mRNA_H-paniculata_contig1798.4332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1798.4332.1
Unique NamemRNA_H-paniculata_contig1798.4332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: D7FRX5_ECTSI (Geranylgeranyl diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRX5_ECTSI)

HSP 1 Score: 794 bits (2051), Expect = 1.970e-282
Identity = 401/476 (84.24%), Postives = 433/476 (90.97%), Query Frame = 1
Query:  226 MAPRRSIATAAVVLSGCAGCEAWVVSPASRGFTGQRVAMPA--TSSVSGLDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            MAPRR+ ATAA VL+GCAGC AWV  PA+RGFTGQRVA  A  +SS SG+ MKYKVAVVGGGPSG+CAAE+LA  DDV+V LFERKMDNAKPCGGAIPLCM+DEFDLP  IIDRKVR+MKMISPTNREVDIGQTL  DEYIGMVRREVMDGFMR+RAI+ GA A+NGLV DI+VPADKDSGK+KI F     G +K G   + EFD IIGSDGANSRVAKAMDAG YNYAIAFQERIKIS++KM+FY++MAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRP IKDYQDAIRKRAG+KI GGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEA+V C+++TG+LP E Q+K TYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVED+KLLFGT GSL+RGQALAPPDV+ SNPVESLKRL
Sbjct:    1 MAPRRNAATAAAVLAGCAGCSAWVA-PAARGFTGQRVAPAAATSSSPSGMKMKYKVAVVGGGPSGSCAAEILADCDDVDVTLFERKMDNAKPCGGAIPLCMIDEFDLPTSIIDRKVRKMKMISPTNREVDIGQTLGDDEYIGMVRREVMDGFMRDRAIEKGAHAINGLVNDIDVPADKDSGKYKIHFARYEKGSRK-GVQDSEEFDLIIGSDGANSRVAKAMDAGAYNYAIAFQERIKISEKKMEFYEEMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPKIKDYQDAIRKRAGEKIEGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAVVQCIKQTGKLPTEAQLKKTYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDLKLLFGTFGSLMRGQALAPPDVTFSNPVESLKRL 474          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A7S2V8F2_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8F2_9STRA)

HSP 1 Score: 665 bits (1716), Expect = 1.220e-231
Identity = 328/427 (76.81%), Postives = 373/427 (87.35%), Query Frame = 1
Query:  367 LDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            L MKY VAV+GGGPSG+CAAE+ AK  +++ VL ERKMDNAKPCGGAIPLCM+DEFDLP +IIDR+VRRMKMISP++REVDIGQTLA  EYIGM RRE++DG++R+RA++ GA A+NGLVTDIE+P     GK+ I+ Q    G KK+G P  +E D +IG+DGANSR+AKAMDAG+YNYAIAFQERI+ISDE+M FY+D+AEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRP IK+YQ+AIR RAGDKIAGGKIIK+EAHPIPE+ RPRRVV R  LVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIV  ++   +LP E+++K TY+KDYDK Y PTY VLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYK+VQGNNPVEDIKLLF TVG+L RG ALA PD   SNPVESLKRL
Sbjct:   50 LQMKYTVAVIGGGPSGSCAAEIFAKEKNIDTVLIERKMDNAKPCGGAIPLCMIDEFDLPTNIIDRQVRRMKMISPSDREVDIGQTLAPGEYIGMTRREILDGYLRDRAVEYGAKAINGLVTDIEIPTTP-GGKYIINLQN-YEGSKKAGTPEKIEADIVIGADGANSRLAKAMDAGEYNYAIAFQERIRISDEQMKFYEDLAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPGIKEYQNAIRARAGDKIAGGKIIKVEAHPIPEHMRPRRVVDRAVLVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVKLMKNGSRLPTEQEIKDTYIKDYDKAYGPTYTVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFTTVGALFRGNALASPDKEFSNPVESLKRL 474          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A835YKR3_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR3_9STRA)

HSP 1 Score: 664 bits (1714), Expect = 2.540e-231
Identity = 344/477 (72.12%), Postives = 390/477 (81.76%), Query Frame = 1
Query:  226 MAPRRSIATAAVVLSGCAGCEAWVVSPASRGFTGQRVAMPA--TSSVSGLDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTG-QLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            MAP+R   T AV L+            A   F GQRVA P   T S + LDMK+KVAVVGGGPSGACAAE+ A+  DVE V+ ERKMDNAKPCGGAIPLCMVDEF LP  +IDRKVR+MKMISPTNREVDIG TL  DEYIGMVRRE++DG++R+RAI+ GAT +NGLVT I+VP    +G++KI  Q    G +K G    ME D IIG+DGANSRVAKAMDAG YNYAIAFQER++++ E+M FY+++AEMYVGDDVSPDFYGWVFPKYDHV VGTGTVVNRPAI +YQ A+R+RAG KI GG IIKIEAHPIPE+YRPRRVVGRM LVGDAAGYVTKCSGEGIYFAAKSGRMAAE IV  ++  G +LP E Q+K TY+K YD+ YKPTY+VLD+LQ++FYSNNAAREAFVE+CESEYVQKVTFDSYLYK+VQGNNPVEDIKLLF TVGSL RG ALAPPD   SNPVESLKRL
Sbjct:    1 MAPQRYNRTKAVALAVVGAAATANAFQAKGVFGGQRVATPRSLTRSAAHLDMKFKVAVVGGGPSGACAAEIFAQYPDVETVIIERKMDNAKPCGGAIPLCMVDEFKLPEKLIDRKVRKMKMISPTNREVDIGTTLKPDEYIGMVRREILDGYLRSRAIEYGATPINGLVTKIDVPQGH-NGRYKIHLQN-YEGAQKVGTKEEMEVDLIIGADGANSRVAKAMDAGDYNYAIAFQERVRVNPEQMKFYEELAEMYVGDDVSPDFYGWVFPKYDHVAVGTGTVVNRPAIMEYQKAMRERAGAKIEGGTIIKIEAHPIPEHYRPRRVVGRMVLVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVAVMKANGGKLPTEAQIKDTYIKKYDQAYKPTYIVLDLLQRIFYSNNAAREAFVEMCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFNTVGSLFRGAALAPPDKPYSNPVESLKRL 475          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A835YXG4_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG4_9STRA)

HSP 1 Score: 663 bits (1710), Expect = 9.890e-231
Identity = 341/476 (71.64%), Postives = 390/476 (81.93%), Query Frame = 1
Query:  226 MAPRRSIATAAVVLSGCAGCEAWVVSPASRGFTGQRV-AMPATSSVSGLDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVR-KTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            MAP     + AV L+      A   + A   F G ++ A  +  S   +DMKY+VAVVGGGPSGACAAE+ A+  DVE V+FERKMDNAKPCGGAIPLCMVDEF LP  +IDRKVRRMKMISPTNREVDIG TL  +EYIGMVRRE++DG++R RAI+ GAT +NGLVT+IEVP +  +GK+KI +Q    G KK G    ME D I+G+DGANSRVAKAMDAG+YNYAIAFQERI+++DE+M  Y+++AEMYVGDDVSPDFYGWVFPKYDHV VGTGTV+NRPAI++YQ A+R RAG KI GGKIIKIEAHPIPE+YRPRRVVGRM LVGDAAGYVTKCSGEGIYFAAKSGRMAAE IV  ++   G LP E Q+K TY+  YDK YKPTY+VLD+LQ+VFYSNN AREAFVE+C+SEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGT+GSLIRG A APPD   SNPVESLKRL
Sbjct:    1 MAPHSCNRSRAVALAFATAGVASTHAFAPSAFAGSKMSARHSRRSAGCMDMKYRVAVVGGGPSGACAAEIFAQYGDVETVIFERKMDNAKPCGGAIPLCMVDEFKLPETLIDRKVRRMKMISPTNREVDIGDTLKPNEYIGMVRREILDGYLRERAIEFGATPINGLVTNIEVP-EGHNGKYKIVYQN-YDGAKKVGTKEEMEVDLIVGADGANSRVAKAMDAGEYNYAIAFQERIRVNDEQMKVYEELAEMYVGDDVSPDFYGWVFPKYDHVAVGTGTVINRPAIQEYQKAMRARAGAKIEGGKIIKIEAHPIPEHYRPRRVVGRMVLVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVALMKANNGALPTESQIKDTYIAKYDKAYKPTYIVLDLLQRVFYSNNGAREAFVEMCDSEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTIGSLIRGAATAPPDRPFSNPVESLKRL 474          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A4D9DCN1_9STRA (Geranylgeranyl diphosphate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCN1_9STRA)

HSP 1 Score: 657 bits (1694), Expect = 2.430e-228
Identity = 324/427 (75.88%), Postives = 374/427 (87.59%), Query Frame = 1
Query:  367 LDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            +DMKY+V VVGGGPSG+CAAE LAK  ++E VL ERKMDNAKPCGGAIPLCMV EFDLP +IIDRKVR+MKMISPTNREVDIGQTL  +EYIGM RREV+DGF+R RA++ GATA+NGLVT +E+P  +  G++KI +     G   +G P T+E D IIG+DGANSRVAKA+DAG+YNYAIAFQERIKIS+EKM+FY+++AEMYVGDDVSPDFY WVFPKYDHVGVGTGTV+NRPAIK YQ AIR RAGDKIA GKIIK+EAHPIPE+ RPRRVVGR+AL+GDAAGYVTKCSGEGIYFAAKSGRMAA++I + +    +LP EK++K TY+KDYD+LY PTY VLDILQ+VFYS+NAAREAFVELCESEYVQKVTFDSYLYK+VQGNNPVEDIKLLF T+G+L+RG ALAP D  + NPVESLKRL
Sbjct:   47 MDMKYRVVVVGGGPSGSCAAEELAKDKNIETVLLERKMDNAKPCGGAIPLCMVSEFDLPAEIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFLRQRAVNTGATAINGLVTKVELPTTE-GGRYKIHYSNFEKGTGAAGIPETIEADVIIGADGANSRVAKAIDAGEYNYAIAFQERIKISEEKMNFYEELAEMYVGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIANGKIIKVEAHPIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGRMAAQSIRELMAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQRVFYSSNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALMRGNALAPRDKPVYNPVESLKRL 472          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A7S2WEE7_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEE7_9STRA)

HSP 1 Score: 652 bits (1683), Expect = 1.170e-226
Identity = 323/434 (74.42%), Postives = 372/434 (85.71%), Query Frame = 1
Query:  346 ATSSVSGLDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            A S+ + ++ KYKVAV+GGGPSGACAAE+ A+  ++E VL ERKMDN KPCGGAIPLCMVDEF LP  IIDRKVR+MKMISPTNREVDIGQTLA +EYIGM RREV+D ++R+RA++ GATA+NGLVT ++VP D   GK+KI +     G K+ G   T++ D I+G+DGANSRVAKA+ AG+YNYAIAFQERIKI DEKM FY+D+AEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRP IKDYQ AIR RAG+KIAGGKIIK+EAHPIPE+ RPRRVVGR+ALVGDAAGYVTKCSGEGIYFAAKSGRMAAE+I   +    +LP EK++K TY++DYD+ Y PTY VLDILQKVFYS+N AREAFV++C+SEYVQKVTFDSYLYKKVQGNNPVEDIKLL GT+GSLIRG A+APPD    NP ESLKRL
Sbjct:   42 AVSTRAVVEAKYKVAVIGGGPSGACAAEIFAQEPNIETVLIERKMDNCKPCGGAIPLCMVDEFKLPDSIIDRKVRKMKMISPTNREVDIGQTLAEEEYIGMTRREVLDAYLRDRAVEYGATAINGLVTQVDVP-DTADGKYKIHYANYA-GDKRVGTAETLDVDLIVGADGANSRVAKAIGAGEYNYAIAFQERIKIDDEKMAFYEDLAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPGIKDYQKAIRDRAGEKIAGGKIIKVEAHPIPEHMRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMAAESICKLMEGGSRLPTEKEIKDTYIQDYDRAYGPTYTVLDILQKVFYSSNGAREAFVDMCDSEYVQKVTFDSYLYKKVQGNNPVEDIKLLIGTIGSLIRGSAIAPPDKPFYNPEESLKRL 473          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A7S2APY9_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APY9_9STRA)

HSP 1 Score: 651 bits (1679), Expect = 4.210e-226
Identity = 323/428 (75.47%), Postives = 371/428 (86.68%), Query Frame = 1
Query:  367 LDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVP-ADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            ++ KY+VAVVGGGPSG+CAAEV A++ DV+  + ERKMDN KPCGGAIPLCMVDEF+LP DIIDRKVR+MKMISPTNREVDIGQTL  DEYIGM+RREVMDG++R+RAI+ GA  +NGLVT++EVP AD+D+   K +      G K+ G P  +E D +IG+DGANSRVAKA+DAG+YNYAIAFQERIKI DEKM FY+++AEMYVGDDVSPDFYGWVFPKYDHVGVGTGTV+NRP IKDYQ AIR+RAG KI GGKIIK+EAHPIPE+ RPRRVVGR ALVGDAAGYVTKCSGEGIYFAAKSGRMAAE I   ++   +LP E+++K TY+KDYD+ Y PTY VLDILQKVFYSNN AREAFVELC+SEYVQKVTFDSYLYKKVQGN+P+EDIKLL  T+GSLIRG A+A PDV I+NPVESLKRL
Sbjct:   46 VEAKYRVAVVGGGPSGSCAAEVFAQNKDVDTWIIERKMDNCKPCGGAIPLCMVDEFNLPADIIDRKVRKMKMISPTNREVDIGQTLKPDEYIGMLRREVMDGYLRDRAIEFGAQPINGLVTEVEVPTADRDTYLIKYA---NYAGNKRVGTPEVLEVDIVIGADGANSRVAKAIDAGEYNYAIAFQERIKIDDEKMAFYEELAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVINRPGIKDYQKAIRERAGAKIEGGKIIKVEAHPIPEHMRPRRVVGRAALVGDAAGYVTKCSGEGIYFAAKSGRMAAENICRLMQGGTRLPTEQEIKQTYIKDYDRAYGPTYTVLDILQKVFYSNNGAREAFVELCDSEYVQKVTFDSYLYKKVQGNSPIEDIKLLGNTIGSLIRGNAIAQPDVPINNPVESLKRL 470          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A8J5XCC8_DIALT (Geranylgeranyl diphosphate reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCC8_DIALT)

HSP 1 Score: 642 bits (1657), Expect = 6.480e-223
Identity = 319/446 (71.52%), Postives = 375/446 (84.08%), Query Frame = 1
Query:  316 GFTGQRVAMPATSSVSGLDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKD--SGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            G    RVA PA++  + +  K +VAVVGGGPSG+CAAE+LA+  +VE  L ERKMDNAKPCGGAIPLCMVDEF LP +IIDRKVR+MKMISP+NREVDIGQTL  +EYIGM RRE+MDG++R RA   GA  +NGLVT +EVP D     G++K+ + E    G  +G+P  +E D +IG+DGANSRVAKA+DAG+YNYAIAFQERIKISDEKM FY+D+AEMYVGDDVSPDFYGWVFPKYDHVGVGTGTV NRPAIK+YQDA+R RAGDKIAGGKIIK+EAHPIPE+ RPRRVVGR  LVGDAAGYVTKCSGEGIYFAAKSGRMA EA+V  ++   ++P E ++ A Y++ YDK Y PTYLVLD+LQKVFY++N AREAFVE+CESEYVQ+VTF+SYLYKKVQGNNP+ED+KLLF T+GSL+RG A+A PD + SNPVESLKRL
Sbjct:   17 GVRASRVARPASAPRADIAAKIRVAVVGGGPSGSCAAEILAQEPNVETYLIERKMDNAKPCGGAIPLCMVDEFQLPPEIIDRKVRKMKMISPSNREVDIGQTLEPNEYIGMCRREIMDGYLRERAQKKGAITINGLVTKVEVPEDATPTGGRYKLHYAEYAGEGA-AGKPGFIEVDVVIGADGANSRVAKAIDAGEYNYAIAFQERIKISDEKMAFYEDLAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVTNRPAIKEYQDAMRTRAGDKIAGGKIIKVEAHPIPEHPRPRRVVGRALLVGDAAGYVTKCSGEGIYFAAKSGRMAGEALVRLMQGGSRIPSESEIIAEYIRPYDKAYGPTYLVLDLLQKVFYNSNGAREAFVEMCESEYVQRVTFNSYLYKKVQGNNPIEDVKLLFNTIGSLVRGSAVAAPDKTFSNPVESLKRL 461          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A7R9YFU9_9STRA (Geranylgeranyl diphosphate reductase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU9_9STRA)

HSP 1 Score: 644 bits (1661), Expect = 6.840e-223
Identity = 320/427 (74.94%), Postives = 363/427 (85.01%), Query Frame = 1
Query:  367 LDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            +  KY VAV+GGGP+GACAAE+ A+   ++  +FERKMDNAKPCGGAIPLCMVDEFDLP DIIDRKVRRMKMISPTNREVDIGQTL   EYIGM RRE++DG++R+RAI+ GATAVN LVT+I+ P +  +GK+ + +QE   GGK  G    ME D +IG+DGANSRVAKA+ AG+YNYAIAFQERIKI+DE+M FY+++AEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIK+YQ AIR RAG KIAGGKIIK+EAHPIPE+YRPRRV GR  LVGDAAGYVTKCSGEGIYFAAKSGRMA EA+V  +    +LP E+Q+K  YLK YDK Y PTY VLD+LQKVFY+NNAAREAFVE+CES YVQ VTF+SYLYKKVQGNNPV DIKLLF TVGSL RG ALAP D + SNPVESLKRL
Sbjct:   76 MTAKYSVAVIGGGPAGACAAEICAEEKGIDTFIFERKMDNAKPCGGAIPLCMVDEFDLPSDIIDRKVRRMKMISPTNREVDIGQTLKPHEYIGMTRREILDGYLRDRAIEKGATAVNALVTNIKTPEETGNGKYLLQYQE-YEGGKSVGVAKEMEVDVLIGADGANSRVAKAIGAGEYNYAIAFQERIKINDEQMAFYEELAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKEYQKAIRDRAGAKIAGGKIIKVEAHPIPEHYRPRRVKGRAMLVGDAAGYVTKCSGEGIYFAAKSGRMAGEAVVAAMAGGARLPTEQQIKDLYLKPYDKAYGPTYTVLDLLQKVFYTNNAAREAFVEMCESTYVQDVTFNSYLYKKVQGNNPVSDIKLLFTTVGSLFRGNALAPTDKAFSNPVESLKRL 501          
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Match: A0A7S1XU03_9STRA (Geranylgeranyl diphosphate reductase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU03_9STRA)

HSP 1 Score: 635 bits (1639), Expect = 4.750e-220
Identity = 318/444 (71.62%), Postives = 363/444 (81.76%), Query Frame = 1
Query:  316 GFTGQRVAMPATSSVSGLDMKYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMVDEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGFMRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPSTMEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKIAGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVFYSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGSLIRGQALAPPDVSISNPVESLKRL 1647
            G  G R+A  A      ++MKY VAV+GGGP+GACAA+ LA+   ++  +FERK DNAKPCGGAIPLCMVDEFDLP DIIDRKVR+MKMISPTNREVDIGQTL  +EYIGM RRE++DGF+R RAI+ GA  VNGLVT I+ P +  +GK+ + +QE     K  G    ME D +IG+DGANSRVA A+ AG+YN+AIAFQERI+I+DE+M FY+++AEMYVGDDVSPDFYGWVFPKYDHVGVGTGTV+NRPAIKDYQ AIR RAG KIAGGKIIK+EAHPIPE+YRP+R  GR  LVGDAAGYVTKCSGEGIYFAAKSGRMA EA+V  ++   +LP EK ++  YLK YDKLY  TY VLDILQKVFYSNN AREAFVE+CESEYVQKVTFDSYLYKKVQGNNPVEDIKLLF TVGSL RG ALA PD   SNP ESL R+
Sbjct:   30 GLNGARMARQAQRQT--MEMKYSVAVIGGGPAGACAADALAECKGIDTFIFERKFDNAKPCGGAIPLCMVDEFDLPEDIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREILDGFLRERAIEKGAVGVNGLVTTIKTPEETGNGKYFLEYQEYEKN-KSVGVRKQMEVDVLIGADGANSRVASAIGAGEYNFAIAFQERIRITDEQMKFYEELAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVINRPAIKDYQKAIRDRAGAKIAGGKIIKVEAHPIPEHYRPKRAAGRAMLVGDAAGYVTKCSGEGIYFAAKSGRMAGEAVVKAMKGGSRLPTEKDIRDLYLKPYDKLYGATYTVLDILQKVFYSNNGAREAFVEMCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFTTVGSLFRGNALAEPDREFSNPKESLNRI 470          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1798.4332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRX5_ECTSI1.970e-28284.24Geranylgeranyl diphosphate reductase n=2 Tax=Ectoc... [more]
A0A7S2V8F2_9STRA1.220e-23176.81Geranylgeranyl diphosphate reductase n=1 Tax=Fibro... [more]
A0A835YKR3_9STRA2.540e-23172.12Geranylgeranyl diphosphate reductase n=1 Tax=Tribo... [more]
A0A835YXG4_9STRA9.890e-23171.64Geranylgeranyl diphosphate reductase n=1 Tax=Tribo... [more]
A0A4D9DCN1_9STRA2.430e-22875.88Geranylgeranyl diphosphate reductase n=2 Tax=Monod... [more]
A0A7S2WEE7_9STRA1.170e-22674.42Geranylgeranyl diphosphate reductase n=1 Tax=Rhizo... [more]
A0A7S2APY9_9STRA4.210e-22675.47Geranylgeranyl diphosphate reductase n=1 Tax=Dicty... [more]
A0A8J5XCC8_DIALT6.480e-22371.52Geranylgeranyl diphosphate reductase n=1 Tax=Diacr... [more]
A0A7R9YFU9_9STRA6.840e-22374.94Geranylgeranyl diphosphate reductase n=1 Tax=Pingu... [more]
A0A7S1XU03_9STRA4.750e-22071.62Geranylgeranyl diphosphate reductase n=2 Tax=Phaeo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1798contigH-paniculata_contig1798:13664..21271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score797.7
Seed ortholog evalue2.9e-228
Seed eggNOG ortholog2880.D7FRX5
Preferred nameGgh
KEGG rclassRC00212,RC00522,RC01823
KEGG koko:K10960
KEGG ReactionR02063,R08754,R08755,R08756,R11226,R11518
KEGG Pathwayko00860,ko00900,ko01100,ko01110,map00860,map00900,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006725,GO:0006766,GO:0006775,GO:0006778,GO:0006779,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009110,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0010189,GO:0015994,GO:0015995,GO:0016020,GO:0016114,GO:0016491,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0033385,GO:0033519,GO:0033521,GO:0034357,GO:0034641,GO:0042360,GO:0042362,GO:0042440,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045550,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055035,GO:0055114,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.geranylgeranyl diphosphate reductase activity
EggNOG OGs2QQWY@2759,COG0644@1
Ec32 ortholog descriptionGeranylgeranyl reductase
Ec32 orthologEc-03_003520.1
EC1.3.1.111,1.3.1.83
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons10
Model size2410
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1798.4332.1prot_H-paniculata_contig1798.4332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1798 14424..21046 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.0340705-UTR-H-paniculata_contig1798:13663..144231622929403.0340705-UTR-H-paniculata_contig1798:13663..14423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1798 13664..14423 -
1691480845.7715254-UTR-H-paniculata_contig1798:13663..144231691480845.7715254-UTR-H-paniculata_contig1798:13663..14423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1798 13664..14423 -
1622929403.214148-UTR-H-paniculata_contig1798:21046..212711622929403.214148-UTR-H-paniculata_contig1798:21046..21271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1798 21047..21271 -
1691480845.9010367-UTR-H-paniculata_contig1798:21046..212711691480845.9010367-UTR-H-paniculata_contig1798:21046..21271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1798 21047..21271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.0517333-CDS-H-paniculata_contig1798:14423..145551622929403.0517333-CDS-H-paniculata_contig1798:14423..14555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 14424..14555 -
1691480845.784765-CDS-H-paniculata_contig1798:14423..145551691480845.784765-CDS-H-paniculata_contig1798:14423..14555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 14424..14555 -
1622929403.0725362-CDS-H-paniculata_contig1798:14918..150171622929403.0725362-CDS-H-paniculata_contig1798:14918..15017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 14919..15017 -
1691480845.7985046-CDS-H-paniculata_contig1798:14918..150171691480845.7985046-CDS-H-paniculata_contig1798:14918..15017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 14919..15017 -
1622929403.0890636-CDS-H-paniculata_contig1798:15162..153551622929403.0890636-CDS-H-paniculata_contig1798:15162..15355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 15163..15355 -
1691480845.8099544-CDS-H-paniculata_contig1798:15162..153551691480845.8099544-CDS-H-paniculata_contig1798:15162..15355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 15163..15355 -
1622929403.1017368-CDS-H-paniculata_contig1798:16005..161391622929403.1017368-CDS-H-paniculata_contig1798:16005..16139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 16006..16139 -
1691480845.818627-CDS-H-paniculata_contig1798:16005..161391691480845.818627-CDS-H-paniculata_contig1798:16005..16139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 16006..16139 -
1622929403.1122406-CDS-H-paniculata_contig1798:16395..165241622929403.1122406-CDS-H-paniculata_contig1798:16395..16524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 16396..16524 -
1691480845.8274753-CDS-H-paniculata_contig1798:16395..165241691480845.8274753-CDS-H-paniculata_contig1798:16395..16524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 16396..16524 -
1622929403.122703-CDS-H-paniculata_contig1798:16738..168221622929403.122703-CDS-H-paniculata_contig1798:16738..16822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 16739..16822 -
1691480845.838806-CDS-H-paniculata_contig1798:16738..168221691480845.838806-CDS-H-paniculata_contig1798:16738..16822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 16739..16822 -
1622929403.1344006-CDS-H-paniculata_contig1798:17221..174011622929403.1344006-CDS-H-paniculata_contig1798:17221..17401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 17222..17401 -
1691480845.8483307-CDS-H-paniculata_contig1798:17221..174011691480845.8483307-CDS-H-paniculata_contig1798:17221..17401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 17222..17401 -
1622929403.1500683-CDS-H-paniculata_contig1798:17755..178901622929403.1500683-CDS-H-paniculata_contig1798:17755..17890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 17756..17890 -
1691480845.8580258-CDS-H-paniculata_contig1798:17755..178901691480845.8580258-CDS-H-paniculata_contig1798:17755..17890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 17756..17890 -
1622929403.164434-CDS-H-paniculata_contig1798:18598..187981622929403.164434-CDS-H-paniculata_contig1798:18598..18798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 18599..18798 -
1691480845.874802-CDS-H-paniculata_contig1798:18598..187981691480845.874802-CDS-H-paniculata_contig1798:18598..18798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 18599..18798 -
1622929403.2020807-CDS-H-paniculata_contig1798:20907..210461622929403.2020807-CDS-H-paniculata_contig1798:20907..21046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 20908..21046 -
1691480845.8876874-CDS-H-paniculata_contig1798:20907..210461691480845.8876874-CDS-H-paniculata_contig1798:20907..21046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1798 20908..21046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1798.4332.1

>prot_H-paniculata_contig1798.4332.1 ID=prot_H-paniculata_contig1798.4332.1|Name=mRNA_H-paniculata_contig1798.4332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=475bp
MAPRRSIATAAVVLSGCAGCEAWVVSPASRGFTGQRVAMPATSSVSGLDM
KYKVAVVGGGPSGACAAEVLAKSDDVEVVLFERKMDNAKPCGGAIPLCMV
DEFDLPVDIIDRKVRRMKMISPTNREVDIGQTLAADEYIGMVRREVMDGF
MRNRAIDLGATAVNGLVTDIEVPADKDSGKFKISFQEAVPGGKKSGEPST
MEFDFIIGSDGANSRVAKAMDAGKYNYAIAFQERIKISDEKMDFYKDMAE
MYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKDYQDAIRKRAGDKI
AGGKIIKIEAHPIPENYRPRRVVGRMALVGDAAGYVTKCSGEGIYFAAKS
GRMAAEAIVDCVRKTGQLPKEKQMKATYLKDYDKLYKPTYLVLDILQKVF
YSNNAAREAFVELCESEYVQKVTFDSYLYKKVQGNNPVEDIKLLFGTVGS
LIRGQALAPPDVSISNPVESLKRL*
back to top

mRNA from alignment at H-paniculata_contig1798:13664..21271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1798.4332.1 ID=mRNA_H-paniculata_contig1798.4332.1|Name=mRNA_H-paniculata_contig1798.4332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7608bp|location=Sequence derived from alignment at H-paniculata_contig1798:13664..21271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTTTTGTCCCACTGCAAACGCCTCATTATCTGTCCCCTCCACCCGGC CTGTCCCTCGCTACAGCTTTTCTTTTCATCGACCAAGTTCTGTCAGCTGT ATTCCGCACATCCTGCCGCTTACAGCTCAAGTACAGACTGTGTCACCGGC AAGTCAGAGGCCGTAGGTACCAGAGGTTGTAGCCCCCGTAGGTCTTCACG TCGTTGTCCTCGTCTCTTTTTTAAGATGGCGCCACGCCGTAGCATTGCCA CGGCGGCTGTAGTTTTGAGCGGCTGTGCGGGATGTGAGGCTTGGGTTGTC TCGCCTGCGTCACGAGGCTTCACAGGGCAGCGGGTAGCGATGCCGGCCAC ATCTTCAGTGTCAGGTTAGGCCATAAATGCGTCCATGTTATGCGCTTGTT GTCGGAGTGGCTTTCCTGGCTTCTGTGTTGATATGCGGGTCGTACTGCCC TTTCGATCTCGCCCGTTGAGCAAGTGACTGTGCAGGAAAAAATGCGCATG TGCCCTCGGCCTAAGCCGTTGCTGTGCGTGTCACGATTACCCCTAAAAAC GAACCATTTCACTGACAGCCAGAGCCTGCCAGGTCTGGTGTTTCTCGAGC GGCGATATGCCCTGTTCGCGTCAACGTGCTACCTGTAACGTCTGGTGTAA TTGTACTTTAGCTGTGCTTTTTAGATACATTTCGAGGCGAGTTACATGAA GATTCCTGTCCTCTGCCTACCTCGCATGCACGTGTTGAATGTAGGGTGGG TTGTGAGGTCGGTGTTCCTGCTTGGTGGCACAAGAAGTTGTTGTGAACTC TACAACGCCTCGAGACACGTGTACATACTGTCCCAACCCATGACATGACA CTGAGAAAGGATCCTTTTTATATCGATAGGATACCTTGTGCGTGCTGCAT ACGACTTGTGTCATCACTTTTCTGGTTTTTGTCTGTTGTGGAAATGCCTC AGCCAGAGCATGAATGCGCCAGTGTTTTGGAGTATGTATCATTCTTTTTT GGCGGGGTGTTTGTATATGATCATGTGTAGATATCGAAAGCAATTTTGTC CATGGGCAGGAAGACTATCAGTCAAGCGTACGTCTTTCCCGATTGTTGTG GTGTCTTCAGGTTCCAGAATTTCAGTGGTCGACTGACACAGTCACTTTTG AGGTATGTGTAGGAATTGCGTCCACACGCCAAACTGTTTGCACAGACGGT GTGTTGGCAGTTGGGTGGAAGTTTGTACTTCTTTGATGAAAAATAAATAA AAACGGGCACTCGGAAACTCACCAGCAATTATCCATCATGATATAAACGC GTTGATATATGGTCATGTCTCATGATGCAGAATTGCGTCGGGTGAGCCTA CAGCCTTCCTCTGGAGATTTGAGACAGGTTGACCTGTACTACCCTCGACG TGGCAAACATTCCGCTATATGTTGGCATTGTTGTCGCCAAAACCCACCGC CGCATTGCTGAGATTCGATAGGCAGCTATTGATGAATTGTTCTGTACTCA TTTTTGCCTGTCGACCTTTAAGTGGCGAAAGTAGGGGCAACGATATCATG CGTAATGGTTTTATTGGTAGCACTTGAGTAAACTGACGGTCTGATTTGAA TAGGAGCAGACGTTCAGTACAGCTGTGTTCCTGGCTATGAGTCACTAGCG GCGACTTTTGGGTGGTGTAGTTGAATGTCGAGGCAGCACTGAGGTGGCAC ATTGATTAGTTCTGTCGATTCCTTGCATGTCATGTTTCAAATGGATTCCT GAAAAAGCTTTGGTGCTACGAGTCCTGGTTTTGGGCCATGTACTATGAGG TATCATGTGATCTGTCTTTCCCCGAAGGTTTCCCTGTGCGCCTTGTGTTC GATATATTGGGACTGAACGTATCTCACTTTCACCCAATACAACACGCGAT ATGTCCTTGTTGAGGAAAAACTGTCGTGGCAGTGTGCTCCTAAAAAGTCA GCGTAATGAGCGCCTCCCGTCATGGATATTTTGAGATATCGCCAACGCAC CTTCCCCAAATATGTTTTATGGTTGTTTGATCTAAATCATGATGTACGAC TCAATTCACTCAACACGTGATGAAGCCATGTCCAATTGTGGTGTTTTTGC TAACAAGGCAGGTATTTTTGTAAGTTGTGCAACTACCACAGCGGTGGACA CTCACCAGGATGCTCACACAAACGACTTGACAGGTCATGGGCATTCGCCA CAAACCTCCTTTACCTCAAACGTGGCAGATGCCCCTCTGGTATGTACCAT TCCATTTTGGTACCATTAACTACTGCGTTGGGTGTCAAATATGTCATGTA GGCTATTTTGATTTGCCATGCTCAGCAATCGAGGTGGGCGAAAACTCGAG ACGATGCCACACAAATGGGCATCTGAAAACACGTTGAGCTTTTCCACGTT ATTCGATCAGAATAGATGTAGCCCAATACTCTTGATTTGGTACTGACGGG ATGTGTTATTTATTCATGTACAGGACTTGACATGAAGTACAAGGTGGCTG TGGTGGGGGGCGGGCCTTCTGGTGCTTGTGCGGCGGAAGTCTTGGCGAAA AGTGACGACGTTGAAGTTGTGCTGTTTGAGCGAAAGATGGATAACGCCAA GCCATGTGGGGGTGCCATCCCTCTGTGCATGGTCGATGAGTTCGACTTGC CAGTTGACATTATTGACCGCAAGGTAAGAATACATCGAGATACGCCGACT CGGTTTCAGATACTACTGTAGCCATGGCTAGAGCTTTTAAGGGAATCTTC GCTAAGTTTAAGTAGGGCGTCGGAAACATGAAATTCGGTTTAAATCTCAG TCGGTTAGTTCGAGCTATGAACTTGGTCAGTCCTTGACCAAAAGATCAAC TGCAGGTTGTGTTTCATGACTGTGTCAGCACACATTCGAAGCATATCAAA ATCCTACTTAGAAAAGGACACCCATGTCGGACGTCGGATTTGTGGTTTGT TGTCAAGGTCGGTCATGAGTGCTCTGCTCCAGTCTCGGTAGTGTGCAGGT TGTAATCGTATTTTTGCTTATTTTCTTCCTGGATCATGGTTGCCCCAGCG GACAGAGTCTTGGCTATTTTTATGACATGCTTGATGCAATAGATCTAACT GGAGTCACTTTTGAAATCATTTGAATTCCCCAAGAAAAGCTCGGTCCATG GAAGCATCGAAGTATGGTACCACATGGATCGGTTGAACCGGAGTAAGATG CCGATATGAGGACGTATCAGTGCTGGTCATGTGCTTCCATGTCATCTCAT GGCATTCCGATGTGCACCATGTGCTGTACGTGGTCCGAACAAGGTGCCAT TCGTGATGACCCTAGTATAACGGATAGGCGGGATATGTAAGTGGACAATC CTTCTTCGCACACGGTTTTCGCTTTTCCCAGGTCCGGCGGATGAAAATGA TATCGCCGACAAATCGCGAGGTGGATATTGGTCAGACCCTCGCAGCAGAT GAGTATATTGGCATGGTTCGGCGAGAGGTGATGGACGGCTTCATGCGGAA CAGGGCAATCGACTTGGTGAGTTCCGTGTGTTGGTGAAAAAGAAACAGGA TTTTAGAAGTGATGTGTAACTAGGATCTTGGAGATGTGAGACAAATGAAT TTTCGATTCCATTCTTGGCGATGGCACAGGGGGCATCTCCTCTTTCGTAC GCGGGCGGGAATGACGGCATGCTGGAGGAGAACTTAATTTTCGCGTACAA GAAAATTTGACCCCCCCGAAGTCTACAGATCGACTTGTACTGCAACACAC ATTCTTTCGAAGCGCATGATCCTACACGCAAGGATGACGAGAAGTAGTAT CCACGCAGGTGTTTCTGATTTTTTTTGAAATCTCGTCATGGACTGTGGGT ACATATTTTTGCTGTCATAGGGAGCAACGGCTGTGAATGGGCTAGTGACT GATATTGAAGTACCGGCTGACAAGGACAGCGGCAAGTTCAAGATCAGCTT CCAGGAGGCTGTTCCGGGGGGCAAGAAGTCCGGAGAGCCCAGTACAATGG AATTTGACTTCATCATCGGATCTGACGGTGCTAACTCTCGAGTGGCCAAG GTGAGAGGCGTGCTGTTTTGGTTCCGCAACGGTAAAAAATCGGCTTGAAG TAATTCCATTGTTCACTGTAAGTAAAGCACCCCCCTCTACCGGGTTGGTG AGGGTGATTAAGATCAACATGGTTGATCGAGTATTGCATACACGAGGGTC TCGACCGACATCCCCCGTACCGAAAAGCGTTATATGTTCAAGGCTAGGAT CGGGTTTTGGTATCGACCGGGGTCTTCCCGTCTGATTCGAATAGTCTCCT TCGACAAAGCACATGTGCAGGGCTTACGTTGTAAATATGTTGGATGAACG GAGGGATATATATATATATAATACTAAGTTCTCTGAGTTGTGATTTGCAA CACGTATTTACTTGGCAAATTTACTTCGCTAAACTTGTGTTCCGCTTAGG CTATGGACGCAGGGAAATACAATTATGCCATCGCTTTCCAAGAGCGCATC AAGATCTCGGACGAGAAGATGGACTTTTACAAGGTATGGTGCTTCATCGG TAACTAACGCCTTTATAAATATTTAATCGATCCAGGGACACGAAAGACGA GTTGCCCTCTGCCACAGGGAACTTTTTTAGCTTGATCGAATTCCGCCTGC GTTGGCGCAGCTCCAAAATTCCTTCCTTCATCAAGCGGTTGACATATTAC AAAATCGGCGTATTATGGTCTTTTCTTGTTTTACTCGACTTTGACAGGAC ATGGCTGAGATGTACGTGGGTGACGACGTTTCGCCTGATTTTTACGGATG GGTGTTTCCCAAGTATGACCACGTGGGTGTCGGGACCGGTACCGTGGTGA ACCGACCGGCTATCAAGGACTACCAGGTGCGTAATGTTGGTCAATCTACA CGAGGGTGCCTAACGAGTGTGGCAGTTGTTCGTGGCGGTGCGTTACAGTT GTGTACGTCACAGCCGGATGGGGTACAGAAACTGCCATTGATGATGTTTA TAGGTGAGAGAATTCTGTTGAATGCATTGACCATGGAGATGATACGTTAG TGTGGATCCGTTTCTACGGTCGATTAGGACTCTTGATCATCGGTTTAACG ACATTATCTTTTTATGTTAATCTTGTGCTCAGGACGCCATCCGGAAGCGT GCGGGTGACAAGATTGCTGGGGGAAAGATCATCAAGATCGAGGCGCACCC CATCCCCGAGAACTACCGACCAAGACGAGTCGTGGGCCGCATGGCCCTTG TGGGAGATGCCGCGGGGTAAGCAAACAGGGTTTCGAAACTTGGCGTATAA AGTTAGTAAAGGTCCGTTTGTGTTTTGTTCCCGTCATCGGCGAAACAACA AAATATTCATGGCGTGGTGTTTATGTCATGAATCTCACGTGTGATTTCGT TGGATTTTGAACTGTGGAAGTGGTTGAGGTGAAGTATTGGATGTATTCAC TCAAATTATTTCGAAAGTATACCAGGTGGACTTTGGACGATGAATGGAGC AAGTAGTAGATGAATCACATTCGTGTGGCCCGAAATATCCCTCACAACAG TTTTTTTTCGGTCGTGCTATATTCAATTTTTTGTGTAACACAGCCTGTTT CCCTCTAGTAGACCGGTATCTGTCCAGTTGAGACCGTTGGTTTTGCCAGG CTGGGTGTTCTTGGTTCAGTTGGGTGTTTTGTATTACCATAACTAGTAGT TTCTTCGTCATCACAGAGTTTGATCGCGTCTGTGCTAAAAAATAATTTAG TCGTCACGAAAGGATTAGGGACAAGTTGATTGTGGATATAATGAACATGC CGGCGTTGGCCTCTTACACAAAATTTGTCTCACAAGGGAGAGAAGCCCCG ACGCCGTTGGTCTGCACCCATTATACAGTCTACTTCTCATGTGGGCACTT GCATCTAAATTCACAGTTATGTGACGAAGTGCTCGGGTGAGGGAATCTAC TTCGCGGCTAAGTCAGGACGCATGGCTGCCGAGGCAATTGTGGACTGTGT GAGGAAAACTGGTCAGCTTCCCAAGGAGAAGCAAATGAAGGCGACATACC TCAAGGACTACGACAAGCTTTACAAGCCTACCTACCTTGTGCTTGACATC CTTCAGAAGGTGAGATAATCAGTTGAACGTGAGTGCGCAGCGCAGGACGA GTAATGATTCTAGTTGCATGATGTTTCACGTAATCTGATGATCCGAAATG CTTTTTGACCTAGCCTTTCCCCCCTCCCCCTCAATCCCCTCCTTTCTGTG TTAGGTGTTCTACTCGAACAACGCCGCACGGGAAGCTTTCGTCGAGTTGT GTGAATCCGAGTACGTACAAAAGGTTACCTTCGACTCGTACCTATACAAG AAGGTGAGGGGCATACGGTAGCAAGGAGTAGCCAAATATTGCTTGTAAAG TCTGTAGCCTCAATAGAATCGTCATGAGATGAGTAGCTCAGCGGGTTCTT CAGAGGTGAGGCAGATGGTTGACAGGCAGTTTTGTTCCTCTCGCTTCGCT TTGTGTCAAAGGGAATTGGTGTTTCCGCCCCGATCACAAACTGCCGAATC TCGCGCCGCTTACGTGTCGTGAGCTAGGCCAGTCACCTGAAGCAAATACC TTATAAATGATGTATTGATACAGTGCACAAAGCAACGTGATGCGTGCCTC GGATATGAGAAGCCGAAATGAGCGTTCGTCTTTTTGAACCGCGCTTGTCG GGTTTTTTTCCAACAGGTCCAGGGAAACAACCCCGTTGAGGACATCAAGC TTCTTTTCGGCACTGTTGGGTCTCTCATCCGAGGGCAGGCGTTGGCGCCT CCTGATGTGTCCATTTCCAACCCTGTAGAATCTCTCAAGAGGCTGTAGAC CGTTTCACTTCAACGTGCGGTCACCGTTTTCGATAGCTGGTGAAATATGG ATGGAAGGAGAGACCATGGTTTAGGAATCTGTTGATGGCGGTGGTCATAA CATGGCGAATTGTTACAGTCAGAATCGTATGGTTCCAGACGGAGGGGTGA GCACGGGGGTGGTGTTGATTGTTCGGCAAAAGCATGTGCCTCCTGTTAAG GTCAACTTGCCTGCGTTTATTGTGGTGTTCGGTGTGTACAAGGAGAGGAG TACGTCGTGTTTTTTTCGCGTACGAATAGTCTCGTTTTTGTCATGTATTC CCAGCTGCACCGCCAGTTGTCATTTTTGAGGTAATTGAACAAGGAGTGTC CATCTTTCAAAGTTTTAATCGTGATACTACATGAGCAGCAGTGCACGTGC GTCTGTCTCTGCTGCAGCTATGGACGAAAGAGAGTGTTTGTCAACGTATA TTTTATTCCAAAAAGTCGTTGCAGATACATGGTTGTCAACGTTCGAGTAG TGTCGATATATTTCACTGGTCCTTTGGTGGAGTTTAATTTTTGTATTTTC TCCCGTTTTTTAACCTCTATAACTGTTCCGAAAGAGAAGAAACTACGGTT AGACGAAATTGAAGATAATAATGTGTAGTCATGAAGTATGCGGCGCGGTT AGTATACTATATTTCGACCGACCATGTGCCATGCACGCGGTTATGACGTT TAATGCGATGTTATCCTCGTAAACAAGAGTGTGAGAAAAATATATATTCC GATTCTCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1798:13664..21271-

>mRNA_H-paniculata_contig1798.4332.1 ID=mRNA_H-paniculata_contig1798.4332.1|Name=mRNA_H-paniculata_contig1798.4332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at H-paniculata_contig1798:13664..21271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCACGCCGTAGCATTGCCACGGCGGCTGTAGTTTTGAGCGGCTG
TGCGGGATGTGAGGCTTGGGTTGTCTCGCCTGCGTCACGAGGCTTCACAG
GGCAGCGGGTAGCGATGCCGGCCACATCTTCAGTGTCAGATGGCGCCACG
CCGTAGCATTGCCACGGCGGCTGTAGTTTTGAGCGGCTGTGCGGGATGTG
AGGCTTGGGTTGTCTCGCCTGCGTCACGAGGCTTCACAGGGCAGCGGGTA
GCGATGCCGGCCACATCTTCAGTGTCAGGACTTGACATGAAGTACAAGGT
GGCTGTGGTGGGGGGCGGGCCTTCTGGTGCTTGTGCGGCGGAAGTCTTGG
CGAAAAGTGACGACGTTGAAGTTGTGCTGTTTGAGCGAAAGATGGATAAC
GCCAAGCCATGTGGGGGTGCCATCCCTCTGTGCATGGTCGATGAGTTCGA
CTTGCCAGTTGACATTATTGACCGCAAGGACTTGACATGAAGTACAAGGT
GGCTGTGGTGGGGGGCGGGCCTTCTGGTGCTTGTGCGGCGGAAGTCTTGG
CGAAAAGTGACGACGTTGAAGTTGTGCTGTTTGAGCGAAAGATGGATAAC
GCCAAGCCATGTGGGGGTGCCATCCCTCTGTGCATGGTCGATGAGTTCGA
CTTGCCAGTTGACATTATTGACCGCAAGGTCCGGCGGATGAAAATGATAT
CGCCGACAAATCGCGAGGTGGATATTGGTCAGACCCTCGCAGCAGATGAG
TATATTGGCATGGTTCGGCGAGAGGTGATGGACGGCTTCATGCGGAACAG
GGCAATCGACTTGGTCCGGCGGATGAAAATGATATCGCCGACAAATCGCG
AGGTGGATATTGGTCAGACCCTCGCAGCAGATGAGTATATTGGCATGGTT
CGGCGAGAGGTGATGGACGGCTTCATGCGGAACAGGGCAATCGACTTGGG
AGCAACGGCTGTGAATGGGCTAGTGACTGATATTGAAGTACCGGCTGACA
AGGACAGCGGCAAGTTCAAGATCAGCTTCCAGGAGGCTGTTCCGGGGGGC
AAGAAGTCCGGAGAGCCCAGTACAATGGAATTTGACTTCATCATCGGATC
TGACGGTGCTAACTCTCGAGTGGCCAAGGGAGCAACGGCTGTGAATGGGC
TAGTGACTGATATTGAAGTACCGGCTGACAAGGACAGCGGCAAGTTCAAG
ATCAGCTTCCAGGAGGCTGTTCCGGGGGGCAAGAAGTCCGGAGAGCCCAG
TACAATGGAATTTGACTTCATCATCGGATCTGACGGTGCTAACTCTCGAG
TGGCCAAGGCTATGGACGCAGGGAAATACAATTATGCCATCGCTTTCCAA
GAGCGCATCAAGATCTCGGACGAGAAGATGGACTTTTACAAGGCTATGGA
CGCAGGGAAATACAATTATGCCATCGCTTTCCAAGAGCGCATCAAGATCT
CGGACGAGAAGATGGACTTTTACAAGGACATGGCTGAGATGTACGTGGGT
GACGACGTTTCGCCTGATTTTTACGGATGGGTGTTTCCCAAGTATGACCA
CGTGGGTGTCGGGACCGGTACCGTGGTGAACCGACCGGCTATCAAGGACT
ACCAGGACATGGCTGAGATGTACGTGGGTGACGACGTTTCGCCTGATTTT
TACGGATGGGTGTTTCCCAAGTATGACCACGTGGGTGTCGGGACCGGTAC
CGTGGTGAACCGACCGGCTATCAAGGACTACCAGGACGCCATCCGGAAGC
GTGCGGGTGACAAGATTGCTGGGGGAAAGATCATCAAGATCGAGGCGCAC
CCCATCCCCGAGAACTACCGACCAAGACGAGTCGTGGGCCGCATGGCCCT
TGTGGGAGATGCCGCGGGGACGCCATCCGGAAGCGTGCGGGTGACAAGAT
TGCTGGGGGAAAGATCATCAAGATCGAGGCGCACCCCATCCCCGAGAACT
ACCGACCAAGACGAGTCGTGGGCCGCATGGCCCTTGTGGGAGATGCCGCG
GGTTATGTGACGAAGTGCTCGGGTGAGGGAATCTACTTCGCGGCTAAGTC
AGGACGCATGGCTGCCGAGGCAATTGTGGACTGTGTGAGGAAAACTGGTC
AGCTTCCCAAGGAGAAGCAAATGAAGGCGACATACCTCAAGGACTACGAC
AAGCTTTACAAGCCTACCTACCTTGTGCTTGACATCCTTCAGAAGTTATG
TGACGAAGTGCTCGGGTGAGGGAATCTACTTCGCGGCTAAGTCAGGACGC
ATGGCTGCCGAGGCAATTGTGGACTGTGTGAGGAAAACTGGTCAGCTTCC
CAAGGAGAAGCAAATGAAGGCGACATACCTCAAGGACTACGACAAGCTTT
ACAAGCCTACCTACCTTGTGCTTGACATCCTTCAGAAGGTGTTCTACTCG
AACAACGCCGCACGGGAAGCTTTCGTCGAGTTGTGTGAATCCGAGTACGT
ACAAAAGGTTACCTTCGACTCGTACCTATACAAGAAGGTGTTCTACTCGA
ACAACGCCGCACGGGAAGCTTTCGTCGAGTTGTGTGAATCCGAGTACGTA
CAAAAGGTTACCTTCGACTCGTACCTATACAAGAAGGTCCAGGGAAACAA
CCCCGTTGAGGACATCAAGCTTCTTTTCGGCACTGTTGGGTCTCTCATCC
GAGGGCAGGCGTTGGCGCCTCCTGATGTGTCCATTTCCAACCCTGTAGAA
TCTCTCAAGAGGCTGTAGGTCCAGGGAAACAACCCCGTTGAGGACATCAA
GCTTCTTTTCGGCACTGTTGGGTCTCTCATCCGAGGGCAGGCGTTGGCGC
CTCCTGATGTGTCCATTTCCAACCCTGTAGAATCTCTCAAGAGGCTGTAG
back to top