mRNA_H-paniculata_contig18133.4397.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18133.4397.1
Unique NamemRNA_H-paniculata_contig18133.4397.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: G0S8T1_CHATD (Uncharacterized protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0S8T1_CHATD)

HSP 1 Score: 139 bits (350), Expect = 2.100e-31
Identity = 88/283 (31.10%), Postives = 132/283 (46.64%), Query Frame = 3
Query:  177 TECFCGDKKPVEMS--SKCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKF--FGTEFGNECFCGS-----SIRSSKESNQCTKPCAGRQGVACGGGDAITVFRRTGGDGGFVSGENDS-GYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSYE 995
            +EC+CG   P   +  S+CN PC+G+    CG    ++++  D           K   + PD                  G E   C+ D+  LRVL G+     NM+ E C+  CSG  +  FGTE GNECFCG+     S++ S+   +C   C G +   CGG   ++V++    +  FV    D   Y  C+ DD   R +T+   + DTMT  KC + C        +FGLE+G EC+C+  N+     ++P+  C ++C GD    CGG   L  Y+
Sbjct:   83 SECYCGSVAPTVPADPSECNMPCSGDPNEICGAGMRLTVYQFD-----------KAPVSYPD----------------VNGYEYQGCYTDNMSLRVLGGNTFGGANMTLESCAAFCSGYGYSIFGTENGNECFCGAFLDEDSVKVSEA--ECPMTCKGNENQKCGGPSRLSVYKLPNSNPPFVPAVVDEFRYESCWVDDVNDRALTSVDWRDDTMTIDKCAEHCK----DYLYFGLEYGRECYCA--NEISSGQAVPEKECAMLCPGDATLFCGGGSRLTLYK 330          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: A0A179H5L8_PURLI (Wsc domain-containing protein n=2 Tax=Purpureocillium lilacinum TaxID=33203 RepID=A0A179H5L8_PURLI)

HSP 1 Score: 139 bits (350), Expect = 1.300e-30
Identity = 85/284 (29.93%), Postives = 132/284 (46.48%), Query Frame = 3
Query:  180 ECFCGDKKPVEMSSK------CNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKESN---QCTKPCAGRQGVACGGGDAITVFRRTGGDGGFVSGE----NDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSY 992
            EC+CG+   ++ SSK      CN PC G+    CG    + L+   ++  TPTPT     ATL             +   +     L+ C+ + +  R L+   T +++M+ + C   C   K+FGTE+G+EC+CGS +  + ++     C  PCAG +   CGG   + ++      GG    +     D   +GC  +    R +      +D MT+ KC DFC A     KFFG E+G EC+C    D   K + PQ  C ++C G  ++ CG  + L  Y
Sbjct:  634 ECYCGNS--LDGSSKAAPLADCNMPCGGDASQYCGAGSRLELYSTTSAPVTPTPT-----ATL-------------IHKPTVSPYTLVGCWTEGNGKRALEQKATAANDMTNDACGTFCKDFKYFGTEYGSECYCGSYLDETSQTAPLADCAMPCAGDKYQYCGGSSRLELYMNPNATGGGPPEQPAAVGDFVLVGCQTEGNGTRALADAATAADDMTNAKCADFCKA----YKFFGTEYGRECYCGNKLDVSSKEA-PQKECGMLCGGSAQQFCGAANRLSVY 892          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: UPI002008E253 (uncharacterized protein n=1 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI002008E253)

HSP 1 Score: 135 bits (340), Expect = 2.310e-29
Identity = 84/283 (29.68%), Postives = 131/283 (46.29%), Query Frame = 3
Query:  180 ECFCGDKKPVEMSSK------CNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKESN---QCTKPCAGRQGVACGGGDAITVFRR---TGGDGGFVSGENDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSY 992
            EC+CG+   +E SSK      CN PC G+    CG    + L+   ++  TPTPT     ATL             +   +     L+ C+ + +  R L+   T + +M+ + C   C   K+FGTE+G+EC+CGS +  + ++     C  PC G +   CGG   + ++     TGG     +   D   +GC  +    R +      +D +T+ KC D+C A     K+FG E+G EC+C    D   K + PQ  C ++C G  ++ CGG   L  Y
Sbjct:  631 ECYCGNA--LEASSKAAPLADCNMPCGGDGSQYCGAGSRLELYSTTSAPVTPTPT-----ATL-------------IHKPTVSPYTLVGCWTEGNGKRALEQKATAAVDMTNDACGAYCKDYKYFGTEYGSECYCGSYLDGTSQTAPLADCNMPCGGDKYQYCGGSSRLELYMNPNATGGPPEQPAAVGDYVLVGCQTEGNGTRALGDASTAADDLTNAKCADYCKA----YKYFGTEYGRECYCGNKLDVSSKVA-PQKECGMLCGGSAQQYCGGSSRLSVY 888          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: A0A8H4Q4P0_9HYPO (WSC domain containing protein n=1 Tax=Ophiocordyceps camponoti-floridani TaxID=2030778 RepID=A0A8H4Q4P0_9HYPO)

HSP 1 Score: 134 bits (336), Expect = 7.010e-29
Identity = 87/285 (30.53%), Postives = 122/285 (42.81%), Query Frame = 3
Query:  180 ECFCGD-------KKPVEMSSKCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSA-EYCSEICSGSKFFGTEFGNECFCGSSIRSSKES---NQCTKPCAGRQGVACGGGDAITVFRRTGGDGGFVSGEN---DSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSY 992
            EC+CGD       K P+   S CN PC GN    CG  + + L+   ++  TPTPT     ATL                  A    L+ C  +    R L    T+    +A E C+  C GS++FGTE+G EC+CGS +          +C  PC G     CGG D + ++      GG         D   +GC  +    R ++     +D M++ KC  FC        FFG E+G EC+C    D   K  +P   C ++CAGD  + CG  + L  Y
Sbjct:  633 ECYCGDSVSPSSDKAPL---SDCNMPCGGNSSEYCGAGNRLELYSTTSAPTTPTPT-----ATLTHKA------------TVAASYTLVGCMAEPTSARALSHKTTLDGKATANEGCAAACGGSRYFGTEYGGECYCGSFVNGGTHPAPLTECNMPCGGDAYQYCGGSDRLELYENNNATGGTPRQPPTVADFTLVGCRTEGNGTRALSGRAAAADDMSNGKCAGFCGG----ATFFGTEYGRECYCGDGLDASSK-VVPAEECGMVCAGDARQLCGAANRLSVY 892          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: M7T1P2_EUTLA (Putative glyoxal oxidase protein n=1 Tax=Eutypa lata (strain UCR-EL1) TaxID=1287681 RepID=M7T1P2_EUTLA)

HSP 1 Score: 129 bits (325), Expect = 1.170e-28
Identity = 81/282 (28.72%), Postives = 127/282 (45.04%), Query Frame = 3
Query:  180 ECFCGDKKPVEMS----SKCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKESNQ-CTKPCAGRQGVACGGGDAITVFRRTGGDGGFVSGEN-----DSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRD-NDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSY 992
            EC+CG+    + S    S+C+ PC GN    CG  + + ++  +N   +P     +P A                      GA  + C+ D      L  +   +++M+   C++ C+G K+FGTE+G EC+CG +I ++K S+  C+ PCAG     CG G  +TV+ R          +N     D  Y GC RD   +R +T        MT + C D C+  G    +FG+E+G++CFC  D      +  +    C   C G+  + CG  D L  Y
Sbjct:   84 ECWCGNTLGSQSSQVSDSECSFPCAGNSAQKCGAGNRLDVY--ENGAYSP----RQPAAIT--------------------GAPYIGCYADSGAPHPLPSNIISTNDMTGAKCAQNCAGFKYFGTEYGQECYCGDTIPATKVSDSDCSIPCAGNNDELCGAGQRLTVYERA---------QNPPTVADFSYHGCHRDSTSQRSLTGPQANRPDMTLETCADLCTQYG----WFGVEYGSQCFCGTDLAASAAEPELSDSECDAPCGGNNRELCGAADRLSVY 326          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: A0A8H6U5W7_9PEZI (Copper radical oxidase n=3 Tax=Colletotrichum orchidearum species complex TaxID=2707337 RepID=A0A8H6U5W7_9PEZI)

HSP 1 Score: 127 bits (320), Expect = 6.810e-28
Identity = 80/279 (28.67%), Postives = 126/279 (45.16%), Query Frame = 3
Query:  177 TECFCGDKKPVEM---SSKCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKES---NQCTKPCAGRQGVACGGGDAITVFRRTGGDGGFVSGENDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSYE 995
            +EC+C +     +    SKC+  C+G+ +  CG  D ++++                          P L + V+       A+   C +DD   RVL+ S+T S++M+A+ CS+ C    FFG EFG EC+CG  +    +    ++C  PC G     CG    + +++ T       S +N S +  C  D+  +R++         MT +KC+DFCSA     ++FGLEFG ECFC    ++          C+  C GD    CG  D L  Y+
Sbjct:  205 SECWCSNIIVDGIWADDSKCSKLCSGDSKYFCGDGDQLTVY-------------------------GPALAQAVVPQ-----AQYQYCVKDDQVHRVLEASRTASEDMTAQKCSDFCVDYTFFGVEFGKECYCGDVLPGGTQQVDDSECATPCFGDGKFTCGAPGRMNLYKSTKPVKILPSVDNYS-FTHCVVDNPTQRVLDEARTSGSDMTAQKCKDFCSARS--FRYFGLEFGEECFCG---NYYTAQDAADEECNKKCGGDRSHLCGAADRLAVYD 447          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: A0A0B2WKE3_METAS (WSC domain containing protein n=10 Tax=Opisthokonta TaxID=33154 RepID=A0A0B2WKE3_METAS)

HSP 1 Score: 129 bits (324), Expect = 2.150e-27
Identity = 81/284 (28.52%), Postives = 135/284 (47.54%), Query Frame = 3
Query:  180 ECFCG---DKKPVEMS-SKCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKES---NQCTKPCAGRQGVACGGGDAITVFRR---TGGDGGFVSGENDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSI--PQHHCHVICAGDEEKTCGGRDALDSYE 995
            EC+CG   DK     +  +CN  C G+  + CG  + + L+   ++  TPTPT     ATL  S    + P  ++G           C+ + + +R L+ + T+SD M+ E C+  C   K+FGTE+G+EC+CGS +  S ++     C  PC+G     CG    + +++    T G+    +   D  ++GC  +    R +    +  D MT++ C  FC        +FG E+G EC+C    + +  +SI  P   C ++C G   + CG  + L  Y+
Sbjct:  626 ECYCGNALDKSSAAAAIGECNMACGGDPGVYCGAGNRLELYSTTSAPVTPTPT-----ATL--SHKPTVAPYTMVG-----------CWSEGNGVRALNQAATISDKMTNEACATFCKAYKYFGTEYGSECYCGSFLAESSKTVPIGDCNMPCSGNAYEYCGASSRLELYQNPNITTGNPEQPAAIGDYVFVGCQSEGNNTRALPGSTVSQDNMTNEVCATFCK----DFTYFGTEYGRECYCG---NALAASSIVAPASECRMLCGGSNTEYCGASNRLSVYK 884          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: UPI001D0446E9 (WSC domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D0446E9)

HSP 1 Score: 129 bits (324), Expect = 2.470e-27
Identity = 82/280 (29.29%), Postives = 132/280 (47.14%), Query Frame = 3
Query:  180 ECFCGDK-KPVEMSS---KCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKESN--QCTKPCAGRQGVACGGGDAITVFRR---TGGDGGFVSGENDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSY 992
            EC+CG+   P   ++   +CN PC GN    CG  + + L+   ++  TPTPT     ATL             +   +     L+ C+ +   +R L+   T+   M+ + C   C   K+FGTE+G+EC+CGS +    ++   +C  PCAG     CG  + + ++     TGG     +   D   +GC  +    R +       + MT+ KC +FC  +GS  K+FG E+G+EC+C    D   K + PQ  C ++C G+  + CG  + L  Y
Sbjct:  754 ECYCGNSLSPSSQTAPLAECNMPCGGNASDYCGAGNRLELYSTTSAPVTPTPT-----ATL-------------IHKPTVAPYTLVGCWAEGQGVRALEQKATIDKAMTNDACGTFCKDYKYFGTEYGSECYCGSYVGGGTQAPLAECNMPCAGDAYQYCGASNRLELYMNANATGGQPEQPAAVGDYVLVGCRTEGNGTRALAGKATAVEGMTNAKCGEFC--KGS--KYFGTEYGHECYCGDALDVSSKEA-PQKECGMLCGGNPLEFCGASNRLSVY 1010          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: A0A4Q7JMT5_METCM (Uncharacterized protein n=2 Tax=Metacordyceps chlamydosporia TaxID=280754 RepID=A0A4Q7JMT5_METCM)

HSP 1 Score: 129 bits (323), Expect = 2.900e-27
Identity = 80/282 (28.37%), Postives = 129/282 (45.74%), Query Frame = 3
Query:  180 ECFCGDKKPVEMSSK----CNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKESN---QCTKPCAGRQGVACGGGDAITVFRR---TGGDGGFVSGENDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSIPQHHCHVICAGDEEKTCGGRDALDSYE 995
            EC+CG+      S+     CN  C G     CG  + + L+   ++  TPTPT     ATL             +   +     L+ C+ + + +R LD   TVSD M+ E C+  C   K+FGTE+G+EC+CGS +  S ++     C  PC+G Q   CG G  + +++    T G+    +   +   +GC  +    R +    +  D MT++ C ++C       ++FG E+G EC+C    D       P   C ++CAG   + CG  + L  Y+
Sbjct:  645 ECYCGNSLDKTSSAAALADCNMACGGEPSEYCGAGNRLELYSTTSAPVTPTPT-----ATL-------------IHKPTVSPYTLVGCWTEGNGVRALDQGSTVSDKMTNEACATYCKSFKYFGTEYGSECYCGSYLAESSKTAPLADCNMPCSGDQYQYCGAGGRLELYQNPNITTGNPEQPASVGNYVLVGCQTEGNNTRALGGSTLAQDDMTNEVCANWCK----DFEYFGTEYGRECYCGNTLD-ASSLVAPASECRMLCAGSPTEYCGAGNRLSVYK 903          
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Match: A0A0M8N2J6_9HYPO (Putative fungistatic metabolite n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8N2J6_9HYPO)

HSP 1 Score: 128 bits (321), Expect = 5.650e-27
Identity = 88/283 (31.10%), Postives = 133/283 (47.00%), Query Frame = 3
Query:  180 ECFCGD---KKPVEMS-SKCNTPCTGNDRISCGGKDAMSLFMMDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDDHDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKESN---QCTKPCAGRQGVACGGGDAITVFRR---TGGDGGFVSGENDSGYLGCFRDDGEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDNDFMEKNSI--PQHHCHVICAGDEEKTCGGRDALDSY 992
            EC+CG+   K   E   + CN PC G+    CG  + + L+       T    P  PT TL    P P +   VL          + C+ +   +R L  +   S +M+ E C+  C+G KFFGTEFGNEC+CG    +S E+     C   CAG Q   CGG D + ++     TGG     +   D  + GC  +    R ++     + +MT++ C  FC+       FFG EFG EC+C    D ++ +S+  P   C ++C G++++ CG  + L  Y
Sbjct:  656 ECYCGNTLAKSSGEAPIADCNIPCGGDATEFCGAGNRLELYS------TTATQPPAPTGTL---APVPTISPYVL----------VGCWTEGDGVRALGQAFFTSPDMTNEQCAASCAGFKFFGTEFGNECYCGDFTAASSEAAPDADCGATCAGNQFEFCGGSDRLELYMNPDATGGSPSQPAAVGDFVFAGCQTEGNGTRALSGATTFNTSMTNELCGAFCA----DFDFFGTEFGAECYCG---DALDPSSMAAPAADCQMLCGGNDQEFCGAGNRLSVY 912          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18133.4397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G0S8T1_CHATD2.100e-3131.10Uncharacterized protein n=1 Tax=Chaetomium thermop... [more]
A0A179H5L8_PURLI1.300e-3029.93Wsc domain-containing protein n=2 Tax=Purpureocill... [more]
UPI002008E2532.310e-2929.68uncharacterized protein n=1 Tax=Purpureocillium ta... [more]
A0A8H4Q4P0_9HYPO7.010e-2930.53WSC domain containing protein n=1 Tax=Ophiocordyce... [more]
M7T1P2_EUTLA1.170e-2828.72Putative glyoxal oxidase protein n=1 Tax=Eutypa la... [more]
A0A8H6U5W7_9PEZI6.810e-2828.67Copper radical oxidase n=3 Tax=Colletotrichum orch... [more]
A0A0B2WKE3_METAS2.150e-2728.52WSC domain containing protein n=10 Tax=Opisthokont... [more]
UPI001D0446E92.470e-2729.29WSC domain-containing protein n=1 Tax=Hirsutella r... [more]
A0A4Q7JMT5_METCM2.900e-2728.37Uncharacterized protein n=2 Tax=Metacordyceps chla... [more]
A0A0M8N2J6_9HYPO5.650e-2731.10Putative fungistatic metabolite n=1 Tax=Escovopsis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18133contigH-paniculata_contig18133:1048..4207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score144.8
Seed ortholog evalue6.2e-32
Seed eggNOG ortholog5145.XP_001903352.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Podospora anserina S mat genomic DNA chromosome
EggNOG OGs21QNZ@147550,39X52@33154,3P073@4751,3RK45@4890,3UBG9@5139,KOG4157@1,KOG4157@2759
COG Functional cat.GO
Best tax levelSordariales
Best eggNOG OGNA|NA|NA
Exons5
Model size1940
Cds size867
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.0158484-UTR-H-paniculata_contig18133:1047..11901622929411.0158484-UTR-H-paniculata_contig18133:1047..1190Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18133 1048..1190 +
1691480849.5443652-UTR-H-paniculata_contig18133:1047..11901691480849.5443652-UTR-H-paniculata_contig18133:1047..1190Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18133 1048..1190 +
1622929411.0995395-UTR-H-paniculata_contig18133:3277..42071622929411.0995395-UTR-H-paniculata_contig18133:3277..4207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18133 3278..4207 +
1691480849.608417-UTR-H-paniculata_contig18133:3277..42071691480849.608417-UTR-H-paniculata_contig18133:3277..4207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18133 3278..4207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.031951-CDS-H-paniculata_contig18133:1190..15471622929411.031951-CDS-H-paniculata_contig18133:1190..1547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 1191..1547 +
1691480849.5541632-CDS-H-paniculata_contig18133:1190..15471691480849.5541632-CDS-H-paniculata_contig18133:1190..1547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 1191..1547 +
1622929411.048632-CDS-H-paniculata_contig18133:2053..21081622929411.048632-CDS-H-paniculata_contig18133:2053..2108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 2054..2108 +
1691480849.5626056-CDS-H-paniculata_contig18133:2053..21081691480849.5626056-CDS-H-paniculata_contig18133:2053..2108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 2054..2108 +
1622929411.0636144-CDS-H-paniculata_contig18133:2482..27271622929411.0636144-CDS-H-paniculata_contig18133:2482..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 2483..2727 +
1691480849.5725791-CDS-H-paniculata_contig18133:2482..27271691480849.5725791-CDS-H-paniculata_contig18133:2482..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 2483..2727 +
1622929411.0774765-CDS-H-paniculata_contig18133:2909..29771622929411.0774765-CDS-H-paniculata_contig18133:2909..2977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 2910..2977 +
1691480849.5895727-CDS-H-paniculata_contig18133:2909..29771691480849.5895727-CDS-H-paniculata_contig18133:2909..2977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 2910..2977 +
1622929411.088489-CDS-H-paniculata_contig18133:3135..32771622929411.088489-CDS-H-paniculata_contig18133:3135..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 3136..3277 +
1691480849.5990434-CDS-H-paniculata_contig18133:3135..32771691480849.5990434-CDS-H-paniculata_contig18133:3135..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18133 3136..3277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18133.4397.1prot_H-paniculata_contig18133.4397.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18133 1191..3277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18133.4397.1

>prot_H-paniculata_contig18133.4397.1 ID=prot_H-paniculata_contig18133.4397.1|Name=mRNA_H-paniculata_contig18133.4397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
MPNRSRIPRCFTECFCGDKKPVEMSSKCNTPCTGNDRISCGGKDAMSLFM
MDNSCPTPTPTPEKPTATLPDSGPNPMLPRDVLGDDSARGAELLACFEDD
HDLRVLDGSKTVSDNMSAEYCSEICSGSKFFGTEFGNECFCGSSIRSSKE
SNQCTKPCAGRQGVACGGGDAITVFRRTGGDGGFVSGENDSGYLGCFRDD
GEKRIMTTGMMKSDTMTHKKCRDFCSAEGSHVKFFGLEFGNECFCSRDND
FMEKNSIPQHHCHVICAGDEEKTCGGRDALDSYELLLS*
back to top

mRNA from alignment at H-paniculata_contig18133:1048..4207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18133.4397.1 ID=mRNA_H-paniculata_contig18133.4397.1|Name=mRNA_H-paniculata_contig18133.4397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3160bp|location=Sequence derived from alignment at H-paniculata_contig18133:1048..4207+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTACGCTGAAGTTTCACATCGACAAATGCTTGAAGTCTAATCTTGTCGG CAGGATGGGAATCTTATCTCGTCGACCCAAAAGGAGCACGAACCTGTTCC TTCCTTCCGGTAACACACACCAACAGTGGACCTCCATTTCAGCATGCCAA ATCGTTCCCGCATACCTCGGTGTTTCACAGAGTGCTTCTGTGGTGACAAA AAACCCGTGGAGATGAGTTCGAAATGCAACACGCCGTGCACCGGGAATGA CCGCATATCATGTGGCGGTAAAGACGCCATGAGCTTGTTCATGATGGATA ATTCCTGCCCGACCCCGACTCCTACACCGGAAAAGCCAACCGCGACGCTG CCGGATTCCGGACCGAATCCCATGCTACCGCGCGATGTGTTGGGCGATGA CTCTGCGCGCGGTGCAGAGTTGTTGGCCTGCTTCGAAGACGATCATGATC TTCGGGTTCTTGACGGTTCCAAGACTGTCAGTGATAACATGAGTGCAGAG GTGAGACAGAAATAGGAATGTCTGAGAGCCGTTAGAACCAAAAGAGAAGA GGCGGGCAATTAAAGTGCCTAGTTCGACGAGCGAGCCCCCTTCAAGCACA GGAACGCCAGCTGCCCCACAATAAGATGAGCGTGCACGTATCAAATTGAT GTTGGTGCTGAGAAATGTCTGCCACCGGACCGAAATAGGTCAAGTTGGGT CGCGTCGGGCCCGACTACTTCTTATAGCCTTTGAAGGGGCTTCAAATAGC TCTGCCCTTCGGTGGAGATGACAACTCGTTGTAGATGGTTCGATGATATG CGAAAGTAACGAATGGGCCTAGTTCTTTTAAATCCCCCGTCATCAATGTC GTGGTGCCTCCGTCCGTCTTTAGTTGAAATGACGCGGAGAAACGACTTAC TCGAGATGCGGAGAAACGTCAGACTCGAGAGATTGTCTGTCCGTCCTGCA ATTTTCATCCTGATCTCGACATATTTCGACCCACTTGCAACGCTCGCAAC CTACAGTACTGCTCGGAGATCTGCTCAGGCTCGAAATTCTTTGGGACAGA ATTTGGAAACGGTGAGAATACTGTCGAAAGATTTGGTCACAGCGAAAGAT CATTGAGGTATTGGGAGCATGTTGATGCGGCATGACTACTCTTGAACCTG GGGGAACATGGAGTACTCCAGTGTCGGACAAATTACTGTTGGCAAAATGA GGGAGTTGGGGCATTGTCATCGAAAAAGCAGTAGCATGGTACCCGAGCAG GACGCATTGCTTCTTACGCTCTAGGCTCTTTCCACAGTTGCCACTAATCA CCGTTCCGTCCTGGGATCGGGGTAACCTGTCTCACTCAATCTATAATAAC TCTCGAACAATGATCCAGTCGAAAATAGTGTTTCCGCTACGCACTCCCGT CATCATAATTCTCCGTTTCTTCTGGCATCGCTCAGAGTGTTTTTGCGGTA GTTCCATCCGGTCGTCGAAGGAATCGAACCAGTGCACCAAGCCATGTGCG GGTCGACAGGGAGTAGCATGCGGAGGCGGCGACGCGATCACTGTGTTCAG GAGAACTGGTGGTGATGGTGGTTTCGTTAGCGGAGAGAACGACAGTGGAT ATCTAGGTTGCTTCAGAGATGATGGAGAGAAGCGCATCATGACCACGGGA ATGATGAAAAGTGACACGATGACCCACAAGGTGAAGGATCAAACCTTCGA TACATCATGAATGCTACGTCAGAAGCGATTTGTGGGTAAAGATGATAAAG TAAACTCTATTGCTTGTTCAATGAAATATTGACACACAAACCTTTCGTAC TTACATGACATTTCCCCATGATTCTCACCTTCGCGTCATCATTTTGAAAT TGTCCGCGGCAGAAATGTCGTGACTTCTGCTCCGCGGAAGGCAGCCACGT GAAGTTCTTCGGGCTCGAGTTCGGCAATGAGTAAGTCATTATTCTAATGC GTAGTTCGCAGTGTATATTAATCGACGACCAGATTCTGCTTCTAGCATAG GTCTTCGCGGAAACGTGCAAGGGTGGACGCGTCTTGGAATTACTGAGCTC GAAAATGATTATGACTACTCCCCCCCCCTTGTGCCCAGGTGTTTCTGTTC GAGAGACAATGACTTCATGGAAAAGAACTCTATTCCCCAGCACCATTGCC ACGTGATATGCGCTGGTGACGAAGAGAAGACGTGTGGTGGAAGGGACGCA CTGGACTCCTACGAGCTGTTGTTGTCTTGAGTACCGCATAAATATAAGCT AGTATCACCTCTTTCGTGGAAGAGTTTGTTTACGCACGTTTTGTTAACGA GTGCAGCGTCAACTCAAATGAGTCGTGCAACGTCTCTCTGTATAAGCCTC AGCTCTATCAAGGATTATATCGGGGGATGAAATCACAAACTATGGCCGCC GACCAAAGTAAACAGCTCTGCAGCTGTGTTCAGCGGTTTAGTTGGCGAGG CAATACATTTGAGCACACCCTGCATCTATATTTGTTTCGTGTACTGATGT AGCCGTGTTTTTTGGTTTGTAAGCCCTAGTGTTGGTAAGGTGTTTCGAGC TTGGAACTTGTATTAGCTGTTTTTGAGTGAGATTTAAAAAAAAATGAAGA AACGTTGGCCCGTTTCGTTTGTCTTGAGAGTTATTGACTTAAAGGTTGTA CGTGAGAAAATATTTCACCGTGTTCGGATACGGCTGCAACGGGATACCTA AATGAGGATTGTAATGTTGTCCTTGACACAGTTGTAATCTGTATAAGCTC ATGTGTTCGAAGATTGATGCAGGAAAGGCAGTGTAGAGATGCTATCGTTT CACGATCGAGAAAGGTCCAACAGAGATGGTTGATTGTGAAGTAGATGGGC TAGAAATGGTTTCGGCGAGATGTGCAGAAAGGGGAAACACGGTAGCTTGT GATGCATTATTTACTGTTTGGATGGTCGAATGTGCAGGATAAAGTTTAAA GTTGACTTTCATGTGTGGAAGAGAAAAACGTCGGCTTAAGAATAATGAAT TGTTCTGTATACAAGTGGGGACTGCGAACCATGTAAAAACTGCCTCTTTT CACAAATTATGGTGAGAAATTATTTTCTAATTCGAATAGGATGAAGAATG AAGTGTAAACTGTCAAGTTTTCATCCGAACATATATTATGAACGAAATAT GCAAAAAGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18133:1048..4207+

>mRNA_H-paniculata_contig18133.4397.1 ID=mRNA_H-paniculata_contig18133.4397.1|Name=mRNA_H-paniculata_contig18133.4397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig18133:1048..4207+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAATCGTTCCCGCATACCTCGGTGTTTCACAGAGTGCTTCTGTGG
TGACAAAAAACCCGTGGAGATGAGTTCGAAATGCAACACGCCGTGCACCG
GGAATGACCGCATATCATGTGGCGGTAAAGACGCCATGAGCTTGTTCATG
ATGGATAATTCCTGCCCGACCCCGACTCCTACACCGGAAAAGCCAACCGC
GACGCTGCCGGATTCCGGACCGAATCCCATGCTACCGCGCGATGTGTTGG
GCGATGACTCTGCGCGCGGTGCAGAGTTGTTGGCCTGCTTCGAAGACGAT
CATGATCTTCGGGTTCTTGACGGTTCCAAGACTGTCAGTGATAACATGAG
TGCAGAGATGCCAAATCGTTCCCGCATACCTCGGTGTTTCACAGAGTGCT
TCTGTGGTGACAAAAAACCCGTGGAGATGAGTTCGAAATGCAACACGCCG
TGCACCGGGAATGACCGCATATCATGTGGCGGTAAAGACGCCATGAGCTT
GTTCATGATGGATAATTCCTGCCCGACCCCGACTCCTACACCGGAAAAGC
CAACCGCGACGCTGCCGGATTCCGGACCGAATCCCATGCTACCGCGCGAT
GTGTTGGGCGATGACTCTGCGCGCGGTGCAGAGTTGTTGGCCTGCTTCGA
AGACGATCATGATCTTCGGGTTCTTGACGGTTCCAAGACTGTCAGTGATA
ACATGAGTGCAGAGTACTGCTCGGAGATCTGCTCAGGCTCGAAATTCTTT
GGGACAGAATTTGGAAACGTACTGCTCGGAGATCTGCTCAGGCTCGAAAT
TCTTTGGGACAGAATTTGGAAACGAGTGTTTTTGCGGTAGTTCCATCCGG
TCGTCGAAGGAATCGAACCAGTGCACCAAGCCATGTGCGGGTCGACAGGG
AGTAGCATGCGGAGGCGGCGACGCGATCACTGTGTTCAGGAGAACTGGTG
GTGATGGTGGTTTCGTTAGCGGAGAGAACGACAGTGGATATCTAGGTTGC
TTCAGAGATGATGGAGAGAAGCGCATCATGACCACGGGAATGATGAAAAG
TGACACGATGACCCACAAGAGTGTTTTTGCGGTAGTTCCATCCGGTCGTC
GAAGGAATCGAACCAGTGCACCAAGCCATGTGCGGGTCGACAGGGAGTAG
CATGCGGAGGCGGCGACGCGATCACTGTGTTCAGGAGAACTGGTGGTGAT
GGTGGTTTCGTTAGCGGAGAGAACGACAGTGGATATCTAGGTTGCTTCAG
AGATGATGGAGAGAAGCGCATCATGACCACGGGAATGATGAAAAGTGACA
CGATGACCCACAAGAAATGTCGTGACTTCTGCTCCGCGGAAGGCAGCCAC
GTGAAGTTCTTCGGGCTCGAGTTCGGCAATGAAAATGTCGTGACTTCTGC
TCCGCGGAAGGCAGCCACGTGAAGTTCTTCGGGCTCGAGTTCGGCAATGA
GTGTTTCTGTTCGAGAGACAATGACTTCATGGAAAAGAACTCTATTCCCC
AGCACCATTGCCACGTGATATGCGCTGGTGACGAAGAGAAGACGTGTGGT
GGAAGGGACGCACTGGACTCCTACGAGCTGTTGTTGTCTTGAGTGTTTCT
GTTCGAGAGACAATGACTTCATGGAAAAGAACTCTATTCCCCAGCACCAT
TGCCACGTGATATGCGCTGGTGACGAAGAGAAGACGTGTGGTGGAAGGGA
CGCACTGGACTCCTACGAGCTGTTGTTGTCTTGA
back to top