGGAGTCTCTCAG
AGCCGCTGCCTCCGTCCTTGAGGAGGGAATTGCCGCCGCCGACGACAAAA
ACGGCAACGGCAATGACGGTTCCGCTACTCCAGCTGCTACTAGTGGTGCT
ACCAACACTAATAGTACCGGTATCGCCTCTACTAGTACAAGGATTTCATC
GCTGAAGAACGCTCTCGGCGGGGTTCTTTCTTCCCTTGGGACCTCGCTGC
TAGCTCTGGAAGAATCAGGGACGACAGCAGGGCTAGGCTCCGCTGTCACC
GCCGCCGTCCCTGCGGGAGGACAAACAGAGCCACATGGTAAGGACAACAA
CAGCAGCGATAACAAAAGCCACGACGCTGCCAGCGGTAGTACCGGTAACG
GTAACGGTAACGGGGAGGTATTGGATGATCATGTGGTGGACAGCGTAGCG
ACGGGGGCAACGACGGCAGCAGCGGCGACGGCAGCGGCGACGGTGCACGA
AGTTGAAGCTGTCGGTCAGCAGCGGCAACAGCAGCGGCAGCAGCAGCAAT
CGGCCAAGATTCTTGACGCCTTGTCAGAGGCACATGCCCGTGCGGGACGA
TGGGAATTGGCCAGCAGCAGCGGCAACAGCAGCGGCAGCAGCAGCAATCG
GCCAAGATTCTTGACGCCTTGTCAGAGGCACATGCCCGTGCGGGACGATG
GGAATTGGCCAGGTCGTCTGCCGAACAGTCTCTGACGGCATGGCGAAGCC
TGGGAGATGCGGGCCGGACTGGCGCAGCAGCTAGTATGCTGTCGTTGGGT
CACCTTGTGCTGCAGCTGCATGGTGTTGGAGCCGGTCTCGAAGAGGCTGT
CGTCTGCCGAACAGTCTCTGACGGCATGGCGAAGCCTGGGAGATGCGGGC
CGGACTGGCGCAGCAGCTAGTATGCTGTCGTTGGGTCACCTTGTGCTGCA
GCTGCATGGTGTTGGAGCCGGTCTCGAAGAGGCT
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