mRNA_H-paniculata_contig18056.4360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 238 bits (607), Expect = 2.750e-72 Identity = 115/200 (57.50%), Postives = 135/200 (67.50%), Query Frame = 1
Query: 1 RRATGDYHDAMTDKIFMDWLEHRLKPAFKEMFLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRK------------------------------------EIAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGDP 492
+RATGDYHDAMTDK+FM+WLE RL PAFK + NKKMILVLDNASYHHGYD EVGVPE+NSK YN LLR + + I V R+ E+A AT AF Q K+P +L+E+VE FM+ GW+LIWTPPYMPSFQPIE FWQHGKQYVSFN+K+ R++ EVW Q+R WYGDP
Sbjct: 362 KRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKYTFQVPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDP 561
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE) HSP 1 Score: 220 bits (560), Expect = 1.520e-66 Identity = 104/192 (54.17%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEMFLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRK------------------------------EIAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGDP 492
ATGDYH+AMTD +FM WL+HRL PAF F NKKM LVLDNASYHH +D EV VPETNSKKYNV+LLR S V R+ EIA+ T + ++ +P++L E+ E +M ++GW LIWTPPYMP+FQPIE FWQHGK YVS +++ GR+IL+VW+QIRL WYGDP
Sbjct: 247 ATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDP 438
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE) HSP 1 Score: 219 bits (557), Expect = 1.770e-66 Identity = 103/192 (53.65%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEMFLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRK------------------------------EIAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGDP 492
ATGDYH+AMTD +FM WL+HRL PAF F NKKM LVLDNASYHH +D EV VPETNSKKYNV+LLR S V R+ EIA+ T + ++ +P++L E+ E +M ++GW LIWTPPYMP+FQPIE FWQHGK YVS +++ GR++L+VW+QIRL WYGDP
Sbjct: 209 ATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDP 400
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE) HSP 1 Score: 219 bits (557), Expect = 3.320e-66 Identity = 103/192 (53.65%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEMFLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRK------------------------------EIAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGDP 492
ATGDYH+AMTD +FM WL+HRL PAF F NKKM LVLDNASYHH +D EV VPETNSKKYNV+LLR S V R+ EIA+ T + ++ +P++L E+ E +M ++GW LIWTPPYMP+FQPIE FWQHGK YVS +++ GR++L+VW+QIRL WYGDP
Sbjct: 291 ATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDP 482
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE) HSP 1 Score: 213 bits (543), Expect = 1.240e-65 Identity = 108/194 (55.67%), Postives = 126/194 (64.95%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEM--FLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRKE-------------------------------IAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGD 489
A GDYH AMTD +FM+WLEHRL PA+ + F K+MILVLDNASYHHG+D +V +PE+N+KK+NVDLLR AKSI V RKE +A AT +I +PERL ERV FM K+GW LIWTPPYMPSFQPIE FWQHGKQYVS N++ R + EVW QIR WYGD
Sbjct: 90 AKGDYHAAMTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKSIRVKRKEGEQGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGD 283
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 221 bits (562), Expect = 1.600e-65 Identity = 113/196 (57.65%), Postives = 127/196 (64.80%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEM--FLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRKE---------------------------------IAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGD 489
A GDYH AMTD +FM+WLEHRL PA+ + F KKMILVLDNASYHHG+D EV VPETN+KK+NVDLLR AKSI V RKE +A AT +I+ YPERL ERV FM K+GW LIWTPPYMPSFQPIE FWQHGKQYVS N++ R + EVW QIR WYGD
Sbjct: 394 AKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGD 589
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE) HSP 1 Score: 214 bits (545), Expect = 3.960e-64 Identity = 110/196 (56.12%), Postives = 126/196 (64.29%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEM--FLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRKE---------------------------------IAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGD 489
A GD+H AMTD +FM+WLEHRL PA+ + F K+MILVLDNASYHHG+D EV VPETN+KK+NVDLLR AKSI V RKE +A AT +I +PERL ERV FM K+GW LIWTPPYMPSFQPIE FWQHGKQYVS N++ R + EVW QIR WYGD
Sbjct: 259 AKGDHHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGD 454
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 216 bits (550), Expect = 5.090e-64 Identity = 111/196 (56.63%), Postives = 126/196 (64.29%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEM--FLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRKE---------------------------------IAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGD 489
A GDYH AMTD +FM+WLEHRL PA+ + F K+MILVLDNASYHHG+D EV VPETN+KK+NVDLLR AKSI V RKE +A AT +I +PERL ERV FM K+GW LIWTPPYMPSFQPIE FWQHGKQYVS N++ R + EVW QIR WYGD
Sbjct: 360 AKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGD 555
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE) HSP 1 Score: 208 bits (529), Expect = 6.000e-64 Identity = 107/191 (56.02%), Postives = 123/191 (64.40%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEM--FLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRKE-------------------------------IAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCW 480
A GDYH AMTD +FM+WLEHRL PA+ + F ++MILVLDNASYHHG+D EV VPETN+KK+NVDLLR AKSI V RKE +A AT +I +PERL ERV FM K+GW LIWTPPYMPSFQPIE FWQHGKQYVS N++ R + EVW QIR W
Sbjct: 143 AKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGRQMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGW 333
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE) HSP 1 Score: 212 bits (540), Expect = 6.070e-64 Identity = 109/196 (55.61%), Postives = 125/196 (63.78%), Query Frame = 1
Query: 7 ATGDYHDAMTDKIFMDWLEHRLKPAFKEM--FLNKKMILVLDNASYHHGYDPEVGVPETNSKKYNVDLLRNCEAKSIAVPRKE---------------------------------IAAATWAFIQEKYPERLVERVEAFMSKEGWELIWTPPYMPSFQPIEFFWQHGKQYVSFNYKSGRSILEVWEQIRLCWYGD 489
A GDYH AMTD +FM+WLEHRL PA+ + F K+MILVLDNASYHHG+D EV VPE+N+KK+NVDLLR AKSI V RKE +A AT +I +PERL ERV FM K+GW LIWTPPYMPSFQPIE FWQHGKQYVS ++ R + EVW QIR WYGD
Sbjct: 243 AKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGD 438 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18056.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18056.4360.1 >prot_H-paniculata_contig18056.4360.1 ID=prot_H-paniculata_contig18056.4360.1|Name=mRNA_H-paniculata_contig18056.4360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp MTDKIFMDWLEHRLKPAFKEMFLNKKMILVLDNASYHHGYDPEVGVPETNback to top mRNA from alignment at H-paniculata_contig18056:3128..3745- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18056.4360.1 ID=mRNA_H-paniculata_contig18056.4360.1|Name=mRNA_H-paniculata_contig18056.4360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig18056:3128..3745- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18056:3128..3745- >mRNA_H-paniculata_contig18056.4360.1 ID=mRNA_H-paniculata_contig18056.4360.1|Name=mRNA_H-paniculata_contig18056.4360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig18056:3128..3745- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |