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Homology
BLAST of mRNA_H-paniculata_contig18091.4373.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 5.050e-18 Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 1 AMLGRVRGETHSEKKAIEAAANAQGVNPVDRYMEASRPIVHPTAKDMELPQIEQALSLAGAGKERILLATADH----------LYSLALAW 243
AMLGR +G+ HS +A EAAAN +GV PV +YMEASRP+ HPT ++M LPQIEQAL+LA +ER L+++ L L LAW
Sbjct: 2411 AMLGRAKGDGHSSTQAAEAAANREGVTPVQKYMEASRPLGHPTVEEMSLPQIEQALALAEMARERCSLSSSSGGKSGVTTNPGLLPLTLAW 2501
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 87.4 |
| Seed ortholog evalue | 3.2e-15 |
| Seed eggNOG ortholog | 2880.D7G359 |
| Preferred name | CFAP46 |
| KEGG ko | ko:K18626 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038 |
| EggNOG free text desc. | cilium movement involved in cell motility |
| EggNOG OGs | 2C6EK@1,2QS2Z@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04812 |
| Exons | 3 |
| Model size | 244 |
| Cds size | 240 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18091.4373.1 >prot_H-paniculata_contig18091.4373.1 ID=prot_H-paniculata_contig18091.4373.1|Name=mRNA_H-paniculata_contig18091.4373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MLGRVRGETHSEKKAIEAAANAQGVNPVDRYMEASRPIVHPTAKDMELPQ
IEQALSLAGAGKERILLATADHLYSLALAW back to topmRNA from alignment at H-paniculata_contig18091:2885..4648- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig18091.4373.1 ID=mRNA_H-paniculata_contig18091.4373.1|Name=mRNA_H-paniculata_contig18091.4373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig18091:2885..4648- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATGCTGGGTAGGGTTAGGGGTGAAACCCACAGCGAGAAAAAGGCCAT
AGAGGCAGCGGCGAACGCCCAGGGTGTCAACCCGGTGGACAGGTAACACA
AAAGATTGGTTGACCCCATAGCATTGATGTGACAGTCGAAACTGCCTACC
TCCCCTGCTGCTCGAGCTGCAACATATTCATGTGTCAATTGGTTGAAGTA
CTGACGTTAATAAGCTGAAAAATTATACCCTACCCACCGTAATAAATGTC
ACGAAATTACACCAACTAAGCGGCGTCAGATCCCTCAAATACTACCGAAC
CTGCGAGTCCGACACACAAGGATAGTAAAGCGATCAGCGTATTTGTTAGC
AGGCGAACTATGTTGTCGCTTACATGTTTGAACACTACGCCTGTCCTCGA
AAAACGCTGACAAAGTACAAACAACATTCGAATCCATTGTGACCTCTCGT
GCATCCGGTGAACCTCCCCGCGCAAAGGTACATGGAAGCTTCCCGGCCAA
TAGTACATCCTACGGCAAAGGATATGGAGTTGCCTCAAATCGAGCAGGTG
AGAGCCCTTGCGAGGGGTTCACCCGACGAAGCCTTCGGTAGGGAGGAGGG
ATTGGTGTCATGGTGTCATGGTGTCACTGCCATGCGAAACGAAATGTCTT
CTTAGAGATACCGGGTAATATTGGCTCCACATCCTGTGAAGCCCTTGTGA
CTGCTTTCGTTTCAACCCCGAGTTATCTTTGCCGCCGCCGCTCAGTGATA
GTGAGCACCGTGAGAATAGTTATGCATGATGTTTGCTATGGAAATGATAC
TGCACATATAAACCGCCTGCCAATGGTGGATTTCGTCGTATTACATATAT
TGAATCAAGCCTTCACAACGCCTAAACGATTTCCAGCTGACTTGTGCAGC
GTTGCGAGCGAACTTCGCAGTAGAGGTGTTTTCAGTCTTAGGGTCATTGT
CCAAATCTTCGACACATCGCGCATTCTTTGCCTATTTTGCTATAACCTGT
TGTGTTGTAAGGCGTAGCTTTGCATTTTTATTGGACCTTTTTGTTGGGTC
CTTGTTGAGGTCGTCAACAATTCACGTTTTGATCACTCGTTGGTGGCACT
GTTATTGATGGCTGGCAAGAGTTAAAAAGCATGCAGTAATCAGTATATTT
AACTATGTCGTATGCTGCATAGAACATTGGAGTGAGGTGCATTGTGGTAA
AGCTCCTGCAGGTTTTGGGTTATCCGGTTCAATATTGATAGCTGCGGACC
TCTCGCCTGGCAGTACCACACAATGGATACACGTCACGTTGTGTGTGTTG
GTGAGCAAATATAGTTTCCAAAATACGTAAATTCCGAGTACATCTATAAA
GGAAATGTACTAAAAGCACGTAAAGAGCATGCGGCGAGTGCAATGTTTGA
ATGATAACGGCTGAAATCCCTATTGCGGAGTTAGCTTTGAGTATTGCGCG
AGCCAGACGCTCACCTCTGCCGCAATATCTAAGTTATAATTGATGGTATC
CTAGTCAGCGCTCCTTTGTCATACCCCTCTCTTCCGGAAATCTCTAAATA
TCCAGTGGAGCTAAGTGCGCTCTCACCATATTTGACCAACAAGCGACTGT
CGGTGTGGATCCCATCGCTTATATGAGGACTAGCTCTACCGATTTATTCT
CCCCGACGGTGTTTGGTGTGATGCTCGATCTAGGCGTTGTCGCTAGCAGG
GGCAGGCAAGGAAAGGATCCTACTAGCAACCGCAGATCATTTGTACTCGC
TGGCTCTAGCATGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig18091:2885..4648- >mRNA_H-paniculata_contig18091.4373.1 ID=mRNA_H-paniculata_contig18091.4373.1|Name=mRNA_H-paniculata_contig18091.4373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig18091:2885..4648- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGGTAGGGTTAGGGGTGAAACCCACAGCGAGAAAAAGGCCATAGA
GGCAGCGGCGAACGCCCAGGGTGTCAACCCGGTGGACAGATGCTGGGTAG
GGTTAGGGGTGAAACCCACAGCGAGAAAAAGGCCATAGAGGCAGCGGCGA
ACGCCCAGGGTGTCAACCCGGTGGACAGGTACATGGAAGCTTCCCGGCCA
ATAGTACATCCTACGGCAAAGGATATGGAGTTGCCTCAAATCGAGCAGGT
ACATGGAAGCTTCCCGGCCAATAGTACATCCTACGGCAAAGGATATGGAG
TTGCCTCAAATCGAGCAGGCGTTGTCGCTAGCAGGGGCAGGCAAGGAAAG
GATCCTACTAGCAACCGCAGATCATTTGTACTCGCTGGCTCTAGCATGGG
CGTTGTCGCTAGCAGGGGCAGGCAAGGAAAGGATCCTACTAGCAACCGCA
GATCATTTGTACTCGCTGGCTCTAGCATGG back to top
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