mRNA_H-paniculata_contig1799.4337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1799.4337.1
Unique NamemRNA_H-paniculata_contig1799.4337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: D7G0A4_ECTSI (Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D7G0A4_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 1.790e-135
Identity = 197/205 (96.10%), Postives = 201/205 (98.05%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASKKKAGCC 1164
            M+RN+SPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWV QIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKND+NVEKGFITIAREVKDRLMADGPN G+R AGNVNLNAQASKKK GCC
Sbjct:    1 MSRNESPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNPGSRAAGNVNLNAQASKKKTGCC 205
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BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A836CCB2_9STRA (Rab8A, rab family GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB2_9STRA)

HSP 1 Score: 352 bits (902), Expect = 3.680e-118
Identity = 177/206 (85.92%), Postives = 191/206 (92.72%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASK-KKAGCC 1164
            MAR++SPFDMQIKLLMIGDSGVGKTCLLLRYA+D FSQTFITTIGIDFKIKNI+LD+KR+KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSF SIRNWV QIQQHADV VNKILIGNKCD+D +REVS EEGAQLAAEYGIQFFETSAKND+NVEKGFIT+AREVK+RLMADG +QGAR  GNV L+A A   KK+ CC
Sbjct:    1 MARHESPFDMQIKLLMIGDSGVGKTCLLLRYASDHFSQTFITTIGIDFKIKNIELDTKRVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFQSIRNWVAQIQQHADVHVNKILIGNKCDIDNEREVSTEEGAQLAAEYGIQFFETSAKNDINVEKGFITVAREVKNRLMADGGSQGARTQGNVALSAPAKGGKKSSCC 206
[Close]
BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A6H5KYQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ5_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 1.120e-106
Identity = 160/167 (95.81%), Postives = 164/167 (98.20%), Query Frame = 1 
Query:  664 TFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASKKKAGCC 1164
            TFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSF+SIRNWV QIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKND+NVEKGFITIAREVKDRLMADGPN G+R +GNVNLNAQASKKKAGCC
Sbjct:    8 TFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFSSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNPGSRASGNVNLNAQASKKKAGCC 174
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BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: K3WPX9_GLOUD (Uncharacterized protein n=28 Tax=Oomycota TaxID=4762 RepID=K3WPX9_GLOUD)

HSP 1 Score: 321 bits (823), Expect = 2.980e-106
Identity = 161/205 (78.54%), Postives = 180/205 (87.80%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASKKKAGCC 1164
            MAR+++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKNI+LD+K++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWVGQIQQHADV VNKILIGNKCDM +D+ VS EEG  LA EYG++FFETSAKN++NVE GFI IAREVK+RLM +G   G     NVNL+A+ +  K GCC
Sbjct:    1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIAREVKNRLMEEG---GPHKKENVNLSAKPAAPKKGCC 202
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BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A4D9D279_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D279_9STRA)

HSP 1 Score: 312 bits (799), Expect = 1.330e-102
Identity = 158/206 (76.70%), Postives = 176/206 (85.44%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNL-NAQASKKKAGCC 1164
            MAR ++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWVGQIQQHADV VNKILIGNKCDM   R VS EEG  LA ++GIQFFETSAKND+NVEK F+TIAREVK+R++ DG   G R  G   + +A+ S +   CC
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDG---GPRATGGKAIVDAKRSNEAKKCC 203
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BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A024TZG5_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TZG5_9STRA)

HSP 1 Score: 311 bits (797), Expect = 3.510e-102
Identity = 159/211 (75.36%), Postives = 177/211 (83.89%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADG-PNQGARVAGNVNLNAQASKK-----KAGCC 1164
            MARN++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFK+KNIDLD K+IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWVGQIQQHADV VNKIL+GNKCDM +D+ VS EEG  LA EYG++FFETSAKN++NVE GFI IA EVK RLM +G P++ + +  N+        K     K GCC
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKSDLVVNLGKKGNDPTKASNGGKGGCC 211
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BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A7S4M6F2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M6F2_9STRA)

HSP 1 Score: 309 bits (792), Expect = 1.680e-101
Identity = 154/206 (74.76%), Postives = 178/206 (86.41%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAG-NVNLNAQASKKKAGCC 1164
            M++  +P+DMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN+D+D KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKIL+GNKCDM +++ VS EEGA+LA E+GI+F+E SAKND+NVE+ FI IAR+VKDRL+ADG    A   G ++N   Q S++  GCC
Sbjct:    1 MSQQSAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDIDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVSQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGAKLAKEFGIEFWECSAKNDINVEQAFIGIARDVKDRLVADGGGGPAANKGLSLNKPGQGSQRNRGCC 206
[Close]
BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: W7TKL6_9STRA (Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKL6_9STRA)

HSP 1 Score: 310 bits (794), Expect = 1.760e-100
Identity = 164/226 (72.57%), Postives = 183/226 (80.97%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNL-NAQASKKKAGCC*DGSCGGFFLSVSGGGGGSD 1224
            MAR ++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWVGQIQQHADV VNKILIGNKCDM   R VS EEG  LA ++GIQFFETSAKND+NVEK F+TIAREVK+R++ DG   G R  G   + +A+ S +   C   G   G    V  GG GS+
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDG---GPRATGGKAIVDAKRSNEAKKCWSRGWNEGVGRHVRCGGRGSN 223
[Close]
BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A6T5Q365_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q365_HETAK)

HSP 1 Score: 306 bits (784), Expect = 2.730e-100
Identity = 155/202 (76.73%), Postives = 173/202 (85.64%), Query Frame = 1 
Query:  550 MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASKKKA 1155
            MAR+++ +DMQIKLLMIGDSGVGKTCLLLRYAN +FSQTFITTIGIDFKIKNI LD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV QIQQHADV VNKILIGNKCDM ++R V+ EEG +LAAEYGIQFFETSAKND+ VE+ F+T+AREVK+RL+ D      +    VNL  Q S  K+
Sbjct:    1 MARHENAYDMQIKLLMIGDSGVGKTCLLLRYANAAFSQTFITTIGIDFKIKNITLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRNSFNSIRNWVSQIQQHADVHVNKILIGNKCDMKDERVVTTEEGQKLAAEYGIQFFETSAKNDIQVEESFVTVAREVKERLINDVDR---KTDARVNLQTQKSSSKS 199
[Close]
BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Match: A0A7S2V1J6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1J6_9STRA)

HSP 1 Score: 305 bits (782), Expect = 3.750e-100
Identity = 157/196 (80.10%), Postives = 166/196 (84.69%), Query Frame = 1 
Query:  577 MQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASKKKAGCC 1164
            MQIKLLMIGDSGVGKTCLLLRYAN SFSQTFITTIGIDFKIK IDLD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+KSFNSIRNW+ QIQQHADV VNKIL GNKCDM E+R V+ EEG +LA+EYGI FFE SAKNDVNVE  F+TIAREVKDRL+ D     AR    VNL      KK+GCC
Sbjct:    1 MQIKLLMIGDSGVGKTCLLLRYANSSFSQTFITTIGIDFKIKTIDLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRKSFNSIRNWISQIQQHADVHVNKILCGNKCDMSEERAVTTEEGQKLASEYGIGFFEASAKNDVNVETSFVTIAREVKDRLLLDVGTM-ARGGERVNLGNAKPAKKSGCC 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1799.4337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0A4_ECTSI1.790e-13596.10Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxI... [more]
A0A836CCB2_9STRA3.680e-11885.92Rab8A, rab family GTPase n=2 Tax=Tribonema minus T... [more]
A0A6H5KYQ5_9PHAE1.120e-10695.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WPX9_GLOUD2.980e-10678.54Uncharacterized protein n=28 Tax=Oomycota TaxID=47... [more]
A0A4D9D279_9STRA1.330e-10276.70Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A024TZG5_9STRA3.510e-10275.36Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S4M6F2_9STRA1.680e-10174.76Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7TKL6_9STRA1.760e-10072.57Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A6T5Q365_HETAK2.730e-10076.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V1J6_9STRA3.750e-10080.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1799contigH-paniculata_contig1799:7628..14123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.3
Seed ortholog evalue2.2e-108
Seed eggNOG ortholog2880.D7G0A4
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
Ec32 ortholog descriptionRab8A, RAB family GTPase
Ec32 orthologEc-14_005110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Exons6
Model size1274
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1799.4337.1prot_H-paniculata_contig1799.4337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1799 8796..14016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.5458727-UTR-H-paniculata_contig1799:7627..81251622929403.5458727-UTR-H-paniculata_contig1799:7627..8125Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1799 7628..8125 +
1691480846.0057724-UTR-H-paniculata_contig1799:7627..81251691480846.0057724-UTR-H-paniculata_contig1799:7627..8125Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1799 7628..8125 +
1622929403.5629375-UTR-H-paniculata_contig1799:8744..87951622929403.5629375-UTR-H-paniculata_contig1799:8744..8795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1799 8745..8795 +
1691480846.0225105-UTR-H-paniculata_contig1799:8744..87951691480846.0225105-UTR-H-paniculata_contig1799:8744..8795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1799 8745..8795 +
1622929403.644873-UTR-H-paniculata_contig1799:14016..141231622929403.644873-UTR-H-paniculata_contig1799:14016..14123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1799 14017..14123 +
1691480846.096495-UTR-H-paniculata_contig1799:14016..141231691480846.096495-UTR-H-paniculata_contig1799:14016..14123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1799 14017..14123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.5766323-CDS-H-paniculata_contig1799:8795..88561622929403.5766323-CDS-H-paniculata_contig1799:8795..8856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 8796..8856 +
1691480846.0381026-CDS-H-paniculata_contig1799:8795..88561691480846.0381026-CDS-H-paniculata_contig1799:8795..8856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 8796..8856 +
1622929403.5877047-CDS-H-paniculata_contig1799:10082..101851622929403.5877047-CDS-H-paniculata_contig1799:10082..10185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 10083..10185 +
1691480846.0484498-CDS-H-paniculata_contig1799:10082..101851691480846.0484498-CDS-H-paniculata_contig1799:10082..10185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 10083..10185 +
1622929403.6037378-CDS-H-paniculata_contig1799:12256..124251622929403.6037378-CDS-H-paniculata_contig1799:12256..12425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 12257..12425 +
1691480846.0594137-CDS-H-paniculata_contig1799:12256..124251691480846.0594137-CDS-H-paniculata_contig1799:12256..12425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 12257..12425 +
1622929403.6175475-CDS-H-paniculata_contig1799:12946..130121622929403.6175475-CDS-H-paniculata_contig1799:12946..13012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 12947..13012 +
1691480846.0702581-CDS-H-paniculata_contig1799:12946..130121691480846.0702581-CDS-H-paniculata_contig1799:12946..13012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 12947..13012 +
1622929403.6323378-CDS-H-paniculata_contig1799:13797..140161622929403.6323378-CDS-H-paniculata_contig1799:13797..14016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 13798..14016 +
1691480846.0828896-CDS-H-paniculata_contig1799:13797..140161691480846.0828896-CDS-H-paniculata_contig1799:13797..14016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1799 13798..14016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1799.4337.1

>prot_H-paniculata_contig1799.4337.1 ID=prot_H-paniculata_contig1799.4337.1|Name=mRNA_H-paniculata_contig1799.4337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MARNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKI
KNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFN
SIRNWVGQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQF
FETSAKNDVNVEKGFITIAREVKDRLMADGPNQGARVAGNVNLNAQASKK
KAGCC*
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mRNA from alignment at H-paniculata_contig1799:7628..14123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1799.4337.1 ID=mRNA_H-paniculata_contig1799.4337.1|Name=mRNA_H-paniculata_contig1799.4337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6496bp|location=Sequence derived from alignment at H-paniculata_contig1799:7628..14123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCAATAAAAAAACCAACGGGAATGGAACGAATATATGAATCTAGTGT
GAACATATTGGGTCCTGTCCGAAGTTCGGTGTACAATATATAATTATCAT
TATACAGGGGGCATCTCGTGATCAATCGGCCCAACTCCTCTCTGCAATAA
ACCAGCCCAAGTGCGCGCTGACCATAGTGTGAGGCTCGTAATATTATCGA
CGGGAAGAGGTGCTGTGCGAGCAGTGGAACAGAAGTTATCGGGGCTCAGT
ACAAGGTACATTCCATCGCTGCTGCAAACAGACTGGTGAAAGCGTCGCTC
TCTTCGTGGTGCCAACAGGCCGCAACAGCAGAGGAAAGCAGGCGAGCACA
CGAACAGACAGTCGAAGGGAAAGTCAGCAAATTCAGGGCTTCTTTTCTGA
AAGGAACACTTGAGAGGGCACCACAACAGACACAACCAATACAGCCTGCT
TGGGCCAATCTCTCCTCGACAGGGCAGCATCGTCGTAATTACACCAAGGT
GCGAGTACATGCTGGGGCAACGCAAATTCACCCCCTCCTAAGCCCCCCTT
TTCCACTAAAACAGTCATCAGCAGGCACTGCAGACGACAATCCGACGAGG
TACTGTACATAAAAAAGGAAAGGGAATTGTTTGGCAGTAGCAGCAATCAC
TTGGTAGTTCGCAAAAAGAGATGGGTGACGCCACACCTTTCCTGACAGCG
CTCTGATACACGGCTATAGCTGCTATGATCATAGATGCTGCCATGTGCCG
ACTTTTGGAGTTTTTTTCACTCCCTTGACTCTGAGGGGCTTGATCTCTGT
CTGATGCTTGGCCACTGTACTCAATTTTACACATTCTGTCTCGTTTCCCA
AGAAACTTTGTTTTTCTTCATACTTGGAAAAATAGTGTTTTTCACGAAAT
TTTCGTCTCCATGTTTTCCTCAAACTTTTGACTATTTCTGCACTTGACCC
TCGCTTCCCCCACCCCCCGTTTTATTTCAGTTTGCTCCCCCCCCTTAAAA
TCCGCCTTGTTTTTCTCGCTCCCAACCATGGGAAATGTGTGACTAACGTT
GCACCTACTCTAATGTACATACCTACCTTCGCTGTCGTGAACCTTTGAAA
AAACATGTATAACGTAGGGCGTTCGTACAAGGGCGGGAGAGGGGCCATCG
AAGGGGTAGGAGGAGACCATGGCACGAAATGATAGCCCTTTCGACATGCA
GATCAAGCTGCTGATGATCGGAGACAGTGGTAAGTATTCAGTGTTATTAA
GTGTTGAGGCTCTCACTCCGGTTTGTAGTACACACGGTCTCTCACATTTA
TCTAGTACTGACGTGGCCCTGTAGACGATTGTAAAACTGTTGAGGACATC
AGGTGCGCTCCAGCAAGGCTCGCATGCTCGACTGCAATGAACATAGAACG
GGCAAATCTGGGACAGCGGGTGAAACGCGAAGTGTTCGACTTTTTGAACA
ATCGGGAAAAGGATACTGCAGAATTTAGCCTTCTAAGTATTGCTCTATAG
TCGAGACGTTATTGGCACTTTACTGCACCGCATTCATGTTGTCGAATGTC
CGGAAATTTCGTGTACCCATATTTCACTATACATGTCTGTCCAACGCGTT
TGCGAGAGTTATGCATCCAGCTTCGCTTGGAGAATTTCTCGTGTTGTGCT
CCAAAATTATGATATTATCGTTGAGAGCCTAGCCAGCCGCATTGCTTGGG
TCATGAAGGATTAAGGATAGGTAGTGCGGTGACAACCTCGGACGGCAAGA
GCGTAGCAATGACCAGAGTAACTGTGTGCACTATCAAGTAGGTCGTCTCG
CATGACGAGTACCATAAGTATTTCGTTATGTGTGCTTGCTTGTGCTGTTG
TGAGCGGGAAGGGGTACTGGTCTATCTCTCAAATCCAGTAGGTATGGTGA
ATGGTGAATTGCTTGTTTCTCTAAGTTTCCTACTGCTAGGACTAAAAGAG
AAACACAATGCTTCCAAGGAGTGGCTCTCAAGGAGGCACCACCGGCTCTG
GTGATTGATTCTAAGTTTGATTCTAAGTTTTGGGATACAGTGTGCGGTGC
AGCATTCGTTATTGTGTGTTGCAGATGAATTGGTCATTATCCAGGGTCAG
TCGGAAGCAGCCAAAAAGCTGCTCCGATAATGGGACATGGACGACACTGG
ATATTATCAGGAACGTCAGGAAGATCAGGGAAATGCTCTTCACTTCCGCT
AAATTATGACACAATAGTGTTCACCTCATTCCCCCCCCCTCTCCCACTCC
GAAAAGGCATAACGTGGCCATCAGCAAAACCGAGGGCAAGCAGTGATGTG
TCACGGAGAACCTTAAGCGAAACCCAATCTTTGTGCACCATATGCTGCAT
TCCTGTATTTACCCTCTGCTCTGCCGCTGTCTTTCTTGCCTGTTGGTCTT
TGTCTTTGGCGTTTTAATCTGCTTCACAATCGATCGCGTCCGCCGGGAAG
TGTAGGTGTGGGGAAGACTTGCCTTTTGCTGCGCTATGCCAACGATTCGT
TCTCTCAGACCTTCATTACGACTATCGGGATCGACTTCAAGATCAAAAAC
ATTGACCTGTAAGTGTGTTGACAAGAATAACTGTCGAATGTGTCTCCGTG
TGTAGTCTTGACGAGTACAAGGTGTCCCTAGTTTCTTAGGTTCGCTGGCT
TCCTGCCAAGACTATCGTGTGGTCTGTGGGTCTTCGTACACAATTGAAAT
GAAACTTGAATTCTTGTATCGTCAACAAGATGATACCTAATCTACTCGAT
CGTGAGTCTGTTGGGGGTAAACAGAGGTTGTTTCACCGTGCACAATTTTT
GGAGTCATAATCTCGGAATGTGGAAATGTGCCCAAATTGACTGCAACATG
GAGCAGGACGCTCGGTTGACGGGCACACGCTGACAAGCGCTGCAACGTCG
AGGGGCGCTCTGGGGATTCACTGAAAGTCATTGATCTTGTGTGATGAAGC
CTGGGTGAAATTGGACATGTAGAATATTCGCTGAGACGGGTGCAAAACAG
AAATTCATCGATCGTGTTTATATCACGCTTTCAGTACCCCCCTTTCAACG
TTTCGAGCGCAGTTGAATGCAACGCCAAACCGGGACCCTAGCATGAGTAG
TTTGTCCCAACATCATGGTTTCTCATTTCTTGCTCCGCGCGCGCCGAGGC
TGTTATGAAAAATCAGAATCCCAAAGTGGCTTCGCTTGGAATTAGTGTGT
GGCAGGCAGCGAAGCGGGATGCATTTGCTGTGTAGGGTACACGTACTAAT
TTCCCTGTATATATATATCGTAATTTTTAACTATATCCATTATTAGTATA
TATAGTTTTAAAAGGGCCCACGTTTTGATCTTATAACATCTCCTTTTTTT
AATTACGTTGATGTTGATATGTAGTTATTTTTTTGAATATCTGGGTTAAA
TATTAGAGTTGAATTCGAGAGAGAGCAGTGAATTGAGATATTTCATTTAT
TATTCGTGCGTACTGCTGTACTACGGCGTACACCCCCTCGTACTCTTGGA
AACATGTCGTATCTTGAGTGATAAAGTCAGCGTGTCGCAGGTATGGGGTG
GGTGGTACCCTTTTAACGATGTCCTACACAATGGGCAAGCCGTATCCAAG
AATACTAATACATGGGAAAACGACAGCAATCCTCTGCACAGTGCGGTTTG
TTTTACTACGAAAACATCCGAGTTGGTCGTGCACTGGTATTTTAATACTC
GAATTCCACGAAATTTTGAAAAATGTAGCAAGCCGCACATCTTAAGTGTA
CACGGTTCCTACGAGGTAAGCACCATTCAGTAGATGTTGCCCAGGTGCTC
CAAGTTACGCAGAAAAACTGGAGTTTTTTTTTTTTCCTATGGCCCCTTTT
CTCGAGTATATACCGACCTGTGTCGCGTCGTTTCTAGGAGTAATTACGTC
AGTGCTGGGACATGTAAGAGTGTGTCCCATAACGTTTGCTTGTGACGGGA
ATTGTCTAAGTTTTTTTCGGCAAGGTATGGTGTGGGGTAAAAGAGTGTCT
CACTTCCCTGGTTTGGTTTTCTTTCCGCTTACCCCGTTGTAAAGTTCTTC
TCGTACATGTATGAGATTGAGGCTCACTCGTCGTGGTATGGACGAAACGG
TCGCGGTTGAACGGTAGGCTGCCTATTAAGACAAAGAATACAAGGCACGA
ACAATGACTTGGTAACAACAAACTGTGGAAAGAAGTAACAGGATGCCTCG
ATGTCCTATTTTCATTTTTAAGTATGTGCAAAACCATGGACGGTTTCGCG
TCTAGCGTGGGTATGTTTGTGTGTATGGCGTTTTCAACCTTTTAAATGAA
TAGTCTTACTCGTAAAATTCTTGGTCTTGTTGATGGCAGCGTTCGTATGA
GGATTTGTTTTGTTTCATTTGCACCTATCATACATTTGGTGCATTTGCCC
TCAGCCCCCATTTTCTTCCGCCTTCTTTTAAAAAGAATTCCTACGCTCTT
CCGCTTCCCCACCTCTCGACCTCGCACGTTTGGTCAACAACAAATGTTCC
TCGGCTTGCGTTATTATCCTACCGCCACCATCGCCACCACCACCCCGATG
TGGGGGTTGTATGATGGATACAAACAATTATTCCGAAACAATTGCACTGG
AATTTTTCTTCTTCTGGTTGCAAAAAAAGTGATTCGAAGCGAATCAAGCT
GCAGATCTGGGACACAGCCGGGCAGGAACGTTTCCGCACCATCACGACGT
CCTACTTTCGAGGCGCGCAAGGAATTCTCCTCGTCTACGATGTTACGGAT
AAGAAATCCTTTAACTCTATTCGGAACTGGGTGGGACAGATTCAGCAGGT
CAGCATTACATAATCTTGGAGCAGAGGTTGCTAATGTGCAGCGCATAGGC
GCCGTGAAAGTGCAAGGGGATCTTGGGGAGTGGGAGGGGGTGGGGGGGCG
TTACCTTGACAGTGGTCAGCAGTGGTCCTGTTTATTTGAGCTTCTCAAAA
TTGGTTTGGGGGTGGGGGGGTTTATTCGTGAGGATTTTGGTGTCAGAAGT
CTTCGGGGGGAGTGCGGCAAAAAGGTGGGGGCTGTGTAAGTGTTTGCGGA
GGTCAAGAGGTTGTCGCGTTGGTGTGTGTGACGTCTCCCGGTGCTGCCGG
GGTTGAACCATGTGTATTCTCGTTTGCGGGGGGGGGGGGGACAGTATTTT
GCTCAGTAGGTTGTCCATGTTGAACAACACCCAGAAGTCGTTTCGCAAGA
GTAATTGTTGTTTTAACCCGTTTTCCGTTTTCCGCGGTGGATCGTTGTTG
CGTTGCATGATGTGTGCGTCTGTGTATGTATCTGTTTTTTTTGTTTTACT
CTTGTTTCTTTTTGCTCAGCATGCGGATGTCGCTGTAAACAAGATTTTGA
TCGGCAACAAATGCGACATGGATGAGGACCGGGAGGTGAGAAAAATTGCC
TACGTGAGAACCTTTCTGCTCAGGATTACTTTATCGTTTTTTGTTGCGAG
TCTCCTTACCGTTTTTTGCTGCAAGTGTTACGGGGGATACGCCTCTCAGT
CTTGGGAGGGACATTTATCGAATGCTGCTGTAGCAGCAGCAGCAATATAG
CTGTTGTGACCACAATGATAGGCCGATGCCTTTTGTCGACCTGGATCAGT
ATATTTTCGCGCCGAATGTGTAAATGACGGCGTCAAATGGACGCCGCATA
TCCTCTTCAGGAATGTGGTCACTAAGGGGTGTCCGCTGGTTCAACTAGGA
TGACATGTCGAAAGTATGGTTGTGTTGAGTGTTAGAACCATTTGCTCTGG
CGTGGAGTTGCCCGATGTTGCGCAAGGTAGTGACATCGTGGCGTATGTTT
CGGCTGGAGGAACATGTAGTCTTTGTAGGCTGTGCATTCGGCGGCGCGAT
ACCTTTCTCCATAATTCTCTGGCTGTGATAAAATGATGATCAGGCTGGCC
TTATGGCCGCGTGGGCGGGAGAGGCTGACCATTGATACGCAGCCTCTTAA
TTGTAGCATGTTGATGTACTCAAGACCTGGCTGTAGATAACGGTTGCTGT
TGAATACCACACCCATAAGTGACTTCTTCGACCTGTTTTATTGTGATGCA
TTGTTTCTAAAGAGTTATACAGATAGTAAGTTGTACGCAAGCAAGTGTGT
GCTGTCTAGAAAAACAAGAAAACGCCGAGCGGATTTTCGTATCTTGTATT
TTCGTGATTCGCTTTCGCAGGTTAGCAGAGAGGAAGGTGCGCAGCTGGCG
GCAGAGTATGGCATTCAGTTTTTTGAAACTAGCGCCAAAAATGACGTCAA
TGTGGAAAAGGGGTTTATCACCATCGCAAGGGAGGTGAAGGACAGGCTCA
TGGCGGACGGCCCCAACCAGGGGGCGCGCGTTGCGGGAAACGTGAACCTC
AACGCACAAGCCTCAAAGAAGAAAGCCGGTTGCTGCTGAGATGGCAGTTG
CGGCGGCTTCTTCTTGAGCGTGTCCGGGGGGGGGGGGGGGTCTGATGGTG
ATGTTACACTGTATATGCAGTTTGTAAACGACCTGTTTGCCGCACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1799:7628..14123+

>mRNA_H-paniculata_contig1799.4337.1 ID=mRNA_H-paniculata_contig1799.4337.1|Name=mRNA_H-paniculata_contig1799.4337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig1799:7628..14123+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACGAAATGATAGCCCTTTCGACATGCAGATCAAGCTGCTGATGAT
CGGAGACAGTGATGGCACGAAATGATAGCCCTTTCGACATGCAGATCAAG
CTGCTGATGATCGGAGACAGTGGTGTGGGGAAGACTTGCCTTTTGCTGCG
CTATGCCAACGATTCGTTCTCTCAGACCTTCATTACGACTATCGGGATCG
ACTTCAAGATCAAAAACATTGACCTGTGTGGGGAAGACTTGCCTTTTGCT
GCGCTATGCCAACGATTCGTTCTCTCAGACCTTCATTACGACTATCGGGA
TCGACTTCAAGATCAAAAACATTGACCTTGATTCGAAGCGAATCAAGCTG
CAGATCTGGGACACAGCCGGGCAGGAACGTTTCCGCACCATCACGACGTC
CTACTTTCGAGGCGCGCAAGGAATTCTCCTCGTCTACGATGTTACGGATA
AGAAATCCTTTAACTCTATTCGGAACTGGGTGGGACAGATTCAGCAGTGA
TTCGAAGCGAATCAAGCTGCAGATCTGGGACACAGCCGGGCAGGAACGTT
TCCGCACCATCACGACGTCCTACTTTCGAGGCGCGCAAGGAATTCTCCTC
GTCTACGATGTTACGGATAAGAAATCCTTTAACTCTATTCGGAACTGGGT
GGGACAGATTCAGCAGCATGCGGATGTCGCTGTAAACAAGATTTTGATCG
GCAACAAATGCGACATGGATGAGGACCGGGAGCATGCGGATGTCGCTGTA
AACAAGATTTTGATCGGCAACAAATGCGACATGGATGAGGACCGGGAGGT
TAGCAGAGAGGAAGGTGCGCAGCTGGCGGCAGAGTATGGCATTCAGTTTT
TTGAAACTAGCGCCAAAAATGACGTCAATGTGGAAAAGGGGTTTATCACC
ATCGCAAGGGAGGTGAAGGACAGGCTCATGGCGGACGGCCCCAACCAGGG
GGCGCGCGTTGCGGGAAACGTGAACCTCAACGCACAAGCCTCAAAGAAGA
AAGCCGGTTGCTGCTGAGTTAGCAGAGAGGAAGGTGCGCAGCTGGCGGCA
GAGTATGGCATTCAGTTTTTTGAAACTAGCGCCAAAAATGACGTCAATGT
GGAAAAGGGGTTTATCACCATCGCAAGGGAGGTGAAGGACAGGCTCATGG
CGGACGGCCCCAACCAGGGGGCGCGCGTTGCGGGAAACGTGAACCTCAAC
GCACAAGCCTCAAAGAAGAAAGCCGGTTGCTGCTGA
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