mRNA_H-paniculata_contig1812.4390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1812.4390.1
Unique NamemRNA_H-paniculata_contig1812.4390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1812.4390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1812contigH-paniculata_contig1812:21527..22289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size744
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1812.4390.1prot_H-paniculata_contig1812.4390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1812 21527..21934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.0915954-CDS-H-paniculata_contig1812:21526..219341622929410.0915954-CDS-H-paniculata_contig1812:21526..21934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 21527..21934 -
1691480849.2538512-CDS-H-paniculata_contig1812:21526..219341691480849.2538512-CDS-H-paniculata_contig1812:21526..21934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 21527..21934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.108243-UTR-H-paniculata_contig1812:21934..220371622929410.108243-UTR-H-paniculata_contig1812:21934..22037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 21935..22037 -
1691480849.2714617-UTR-H-paniculata_contig1812:21934..220371691480849.2714617-UTR-H-paniculata_contig1812:21934..22037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 21935..22037 -
1622929410.1230369-UTR-H-paniculata_contig1812:22056..222891622929410.1230369-UTR-H-paniculata_contig1812:22056..22289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 22057..22289 -
1691480849.2816613-UTR-H-paniculata_contig1812:22056..222891691480849.2816613-UTR-H-paniculata_contig1812:22056..22289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 22057..22289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1812.4390.1

>prot_H-paniculata_contig1812.4390.1 ID=prot_H-paniculata_contig1812.4390.1|Name=mRNA_H-paniculata_contig1812.4390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MHRISIAIGGNVPYPSQNKILYVQLLIPILRMSRDNLPTSIKSSTLQHLS
CTSTGSHFSIRPRISTKNVGTYPFHPCARRQHIARRGHGTPAFWPQKLFD
NLRDLGLEYHSKNTISDIRRKSMSQAAAQQWHSAPT
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mRNA from alignment at H-paniculata_contig1812:21527..22289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1812.4390.1 ID=mRNA_H-paniculata_contig1812.4390.1|Name=mRNA_H-paniculata_contig1812.4390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=763bp|location=Sequence derived from alignment at H-paniculata_contig1812:21527..22289- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTACTTGCATCACAGACCTATAGTATGTACATCAACATATGTAAATG
GCAATTTCCTGGTATGTATTTGTGGGCCAGGGGGGAACTCCCGCAAAGTA
GCTGCTTTTGCGGATCACACTTGCTATATGTGCTATTGTCTGACACCTCA
CCCCAGTGCCAGTTGGTCGCTGCCACACTCGGCACAACAACGAGGGAAAG
TGCAAACCATTTTTAAGGGGGTGTTCTGGCAAGGTACCTGGCTTTTTCGC
AGGCTCAACTTCGCATTCGAATTCTTCGAAAATGGTGCTCGTGCACGTAG
TAGTCAGCGGCGAATCTGTCCCACAAGTTGCGAGAGAGACCGCTGCGGAT
ATATCATGCACCGCATCTCAATTGCGATAGGCGGAAATGTACCCTATCCC
AGTCAAAACAAAATATTGTACGTTCAGCTATTGATACCGATACTCCGTAT
GTCGCGGGACAATTTACCCACAAGCATTAAATCCTCCACTCTGCAGCATT
TATCATGTACCAGTACGGGCAGTCACTTTTCGATCCGCCCACGGATCTCC
ACGAAAAATGTGGGGACATATCCGTTTCACCCTTGTGCTCGGCGACAGCA
CATTGCCCGCCGAGGACATGGTACTCCCGCATTTTGGCCCCAAAAGCTGT
TCGACAATTTGAGAGACCTTGGACTGGAATATCATAGTAAAAATACCATT
TCCGACATTCGCCGGAAATCCATGAGTCAAGCGGCTGCTCAACAGTGGCA
CAGTGCCCCAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1812:21527..22289-

>mRNA_H-paniculata_contig1812.4390.1 ID=mRNA_H-paniculata_contig1812.4390.1|Name=mRNA_H-paniculata_contig1812.4390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig1812:21527..22289- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCGCATCTCAATTGCGATAGGCGGAAATGTACCCTATCCCAGTCA
AAACAAAATATTGTACGTTCAGCTATTGATACCGATACTCCGTATGTCGC
GGGACAATTTACCCACAAGCATTAAATCCTCCACTCTGCAGCATTTATCA
TGTACCAGTACGGGCAGTCACTTTTCGATCCGCCCACGGATCTCCACGAA
AAATGTGGGGACATATCCGTTTCACCCTTGTGCTCGGCGACAGCACATTG
CCCGCCGAGGACATGGTACTCCCGCATTTTGGCCCCAAAAGCTGTTCGAC
AATTTGAGAGACCTTGGACTGGAATATCATAGTAAAAATACCATTTCCGA
CATTCGCCGGAAATCCATGAGTCAAGCGGCTGCTCAACAGTGGCACAGTG
CCCCAACAATGCACCGCATCTCAATTGCGATAGGCGGAAATGTACCCTAT
CCCAGTCAAAACAAAATATTGTACGTTCAGCTATTGATACCGATACTCCG
TATGTCGCGGGACAATTTACCCACAAGCATTAAATCCTCCACTCTGCAGC
ATTTATCATGTACCAGTACGGGCAGTCACTTTTCGATCCGCCCACGGATC
TCCACGAAAAATGTGGGGACATATCCGTTTCACCCTTGTGCTCGGCGACA
GCACATTGCCCGCCGAGGACATGGTACTCCCGCATTTTGGCCCCAAAAGC
TGTTCGACAATTTGAGAGACCTTGGACTGGAATATCATAGTAAAAATACC
ATTTCCGACATTCGCCGGAAATCCATGAGTCAAGCGGCTGCTCAACAGTG
GCACAGTGCCCCAACA
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