mRNA_H-paniculata_contig1797.4326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1797.4326.1
Unique NamemRNA_H-paniculata_contig1797.4326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: D8LE99_ECTSI (ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE99_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.170e-24
Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:  127 MFQSRLLLTIALVAASASNWGSAFVPHVPKTSPTSGQKLVRTARATWTG-RPDAQSASPRSPYAAVRMAAGVTMSTPDTIVAKPTVGFSNEQQTS---EIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMAQAHQPHQCQGD 594
            MF+   +L +ALVA++++    AFV  VP                 WT  RP A S  P S   A+ MAAGV M  P+   A P++G  ++++ S    IRPEDKYKVLLFNDNGNTREYVSRSLVQVVGL E  A+ IMQQANDNGMAQ    HQ   D
Sbjct:    1 MFRPLQVLILALVASAST----AFV--VPA----------------WTAMRPAAASGRPIS---ALNMAAGVAM--PEIKTAGPSIGVLDKKEVSFETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQANDNGMAQVGIWHQEMAD 133
[Close]
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A835ZJP8_9STRA (ATP-dependent Clp protease adaptor protein ClpS-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.050e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  418 PEDKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMA 561
            P DK+KV+LFNDNGNTREYV+RSLVQV+G+ E+ AY IM  A+ NGMA
Sbjct:   56 PADKFKVMLFNDNGNTREYVARSLVQVIGMTESDAYDIMTMAHKNGMA 103
[Close]
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A7S2R9I8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.370e-5
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:  334 GVTMSTPDTIVA---KPTVGFSNEQQTSEIRPED--KYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGM 558
            G T+ TP  + A    P+  F     T + RP    +Y+VLLFND  NT+EYV+R L+ V GL EN A+  M QA+ NGM
Sbjct:   56 GRTLCTPPPLQAFSSAPSKQFVPPDVTPKSRPGGGARYRVLLFNDPMNTKEYVARQLMTVAGLSENNAFDCMMQAHRNGM 135
[Close]
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A7S2VY96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VY96_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.390e-5
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  424 DKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMA 561
            D ++V ++ND  NTRE+VSR LVQ+VGL E  AYQ M QA+ NG+A
Sbjct:  107 DAWEVRIYNDVKNTREFVSRCLVQIVGLSETFAYQTMMQAHKNGLA 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LE99_ECTSI5.170e-2450.63ATP-dependent Clp protease adaptor protein ClpS n=... [more]
A0A835ZJP8_9STRA8.050e-1270.83ATP-dependent Clp protease adaptor protein ClpS-do... [more]
A0A7S2R9I8_9STRA1.370e-545.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2VY96_9STRA1.390e-558.70Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1797contigH-paniculata_contig1797:6631..12933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue4.9e-22
Seed eggNOG ortholog2880.D8LE99
Hectar predicted targeting categorychloroplast
EggNOG free text desc.ATP-dependent Clp protease adaptor protein ClpS
EggNOG OGs2CYZ7@1,2S7DJ@2759
Ec32 ortholog descriptionATP-dependent Clp protease adaptor protein ClpS
Ec32 orthologEc-00_001440.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1825
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1797.4326.1prot_H-paniculata_contig1797.4326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1797 6757..11783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.1726692-UTR-H-paniculata_contig1797:6630..67561622929402.1726692-UTR-H-paniculata_contig1797:6630..6756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1797 6631..6756 +
1691480845.3793688-UTR-H-paniculata_contig1797:6630..67561691480845.3793688-UTR-H-paniculata_contig1797:6630..6756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1797 6631..6756 +
1622929402.3253753-UTR-H-paniculata_contig1797:11783..124561622929402.3253753-UTR-H-paniculata_contig1797:11783..12456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1797 11784..12456 +
1691480845.4473271-UTR-H-paniculata_contig1797:11783..124561691480845.4473271-UTR-H-paniculata_contig1797:11783..12456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1797 11784..12456 +
1622929402.3360827-UTR-H-paniculata_contig1797:12471..129331622929402.3360827-UTR-H-paniculata_contig1797:12471..12933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1797 12472..12933 +
1691480845.4553943-UTR-H-paniculata_contig1797:12471..129331691480845.4553943-UTR-H-paniculata_contig1797:12471..12933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1797 12472..12933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.1893854-CDS-H-paniculata_contig1797:6756..69451622929402.1893854-CDS-H-paniculata_contig1797:6756..6945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 6757..6945 +
1691480845.397416-CDS-H-paniculata_contig1797:6756..69451691480845.397416-CDS-H-paniculata_contig1797:6756..6945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 6757..6945 +
1622929402.2005632-CDS-H-paniculata_contig1797:7709..78231622929402.2005632-CDS-H-paniculata_contig1797:7709..7823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 7710..7823 +
1691480845.4122121-CDS-H-paniculata_contig1797:7709..78231691480845.4122121-CDS-H-paniculata_contig1797:7709..7823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 7710..7823 +
1622929402.250555-CDS-H-paniculata_contig1797:8347..84581622929402.250555-CDS-H-paniculata_contig1797:8347..8458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 8348..8458 +
1691480845.4206724-CDS-H-paniculata_contig1797:8347..84581691480845.4206724-CDS-H-paniculata_contig1797:8347..8458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 8348..8458 +
1622929402.295206-CDS-H-paniculata_contig1797:9228..92521622929402.295206-CDS-H-paniculata_contig1797:9228..9252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 9229..9252 +
1691480845.4296842-CDS-H-paniculata_contig1797:9228..92521691480845.4296842-CDS-H-paniculata_contig1797:9228..9252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 9229..9252 +
1622929402.310248-CDS-H-paniculata_contig1797:11657..117831622929402.310248-CDS-H-paniculata_contig1797:11657..11783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 11658..11783 +
1691480845.4387503-CDS-H-paniculata_contig1797:11657..117831691480845.4387503-CDS-H-paniculata_contig1797:11657..11783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1797 11658..11783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1797.4326.1

>prot_H-paniculata_contig1797.4326.1 ID=prot_H-paniculata_contig1797.4326.1|Name=mRNA_H-paniculata_contig1797.4326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MFQSRLLLTIALVAASASNWGSAFVPHVPKTSPTSGQKLVRTARATWTGR
PDAQSASPRSPYAAVRMAAGVTMSTPDTIVAKPTVGFSNEQQTSEIRPED
KYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMAQAHQP
HQCQGDKVTDQSRRCIAARRPSRSPTVEGPPAAPAQS*
back to top

mRNA from alignment at H-paniculata_contig1797:6631..12933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1797.4326.1 ID=mRNA_H-paniculata_contig1797.4326.1|Name=mRNA_H-paniculata_contig1797.4326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6303bp|location=Sequence derived from alignment at H-paniculata_contig1797:6631..12933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCCGTCCGCACCTGTTTGGAGAGAGTGACACACCCCAATAGCTAAAGT
TCCCCTGGAAAGATCTTTCATCTAAAAGACTGTCAATTATTGCCCTGTGT
CAACAGGATAAAGTTCGTTTGTCACAATGTTCCAATCGCGACTGTTGTTG
ACGATTGCCTTGGTGGCAGCCTCCGCGTCGAATTGGGGAAGTGCCTTCGT
TCCTCATGTGCCCAAGACCTCTCCTACCTCGGGACAGAAGCTCGTGAGAA
CTGCCCGCGCTACCTGGACTGGCCGACCTGATGCGCAAAGCGCTTCGCCT
CGGTCACCTTATGCAGTGAGTTTCGCATCGCTTAGACTTCTCTGTTCGTC
TGATCGGTCGTCACTTATTTGGCGATAAATCAAAGTGTGGGAGTTGTTTA
CGTCATGTGATGGAATCGTGAAACCCAAAATGCATCAGCTCAGCTGCCTG
ACGCAACAGATACATGGAAGGTTGATCAAGATTTGGGCAGAGTACGACGT
TCTGCATTCCCCTCTGAGCCTATGGTACCTGTGGTACGCATTAACCGCAA
ACCTCACCGTTATCCTGGAGTAGTGCTGAATGTTGCGGTGAGAAGTGCGG
ATTAGACCTTCGAGGGCAGCGAGAAGGACTCACTAATGGTACGAGGTTCA
ACTTCGATACGGTTATGGAGGAGTGAGAGCATTTCTTTCAGCATTCTCAC
GAAACACACAAAATATCACGATCGGATGTTCTATTTTGCGTGTGGCGCCT
TCGAGACACATATCAAGCTGTCAACCTTGGATCCAGTACGTGAAACCAGC
AGAACTCCTACATCTTTCTGTTCTTGTAGTTTCCCGCTTTTGTTGCAAGC
CGGACTCCAAAGTAGGACATTTCTGAATCACAAACCGCTTCTTTTCTTGT
AGCAACAAGACAGTGGATTACATTGATTGTCCAATAAAGACCGGCAGGGC
CGCACAATGTACAGATTACAATGCAGAGGGTGTGCTTTCGTCAGCATGTT
TTGTTCCTTGGTTGCGATTTTGATTCGTCTGGTCTGATTACTGCTTGCAC
GGATTGTGGTTTTTTTCTTCTCTCAAAAGGCGGTCCGTATGGCGGCGGGA
GTAACTATGTCGACACCCGACACCATCGTCGCGAAGCCAACTGTAGGATT
CTCCAATGAGCAGCAGACCAGTGAGATCAGACCTGAGGACAAGGTGAGAT
GTTGCTTTTGGGAGGGACATGTACAACATCAATTTTCAATTGCCCACATA
AAATATCTGTTTTCATCGCGAACTATACTTAACTATATCACAACGAACAC
ACCTTTGTTCAACTCAAGGCTTGTTATGCTTCCTCTCCGATACATGAACG
GGGATTTGCGTTTGACCTCGTATTATGAACTCTGGTCACCGACTTCCTGA
TCATTGAAAGCAGAACATATCGGACTGTATAAAAGAGGACAGCTCAGGCA
AACCCGCGATGGCTTTTGTGACCGTGTTCATAAAGATATTTGTTCACGTT
TGGTGTTATTCCGTCCCTTCAGCGGCTCCATATCACTGATATCATGGGGG
AAATCTGCGTCATGTTTCACCGTTGTAGCTGGATAAGATGTGTCGACTCT
TGAAACATTATGGATTGAGTATTGGGAAAGGCGGTAATCCCCTCCTGCTG
TACACCGAGAACTGATTCGTTACCCATGCCCTGTCTTCGGCAACATTTTC
ACGCTTGCGTTTTTCAGTACAAGGTTCTACTTTTCAACGACAACGGCAAC
ACCCGCGAATACGTCTCGAGATCCCTTGTGCAAGTGGTGGGGTTGCCGGA
GAACGTGGCTTACCAAATCATGCAGCAGGTGAAATGAGTATTCATTTTAT
ACCTGCAGGTTTTTGGTAACCGATGAATTGTGAGGTTATACACATCATAC
TGATATTATATATGCTGTATCCATTACGCCGATGTGTCCATCAGTATTTT
TCAACTTCTCGTCAGACAAACGGCGTCTAATAACCGCTTGCTGCAACAAC
AGACAAGGCTTGTAGTTCTATCACCATTGCTCCGCAACTAGAAAGGCTTT
ACGTAATATACCCTAGTCGACAAGGAATGATCCTCAGTACAGAACAGTTT
TAGTTTTCAGTAAACCTCGGAAGATACACCGAATCCAAGATACAAATATT
TTTTCTGAGGTTCCGCCGCATAACTGTCTTTCTTGATCTTTGGTCCAAGC
TGTCATCATCGTCATTCTTCTTCATTTGTTGGGTGTCATACTAGGTACAG
AAGGTTATTGTAGTACGTTTTGTTTTTTTTAACCCCCGGTAGGCTGAGGC
AAAAACATTTACCGATGCTTCCATACCGAAGTATTTTACCAAAGTATTTT
TACATTTCCTTTAACAGAACAGAGTTATCTATTCCTCTGCGGGGTAGGCG
CCACCCCGGTTCGGTCGTACTAAGTAGGCAGTGTGGGGGTTGCACCCACT
AAAAGATCTCTGATTACACTTGCAGTCATGCTCAGTTCACGAGCTACCCT
ACCCGTTCGAGCTTAGGTCCGTGGATTGTAGTACGTTAACATCATCAACT
TCGTTTGTACGGCCCGCGTGCTTGCTACTTGCGTTCTGCTCCGAATAGGC
CAATGACAACGGTATGGCTCAGGTAGGAGTGTGGCACCAGGAGATGGCGG
ACGCCTACAGCTCATCCCTCAAAGCGCGGGGCCTCGTATCTGATATTTAC
CCGGTGGACTGAAGGTCGCTTCGCTCGGCCTCCCGTAGATGTTGGCCATG
CGTGTGACTCGTTCGACTTGACCGAGCTCCTCCAACCACAGAATAATTTT
CTGACATTTCACGGCGAAATTCACTGTCTCATAACGAAGACCCTTGAAGC
ATACCCGTTCACGTTGGTATTCATTTGCACGATTAGATCCACGGATTCTG
CTGTATTCCGTTTCCCTTATAAGTAAGTAGTGTTCGGAGATGTAGACGCG
GGCAACATGAACTCGACTTGTGGATAGCAGTTCCAGCGGACATGCTCACT
AGGAAGAGAGCGATATTGCTGTTAGGTGTGATTTTTTTATTAGTTGGTTG
CAGCGTATGCTCGACCTCCACGAGAAGCGGTTGTTTTGTATTGCATTTGG
GGTTGTGCCGAGGCCATTCTTTCTATGGGCTGAATATTCAGTATAGACTA
GTACGTGTATGTGCCGCCCTACAGAATGCGGCACCCCTATTTACGTACAG
AGTACTAGTACATGTCTAAAACAAATTGCAGCAGGCACTTGTATAGAATT
TACCCATACACGCAGTTAATAAAATGGTCGGGGAGCGAGGCGCAGGTGAC
TAGAATAGCATTTTTGTACCACCACCCTCGAAAACATGGTCCGGTGCTGT
AGGCAACGGACGTGCCGCATGATGTTGCAGTACAATAGTTTTGTGTATCT
TGATACGGATAACCCTGACCCTGCGCTCGAACATCGATTTGTTTCACGGA
GGCAGAGCGACGTGTGTTGCATTGTGTGATGGTTGATTTGGTTGTCCCAT
GTGTTTATGAGTCAGTTTCAGTTTGTTTTTCATGTACGGAGTGCTTGGTT
TTGTCACGTGAACGCGAAGACCGTCGTTGTTTATTTTATGAATAGACGTT
TTTACTCCTCACTATCGTCGGTGGGTACTCATGTCGCCACATGTTCGCCG
GCCAGCAGGCACGCAAGCCGATGAATGGAATCCATAAGTCAATGTCGACA
GCGAAACCTGTATTGTGCGAATATGGCCACGAGGTCGACCACGTAATCCA
TTACCCATCAACGAAGAGCGTATACGTAACACGTATATTCCCCCTTTAAA
AAGTGTGCTTATCGATATTGATATACCGAGGACAGTATTGAATAGTGCAC
AATTTCGTGCGGCATCGCCGGAAAGCTGTGAAAGGATCGTTTCTGTCGAG
ACTGACGCACATCCGGCAGCCTGCCGCCAAACCGAGGTCTGGGGTGCCGC
GAGATTTGGCCGTAGGTGAAATTTGGATGGACATGTCTTCGCCGTAACGA
GAATTTTTCCAACATATTTTTCTTAGACGGCGAGAAATAGGTGCAAAATT
AAACTTATTTTTTAAAAGTATCTCTATAAACATGGAGGCGGCCCGGCCTC
GGGCGAGAGCATCAGAAGTTTTCCCATCAGTCACTGAATTTGGAAACGTT
CGAAATATTCCAATCCCATACGACTACGGTTGTTTGGAGCAATGTTTACA
AAAATCCACAACTGTTCGCCTTTAGGGTCGGCATGACTACGTTCGTGTAT
TCAGTTTATCCCGGTCTATCTAAAGCACTAATGCTCCGAATAAATTATAA
CAGGAGTCGGCACCTATTTCCATGTGTCAGCACATTCTCTACCCCGATAA
AATGTTTTGGTGTTCGCCGCGAATGCTCCAAGTATTCGTATTCTGACGGG
GGTTAAACGTGTTGTTTTGGGCGAAATCATTGCAATGGACACCTTCAACC
TGAGCGAGACTTTCGATTGGTGGAGTGAACGTTGAACGTTTCCCCGCCTA
CTCTCTTCCGGGTCTCCGCTGTGTATGATTGTGGATCATGGTGGTTGTCG
CATCGATGTTCGTTTCATCATGTTTTTTTTTTCATTTTTGGCGGCTGCTC
GCTGGGGGGTAGACCTGGTGTCACAAGGGTGGGAGTACGTAGTGTGTCTG
GTTTCGCTTTTCTTTTTTATATTTCGTCATGGATCAGTTTACCTATCGGA
TCCTCCGATCTGACGCTGGGACTATAATACCTCGGTTATTGTCTTTTGTT
ATCATGCGGTGGGAGCACTGTCTTGCTTGCTGGTCAACGTTAGAGTTGAC
TGCGGTATTCTTCAATCACTAGTAGGAAATTCTGTTCTCAGACCACGGGT
CTGAGCCACTGAACTGATGTGTTGAAGTGCTTTGATCGTTGTAAGAGTCA
TTTGATTGACCTTTTCTTCTTCTGCGAATACCTACCTCCCCACGTTACCT
CTAATCTTCTGTGTTCATTCAACCCGACACTAACCGGCGACGCCTTTTGT
GTATGTATTTTTTCCGCCATCAATCAGGCACATCAGCCACATCAATGCCA
AGGAGACAAGGTGACCGATCAGAGTAGAAGATGCATCGCTGCTCGCCGCC
CTTCCCGTTCCCCCACTGTTGAAGGTCCACCAGCAGCCCCAGCGCAGTCG
TGATTGCTAGCATCGCCACTATCTTACGGGATGGTACCGGGAAACAATAG
TGATGGGGGACTGCACGCAGCAGCTGCGCCGTTGCCTATCACGACGAAAG
CGAAACGGAATACACAGCTAAAGCACTGCAACAACTGCGGCCATCTCTGT
CAGATAGGATTCTTTGCGCAGTACCATCGGAAGCGTTTGCCTAACGCTAG
AAAGGGTGATCGTGCGAACGAGCAGAGCCGATGCCCCGTCCCACAACATC
TTCGCCGTGTGCCGACGCCGGGAAGCTTGGCCACAGCGCGCGACACTTCG
GCGGCAAATGTTTCTGGTCTGGTGATGCCAACCATTGAGGGGGCTACAAA
GAAGCTGCGCAACGCAAGGCAGACAAAAACGCCACGTAGTGGGCGATGAC
AGAGAGGGTGTTCGTAGAACGTGCAGAGCAAGGATACTGTGGTCATATTT
AGTAAAGTAGACAATAGCTAACAGCAGCATGCTCAGCGGGGTAAATGGAA
CACAGCATCAGCTCAATGTTTGTGCATGTATCTGGAGTGACTGAAGCGTG
TTTTTCACCACGTGGCACAGTTAGGTTAGTCCTGTAAATTTCCTATACAT
ACAGCGGAAATATATGTGTAGTTGTTTTATTGCTTATTGGAGTGATTCTG
ATTTTTTTTTTTTAATTAACCCCCGGAAGGCGAAGGCAAAAACCTCTATC
CGATGCTTCCATACTTGAATATTTTACCAAAGTATCTCTACATTTCCTTT
AACAGAACATAGTTATTTATTCCTCTGCGGGGTAGGCGCCACTCCGATTC
GGCCGAACCAAGTAGGCAGTGTGGGGGTTGCACTCACTAGAAGACCTCTG
ACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTCCTACCCGTTCG
GGCGTAGGTCCGTGGGTGATTATGAAATTGGGAGTTGTTTTTTTCTGTCA
GGGCCAGGACAAATGTCGTGCAGTTGCAGAAACTAGGGTAATGAGTTTCA
TTCTTTCTGGTACTATTTGACTGTCGGGAGTGATATGAGACGTCGCCAAC
TCTCTTAAGGACAGCGGAGATATTTTGCTTCGCTGTCTTTGCTAAGCGGG
TGTAATAACTCATCATAACCTTCGGCGCTCGTCACTATTTGTTGGTTTTC
CTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1797:6631..12933+

>mRNA_H-paniculata_contig1797.4326.1 ID=mRNA_H-paniculata_contig1797.4326.1|Name=mRNA_H-paniculata_contig1797.4326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig1797:6631..12933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAATCGCGACTGTTGTTGACGATTGCCTTGGTGGCAGCCTCCGC
GTCGAATTGGGGAAGTGCCTTCGTTCCTCATGTGCCCAAGACCTCTCCTA
CCTCGGGACAGAAGCTCGTGAGAACTGCCCGCGCTACCTGGACTGGCCGA
CCTGATGCGCAAAGCGCTTCGCCTCGGTCACCTTATGCAATGTTCCAATC
GCGACTGTTGTTGACGATTGCCTTGGTGGCAGCCTCCGCGTCGAATTGGG
GAAGTGCCTTCGTTCCTCATGTGCCCAAGACCTCTCCTACCTCGGGACAG
AAGCTCGTGAGAACTGCCCGCGCTACCTGGACTGGCCGACCTGATGCGCA
AAGCGCTTCGCCTCGGTCACCTTATGCAGCGGTCCGTATGGCGGCGGGAG
TAACTATGTCGACACCCGACACCATCGTCGCGAAGCCAACTGTAGGATTC
TCCAATGAGCAGCAGACCAGTGAGATCAGACCTGAGGACAAGGCGGTCCG
TATGGCGGCGGGAGTAACTATGTCGACACCCGACACCATCGTCGCGAAGC
CAACTGTAGGATTCTCCAATGAGCAGCAGACCAGTGAGATCAGACCTGAG
GACAAGTACAAGGTTCTACTTTTCAACGACAACGGCAACACCCGCGAATA
CGTCTCGAGATCCCTTGTGCAAGTGGTGGGGTTGCCGGAGAACGTGGCTT
ACCAAATCATGCAGCAGTACAAGGTTCTACTTTTCAACGACAACGGCAAC
ACCCGCGAATACGTCTCGAGATCCCTTGTGCAAGTGGTGGGGTTGCCGGA
GAACGTGGCTTACCAAATCATGCAGCAGGCCAATGACAACGGTATGGCTC
AGGCCAATGACAACGGTATGGCTCAGGCACATCAGCCACATCAATGCCAA
GGAGACAAGGTGACCGATCAGAGTAGAAGATGCATCGCTGCTCGCCGCCC
TTCCCGTTCCCCCACTGTTGAAGGTCCACCAGCAGCCCCAGCGCAGTCGT
GAGCACATCAGCCACATCAATGCCAAGGAGACAAGGTGACCGATCAGAGT
AGAAGATGCATCGCTGCTCGCCGCCCTTCCCGTTCCCCCACTGTTGAAGG
TCCACCAGCAGCCCCAGCGCAGTCGTGA
back to top