prot_H-paniculata_contig17944.4316.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17944.4316.1
Unique Nameprot_H-paniculata_contig17944.4316.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length299
Homology
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BLAST of mRNA_H-paniculata_contig17944.4316.1 vs. uniprot
Match: D8LU71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU71_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.920e-94
Identity = 171/300 (57.00%), Postives = 217/300 (72.33%), Query Frame = 0 
Query:    4 QVFSHSRLVLRNVAGTLGNLTPVL--KSTPTGGKAHSNDGPTIYTVLRKLSEVDDLCVLFRSSAILYGLTRKPNWLRLLPDLTEVSKILLKLFRSGVLQTQNYCLQAFFNLAHNQEFALAVINS-DLMEDFIVACMVQTNRRETPWQSPIYSILAWHNSHIKEMSSQVLYYLISNPTTRIAVFTGKGLWTLMQLAAVSSSVVAMRLALLALFNLSCDLRANHKWIDENIVAVVLDFDDEVLGAPAYPGLLYLLSTH-RRLANTLTSTRIAREARVKTEGLKFLRRNRAREEDEKFMARAT 299
            Q  S   +VLR+V+G LGNL+ V+   S+  GG        T++  L++L+ VDD  + FR+SAILYGLTRK +++ +LPDL  +  ++ KLFRSGV QTQNYCLQAF N+AHN++FA ++ +  DLME FIV CMV TN                 +S++KEMSS+VLYYLISNP+TR+    G+GLW L+QLA  + S V+MRLALLALFNL+CDLR N +W++EN VA VLDFDDEVLGAPA+ GLLYL STH RRL+  L STR+A EARVK EG KFL+R+RA EED+KFMAR T
Sbjct:  112 QALSPRLVVLRHVSGVLGNLSRVIVASSSDEGGPPRWKSRITLFDALKRLACVDDQRLAFRTSAILYGLTRKRDYVNILPDLRGLGDVIFKLFRSGVPQTQNYCLQAFCNMAHNKDFAASIASDPDLMEGFIVGCMVHTN-----------------SSYMKEMSSEVLYYLISNPSTRLTALKGQGLWALVQLADANGSTVSMRLALLALFNLACDLRENARWLNENTVAAVLDFDDEVLGAPAFTGLLYLASTHHRRLSQMLISTRMALEARVKIEGAKFLKRDRALEEDKKFMARTT 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17944.4316.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU71_ECTSI1.920e-9457.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 3..284
e-value: 7.2E-8
score: 33.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 168..185
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 215..299
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 186..190
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..214
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..167
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17944contigH-paniculata_contig17944:953..4607 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17944.4316.1mRNA_H-paniculata_contig17944.4316.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17944 953..4607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17944.4316.1 ID=prot_H-paniculata_contig17944.4316.1|Name=mRNA_H-paniculata_contig17944.4316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MRLQVFSHSRLVLRNVAGTLGNLTPVLKSTPTGGKAHSNDGPTIYTVLRK
LSEVDDLCVLFRSSAILYGLTRKPNWLRLLPDLTEVSKILLKLFRSGVLQ
TQNYCLQAFFNLAHNQEFALAVINSDLMEDFIVACMVQTNRRETPWQSPI
YSILAWHNSHIKEMSSQVLYYLISNPTTRIAVFTGKGLWTLMQLAAVSSS
VVAMRLALLALFNLSCDLRANHKWIDENIVAVVLDFDDEVLGAPAYPGLL
YLLSTHRRLANTLTSTRIAREARVKTEGLKFLRRNRAREEDEKFMARAT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold