mRNA_H-paniculata_contig18006.4346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18006.4346.1
Unique NamemRNA_H-paniculata_contig18006.4346.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18006.4346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18006contigH-paniculata_contig18006:200..4115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size632
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18006.4346.1prot_H-paniculata_contig18006.4346.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18006 200..4115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.0732524-CDS-H-paniculata_contig18006:199..3551622929405.0732524-CDS-H-paniculata_contig18006:199..355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18006 200..355 -
1691480846.7926037-CDS-H-paniculata_contig18006:199..3551691480846.7926037-CDS-H-paniculata_contig18006:199..355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18006 200..355 -
1622929405.0973008-CDS-H-paniculata_contig18006:2536..27131622929405.0973008-CDS-H-paniculata_contig18006:2536..2713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18006 2537..2713 -
1691480846.8010547-CDS-H-paniculata_contig18006:2536..27131691480846.8010547-CDS-H-paniculata_contig18006:2536..2713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18006 2537..2713 -
1622929405.1126783-CDS-H-paniculata_contig18006:3818..41151622929405.1126783-CDS-H-paniculata_contig18006:3818..4115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18006 3819..4115 -
1691480846.808931-CDS-H-paniculata_contig18006:3818..41151691480846.808931-CDS-H-paniculata_contig18006:3818..4115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18006 3819..4115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18006.4346.1

>prot_H-paniculata_contig18006.4346.1 ID=prot_H-paniculata_contig18006.4346.1|Name=mRNA_H-paniculata_contig18006.4346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MNTTLLYNAASQGTSLSRPESSWEASPRSGGSPRWQQWREQQQQQQPVGQ
RGYEVDVRGAWDVDDDARGLMRGWRARDAVGESRGSKAAELPPGYRFGMN
AIPSATPRRLINAMINSARFPSKSATGLATRFARSADRVYPLSASNGVAN
WREMKDEQEIANRSLNDLRQKARLQLEKNASAIEHRNPEGAEQLRRDGRD
LENWAREAAE
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mRNA from alignment at H-paniculata_contig18006:200..4115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18006.4346.1 ID=mRNA_H-paniculata_contig18006.4346.1|Name=mRNA_H-paniculata_contig18006.4346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3916bp|location=Sequence derived from alignment at H-paniculata_contig18006:200..4115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACACGACCCTCCTGTACAACGCTGCTTCTCAGGGCACTTCCCTGAG
TCGCCCTGAGAGTTCGTGGGAAGCTTCGCCGAGGAGTGGTGGCAGCCCAC
GGTGGCAGCAATGGCGAGAGCAGCAGCAACAGCAGCAGCCTGTGGGACAG
CGTGGTTATGAGGTCGACGTGCGTGGAGCCTGGGATGTAGATGATGACGC
GCGGGGACTGATGAGGGGGTGGAGGGCGCGGGATGCGGTGGGAGAGTCAC
GAGGATCCAAGGCTGCCGAGTTGCCGCCTGGATATCGTTTCGGCATGGTA
GGTCATGTTATCTGGTGAATTCTAAAGTAAAATTTGTGATATCAGGAACG
TTCCTGACGTTCCTGGGGTTCCTTCCTTAACCCGGTCTCCTATAGAACAT
TCAGTGGCTATTTGTGTCCCATCATTGGAACAGCTTTAGTTGCTGCTTCC
GATCTTGGATCATGACCAACCACTTCATCCCAATTCACAAAATCAAAATG
AATATAAACAGGGGTCAACGCTTTATTTATCCTGTGTGCCTGCGTATATC
CTGAACCAAGAAGTGAAAAATTGTTATATTTTCGTCTAAACCGTTCGAAG
TATTCACGTTCGCATTTGCATTCGATTCGCATTCGTACCCATATTCGTAT
TCGTATTCGTATTCGTAAAGAATTATCAAATTGAGGGGAGCATATTTTGC
GGGCAGGATATTTCGGTTTGGTGCGTTGTTTTGATTAGCTTTTGTTGCTG
GTGGTATCGTGTAGTTTGCCTTGCAAAAGTCTTGCTTCGAGTCATTCGAT
TTTTTCGTTGCGTGTTGCACCAGTCCCGTTTTGTCATTCTCTATTTCCGG
TCTGTAAGAAGTAATCAATTGATATTTTGCATTATTTTGATATATGTATA
TCGTACACATATTTTGTCGGTATTGGGTGGTACATGCCCTCCGTGACCGG
GGATTAGTTTGGAAATCTTAAAGCCTTGAGGAAGAATTTCTGGCCCACTA
TTAGCTGTAGAGTGCTTGTCTATATTTTGGACGTCACCAAAAAAATCAGT
GATCCTCTCTTTTCGCTCTCTACTACTGTTTCGTGTTTTACCTGCAGTAC
ACACGCAAGTGATACAGTGATACTCCATTGTGAAGTTCAAGGTTGCCGTA
GCTCATGTCGTGCCTGGTCGAAGAGATGCGGAAATTTCTGGTACCTGGAC
ATGATTGGGCTAGAATTCATGTAATTTCAACAGGATCCTGTCGATTGATC
TATCAAACTGCAAACCAAATATCCATCAAGACTGTTCGAAATTCAATTTA
ACTGGTAAGCACCCCCCCCATGCGCGTTTTCTTTTTGAACTGCCTGCTCT
GCTCTGTCCCCTCCTAATTTGAAAAACAAAAAAAATGTGCACGGCTGAGC
AGAATGCTATCCCAAGCGCCACCCCGCGGCGCCTCATCAACGCCATGATC
AATTCCGCGCGCTTCCCCTCCAAATCGGCTACCGGATTGGCCACCAGATT
CGCCCGCTCCGCCGATCGTGTGTACCCACTGTCCGCCTCGAACGGCGTCG
CCAATTGGAGGGAAATGAAGGATGAACAGGTGTGTGAATTCGGTAAATTA
CGACGACCATCGGAATTGGACGGCATTCCTTGGAGTGGATTTTGGATTTC
GGGGTGGATTTGGGTTTAAATGTAGTGTGGACGTACATGCAGCTGTGTTC
TACTAATTAATCCATTTTCGAAACAGTGAACAGAAGCATGCATCGTTCTT
GCACACAGGTGTCATAAGGGTCAAATAGAAATTTACTGACAAAAATATGC
TGTGGCGCAAACACTCTAATACCACGGCGGGAAAACACCCTAATCAGTAC
AAGTCATGGGACTGAAAAAATCTCTTGGAAAAACAATCAATCGCTGCGTT
TTGTTTTTTGGAACATTTGAATATTGTTTACAGCAAAAGAGATGAGAGAT
CAGGGATGTACGTTATCGGGGAGTTATTTTTTTGAGAAATCGCGATGAAG
TAGTGTAACAATGTAGGAGACATGAGCTAATTACTTCCTACGTCTTAGCG
TGGTGCGGAATGGCAGTGTGTTGTGCTTTTGCCCCAAAGCGTTGATTATC
GATAAGTAATTTGGGGTAACGTACTGGATGTCCTTTCAAGATTCACGTTT
GGAGGCTAGACGTGCTCTGATATTGACACGAAAGCCCCCTCAAAGCAGCC
GGTATAGGTGGCAAGGTGAAAGAGGTCTCACCTCTCCGACCATGCAGCTC
GTTGCCTTGGACGACGAGAGCTGCTGCACTCATTGCGAAGGAATTGTGTG
TCTTGTCTTGTTTTTCAGAACCGCTTTTTCACAATAATCATCGTTTAAAA
AGCAGTTTCGTTGTGGCAACACTGGGATCGAAGAGCCTTTTGCACAATGT
GCACACTGACGGTGGGTGGGCAGTCGGCAGCATGGTATTTATACAGCTGC
TGGATAATGACATATCAGATAGTTGGGAAGAACTCGAGACGAATTTTTTC
CTTTTGAGGGTTCGCTTTTTCTTTTTTTAATGCTATTTTATCAACGGCGG
TGATACAGATCTTGTAGATCACATAGATCACAAATGTACAATATTGTGCT
ATTCATCGTAAATACACCATGTACATCCTGGAACGTACGTTTTCCGTCGA
TCGGTAGTTACTGAATCGCACTGTAAATGCAGAGAGTGGATTAACCCGTA
GAGTTACGTTGGGATGTGCATATACTTAATTAACCCGCAGAATTACGTTG
GGATGTAAGTATAGTTAAATAACACGTAGAGTCACGTTGCGATGTAAATA
CAGTTAATTAACCCGCATATTTACGTTGCGATGTAAGTATAGTTAATTAT
TGTCTTCGGACCTCTCCCCTCCCGCCGTTGGTGCAAACGCTTGATCACTT
TTTCGAAAACATGAAAAAAAAACTCCCGATGAAGCAAACACCGATGACAA
GCATGATGCACAACCATATAGGTATACAGCAGGAACTAGAAGGGGGCCGG
CGGGGAAATATTCCCCCGATCAGTCATGAGCTTTTCTCGGGATGAAGGTG
TCCAATGCAATTGTTCCACCCAAGACGATAATCCGAGCATTAGAAAGTAT
GTTTCCAGTTCCCCTATAGCGCTTACGCGTCATATACCATAGCGTAAAAC
AGCAATGAGCTTCAAGCGAAGCAAATTTTAGGCCTTAGACACACGCGAGG
GACACATGGCTCAGCAAGGTCTGCCCGCTCCGGACTCTCAAGCATATAAC
AGCGACGCCAACGCAATTGAAGCTCAGCTTACAGTGGACAGCCAGTTTCA
AACAAAATATACTTGCCCTGAAATTACTACAGACGGTACATACAATATAG
ACAGTATAGACAAGGCAGTCAACACAGACAGTCGGTAGAGACAGACAGAT
AGACAGCTGCAGTCTGTAACAGGGATTTGAGGCACGACAGCGTTGAAGTA
CACACAGTACAATACAGGGACCAGCACTGACATTTTGAACACCTCTACGT
TGCATGTGAGGCAGGCAGTTGCATGTAATCTCAGATCTATGAATAGAGAC
CGTTACGTTGAGCGGACCACACACTACAATTGTTGTTATGGCTTTTCCAA
CCGTCGACGCGTAGCTTGGGCAGATCCAAACTGGCGATGTGTATGTATAC
ATGGGGTGATTAGACCACAGAGTTGCTGTGTCTACCATACGTGCGTGTCT
ATGTATTTTGAATTCTAGTATATGTCTTGATGGTGTCTTGATGTGATACC
CTCAATTCAGGAAATCGCCAACAGAAGCCTGAATGATCTGCGCCAGAAGG
CTCGGCTACAGCTGGAAAAGAACGCCTCCGCGATCGAGCACCGAAACCCC
GAGGGCGCAGAGCAGTTGCGGCGGGACGGGCGAGACTTGGAGAACTGGGC
GAGAGAGGCCGCTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18006:200..4115-

>mRNA_H-paniculata_contig18006.4346.1 ID=mRNA_H-paniculata_contig18006.4346.1|Name=mRNA_H-paniculata_contig18006.4346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig18006:200..4115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACACGACCCTCCTGTACAACGCTGCTTCTCAGGGCACTTCCCTGAG
TCGCCCTGAGAGTTCGTGGGAAGCTTCGCCGAGGAGTGGTGGCAGCCCAC
GGTGGCAGCAATGGCGAGAGCAGCAGCAACAGCAGCAGCCTGTGGGACAG
CGTGGTTATGAGGTCGACGTGCGTGGAGCCTGGGATGTAGATGATGACGC
GCGGGGACTGATGAGGGGGTGGAGGGCGCGGGATGCGGTGGGAGAGTCAC
GAGGATCCAAGGCTGCCGAGTTGCCGCCTGGATATCGTTTCGGCATGATG
AACACGACCCTCCTGTACAACGCTGCTTCTCAGGGCACTTCCCTGAGTCG
CCCTGAGAGTTCGTGGGAAGCTTCGCCGAGGAGTGGTGGCAGCCCACGGT
GGCAGCAATGGCGAGAGCAGCAGCAACAGCAGCAGCCTGTGGGACAGCGT
GGTTATGAGGTCGACGTGCGTGGAGCCTGGGATGTAGATGATGACGCGCG
GGGACTGATGAGGGGGTGGAGGGCGCGGGATGCGGTGGGAGAGTCACGAG
GATCCAAGGCTGCCGAGTTGCCGCCTGGATATCGTTTCGGCATGAATGCT
ATCCCAAGCGCCACCCCGCGGCGCCTCATCAACGCCATGATCAATTCCGC
GCGCTTCCCCTCCAAATCGGCTACCGGATTGGCCACCAGATTCGCCCGCT
CCGCCGATCGTGTGTACCCACTGTCCGCCTCGAACGGCGTCGCCAATTGG
AGGGAAATGAAGGATGAACAGAATGCTATCCCAAGCGCCACCCCGCGGCG
CCTCATCAACGCCATGATCAATTCCGCGCGCTTCCCCTCCAAATCGGCTA
CCGGATTGGCCACCAGATTCGCCCGCTCCGCCGATCGTGTGTACCCACTG
TCCGCCTCGAACGGCGTCGCCAATTGGAGGGAAATGAAGGATGAACAGGA
AATCGCCAACAGAAGCCTGAATGATCTGCGCCAGAAGGCTCGGCTACAGC
TGGAAAAGAACGCCTCCGCGATCGAGCACCGAAACCCCGAGGGCGCAGAG
CAGTTGCGGCGGGACGGGCGAGACTTGGAGAACTGGGCGAGAGAGGCCGC
TGAAGAAATCGCCAACAGAAGCCTGAATGATCTGCGCCAGAAGGCTCGGC
TACAGCTGGAAAAGAACGCCTCCGCGATCGAGCACCGAAACCCCGAGGGC
GCAGAGCAGTTGCGGCGGGACGGGCGAGACTTGGAGAACTGGGCGAGAGA
GGCCGCTGAA
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