mRNA_H-paniculata_contig18027.4350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18027.4350.1
Unique NamemRNA_H-paniculata_contig18027.4350.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.280e-35
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 576          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.310e-35
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 640          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.320e-35
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 784          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.590e-34
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAF QS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 371          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 9.320e-34
Identity = 67/159 (42.14%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA+ ++H  +   +M  E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S YGLKQASRT+
Sbjct:  146 PGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTF 304          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.630e-32
Identity = 69/159 (43.40%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLE-GNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA  S+H  V   +M+ E +GLV  GTF     +  G   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y  TFSPT   ++++  VA+A +  L++ H D+ QAFVQ++L   + ++L  G  T +GKVV+LN+S+YGLKQASRT+
Sbjct:  167 PDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTF 325          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.000e-32
Identity = 66/159 (41.51%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLE-GNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 474
            P +++EA  S+H  +   +M+ E +GL+  GTF     +  G   ID+ W +KWK D  G ++ AKA  VA+G  Q +G +Y +TFSPT   ++++  VA+A + +L++ H+D+ QAFVQS+L   + ++L  G  + +GKVV+LN+S+YGLKQASRT+
Sbjct:  780 PGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF 938          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.240e-32
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLEGNKPI-----DSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTWNAFLTKAL 498
            P +++EA  S++  +   +M+ E +GL+  GTF    TL    PI     D+ W +KWK D  G ++ AKA  VA+G +Q +G +Y +TFSPT   ++ +  VA+A +  L++ H+D+ QAFVQSEL   + ++L  G  + +GKVV+LN+S+YGLKQASRT+   L   L
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTF----TLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL 614          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.460e-32
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLEGNKPI-----DSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTWNAFLTKAL 498
            P +++EA  S++  +   +M+ E +GL+  GTF    TL    PI     D+ W +KWK D  G ++ AKA  VA+G +Q +G +Y +TFSPT   ++ +  VA+A +  L++ H+D+ QAFVQSEL   + ++L  G  + +GKVV+LN+S+YGLKQASRT+   L   L
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTF----TLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL 881          
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.380e-31
Identity = 62/154 (40.26%), Postives = 101/154 (65.58%), Query Frame = 1
Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQ 459
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YG K+
Sbjct:  832 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGTKR 985          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDZ0_9PHAE2.280e-3542.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE2.310e-3542.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.320e-3542.77CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JV80_9PHAE1.590e-3442.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE9.320e-3442.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE1.630e-3243.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE3.000e-3241.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE7.240e-3240.94Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE7.460e-3240.94Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K622_9PHAE1.380e-3140.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18027contigH-paniculata_contig18027:3657..4154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.5
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.337895-CDS-H-paniculata_contig18027:3656..41541622929405.337895-CDS-H-paniculata_contig18027:3656..4154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18027 3657..4154 +
1691480846.8882332-CDS-H-paniculata_contig18027:3656..41541691480846.8882332-CDS-H-paniculata_contig18027:3656..4154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18027 3657..4154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18027.4350.1prot_H-paniculata_contig18027.4350.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18027 3657..4154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18027.4350.1

>prot_H-paniculata_contig18027.4350.1 ID=prot_H-paniculata_contig18027.4350.1|Name=mRNA_H-paniculata_contig18027.4350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLEGNKPIDSMWS
YKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAV
ANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYG
LKQASRTWNAFLTKAL
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mRNA from alignment at H-paniculata_contig18027:3657..4154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18027.4350.1 ID=mRNA_H-paniculata_contig18027.4350.1|Name=mRNA_H-paniculata_contig18027.4350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig18027:3657..4154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCTAACTTTAAAGAGGCTGTGACCTCGCAGCACTGGAATGTGCGGCG TAATTCTATGAATTTAGAAAATGATGGTCTAGTTGAGACTGGCACGTTTG AGGAAGAAACAACGTTGGAAGGCAACAAACCAATTGACTCTATGTGGTCG TACAAGTGGAAACAGGACCCAGATGGCATGGTAATTGGGGCTAAAGCTAC ATCTGTAGCTCGAGGAGACGAACAGATCCATGGACAAAATTATGACGACA CATTTTCTCCTACACCAGTTATGTCAACAGTCAAAACAGGAGTTGCAGTG GCGAATGAACTAGAATTAGACATGTACCATTTCGACGTAGCCCAAGCGTT TGTACAGAGCGAGTTGAAAGATGGCATTCACCTGCGATTGACTGAGGGGT GGGATACAGCTGCGGGTAAAGTGGTGAAATTGAATCGTTCAATCTACGGT CTCAAACAGGCCTCGAGGACTTGGAATGCTTTCCTTACGAAAGCACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig18027:3657..4154+

>mRNA_H-paniculata_contig18027.4350.1 ID=mRNA_H-paniculata_contig18027.4350.1|Name=mRNA_H-paniculata_contig18027.4350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig18027:3657..4154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTCTAACTTTAAAGAGGCTGTGACCTCGCAGCACTGGAATGTGCGGCG
TAATTCTATGAATTTAGAAAATGATGGTCTAGTTGAGACTGGCACGTTTG
AGGAAGAAACAACGTTGGAAGGCAACAAACCAATTGACTCTATGTGGTCG
TACAAGTGGAAACAGGACCCAGATGGCATGGTAATTGGGGCTAAAGCTAC
ATCTGTAGCTCGAGGAGACGAACAGATCCATGGACAAAATTATGACGACA
CATTTTCTCCTACACCAGTTATGTCAACAGTCAAAACAGGAGTTGCAGTG
GCGAATGAACTAGAATTAGACATGTACCATTTCGACGTAGCCCAAGCGTT
TGTACAGAGCGAGTTGAAAGATGGCATTCACCTGCGATTGACTGAGGGGT
GGGATACAGCTGCGGGTAAAGTGGTGAAATTGAATCGTTCAATCTACGGT
CTCAAACAGGCCTCGAGGACTTGGAATGCTTTCCTTACGAAAGCACTCCC
GTCTAACTTTAAAGAGGCTGTGACCTCGCAGCACTGGAATGTGCGGCGTA
ATTCTATGAATTTAGAAAATGATGGTCTAGTTGAGACTGGCACGTTTGAG
GAAGAAACAACGTTGGAAGGCAACAAACCAATTGACTCTATGTGGTCGTA
CAAGTGGAAACAGGACCCAGATGGCATGGTAATTGGGGCTAAAGCTACAT
CTGTAGCTCGAGGAGACGAACAGATCCATGGACAAAATTATGACGACACA
TTTTCTCCTACACCAGTTATGTCAACAGTCAAAACAGGAGTTGCAGTGGC
GAATGAACTAGAATTAGACATGTACCATTTCGACGTAGCCCAAGCGTTTG
TACAGAGCGAGTTGAAAGATGGCATTCACCTGCGATTGACTGAGGGGTGG
GATACAGCTGCGGGTAAAGTGGTGAAATTGAATCGTTCAATCTACGGTCT
CAAACAGGCCTCGAGGACTTGGAATGCTTTCCTTACGAAAGCACTC
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