mRNA_H-paniculata_contig18089.4370.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18089.4370.1
Unique NamemRNA_H-paniculata_contig18089.4370.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18089.4370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18089contigH-paniculata_contig18089:3663..4878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size211
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929407.8852932-CDS-H-paniculata_contig18089:3662..37931622929407.8852932-CDS-H-paniculata_contig18089:3662..3793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18089 3663..3793 +
1691480848.1926992-CDS-H-paniculata_contig18089:3662..37931691480848.1926992-CDS-H-paniculata_contig18089:3662..3793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18089 3663..3793 +
1622929407.8981795-CDS-H-paniculata_contig18089:4798..48771622929407.8981795-CDS-H-paniculata_contig18089:4798..4877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18089 4799..4877 +
1691480848.202167-CDS-H-paniculata_contig18089:4798..48771691480848.202167-CDS-H-paniculata_contig18089:4798..4877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18089 4799..4877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18089.4370.1prot_H-paniculata_contig18089.4370.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18089 3663..4877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18089.4370.1

>prot_H-paniculata_contig18089.4370.1 ID=prot_H-paniculata_contig18089.4370.1|Name=mRNA_H-paniculata_contig18089.4370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
LWRRRLIVRGRLRSSWLLLMVREKRLQGEQKRLSWRLTRRGNSRSFLLCI
PRKANRIVPMNAIFLSGGSS
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mRNA from alignment at H-paniculata_contig18089:3663..4878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18089.4370.1 ID=mRNA_H-paniculata_contig18089.4370.1|Name=mRNA_H-paniculata_contig18089.4370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1216bp|location=Sequence derived from alignment at H-paniculata_contig18089:3663..4878+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCGTGGCT
TCTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGACTTT
CTTGGCGGCTTACAAGGAGGGGAAATTCAAGGTCAGTATAGAGTCGGAGA
TTGTCTAATGTTTGGCGTGGTGTTGTGTGCTACAGTCATCAACATCTACA
AGTAAATGTGTTACGCAAGCACTATCACTATCTGCAGTACCAAACAGCTG
AGCCAGTTATGAAAACTTTGTCAACGCCGATTGACAGACATGCCTTAGTA
GTAATGGCACCCGAAGAAAGCCACTTAAGGCTTGGACAATAGACGTACTA
ATTAACGGAAGCCGAATTGTTTAGTTGACATTGATGCATGTTGAGAAGCT
GTTTTGTTCGAGCTGCCGTTTCTTGATGATGCAGACACTTTTTATTATGC
TGTGTACAGTACGTACGTTGACTACTATATAATATACTCCCCCATGCTCC
CCTTGTCATACAGGCACCATCATCCCCGGCCAATGAGGTTCTCATTCGCC
ATGGTCTTCTACCGAATAGGGTCCCAGTTGATACAACGCCTGCCAAAATT
AAAGCCATGGTGACAGCAGAAGTGGAAAGGCAATGCGCCACTTTAAAGGC
TCAGAGACAGGCAGAGATCAACGATGGTTCGAACGCCTACGAGCTTAATG
AAGAAGGAAAACACGAGGCCCAAGACATAGCAGCACACAAGATCAACGAG
ATCGTCACCCTGAGCTTTGGCTACACCCTTGCCTCCAGCGGGTCATCAGA
GGAGGAGGTAAGCAGGCGCTCAATACTGTCTTTTGTCTAAGTTTCAGATC
CATAGTATAACAAGCAATTAGCAAGGGTTATGTGTCCTTATCGTAAGTAG
TGGAGTTGTATGTTGGACTTACTTACGAAAGGGCGGGATTTTGGCAGAGC
GACACCCTACCCTTCTTCATCGTGTCATATGCTGGCTGCTTTATTGCTGC
GTCTGTGCCTTATGTTTATGAACATTAATGTTGATCCTCTGCTGATCCTT
TTACAGATGACTGAGTAAAATGTTTGTCATGGCTCAACATTGTCCGCACG
AACCTACCGTCTTTGATATGGCTTTACTTACAACAGGTCGTTCCTTCTCT
GCATTCCAAGGAAGGCGAATCGTATAGTCCCAATGAACGCGATCTTCCTG
TCTGGGGGCTCTTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18089:3663..4878+

>mRNA_H-paniculata_contig18089.4370.1 ID=mRNA_H-paniculata_contig18089.4370.1|Name=mRNA_H-paniculata_contig18089.4370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig18089:3663..4878+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCGTGGCT
TCTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGACTTT
CTTGGCGGCTTACAAGGAGGGGAAATTCAAGTTATGGAGACGGCGCTTGA
TCGTGCGAGGAAGGTTGAGGTCTTCGTGGCTTCTTCTGATGGTGCGCGAG
AAGAGGTTGCAAGGCGAGCAGAAACGACTTTCTTGGCGGCTTACAAGGAG
GGGAAATTCAAGGTCGTTCCTTCTCTGCATTCCAAGGAAGGCGAATCGTA
TAGTCCCAATGAACGCGATCTTCCTGTCTGGGGGCTCTTCAGTCGTTCCT
TCTCTGCATTCCAAGGAAGGCGAATCGTATAGTCCCAATGAACGCGATCT
TCCTGTCTGGGGGCTCTTCA
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