prot_H-paniculata_contig1794.4313.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1794.4313.1
Unique Nameprot_H-paniculata_contig1794.4313.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length147
Homology
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-13
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   93 KGKSKCKDHQGPQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            +GK + +  + P+AG+V K+ VSNFMCHRKLS+ L KHVNFING NGSGKSAILA
Sbjct:   70 RGKKRKRKTEQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILA 124          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A7S1VYB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VYB1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.630e-13
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0
Query:  104 PQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            P+AG++KKI V NFMCHRKL++ L ++VNFING+NGSGKSAILA
Sbjct:  100 PEAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILA 143          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A6V2GEJ9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GEJ9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.730e-12
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0
Query:  104 PQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            P+AG++KKI V NFMCHRKL++ L ++VNFING+NGSGKSAILA
Sbjct:  100 PEAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILA 143          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A7S4RG96_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG96_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.330e-11
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0
Query:  104 PQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            P+AG++KKI V NFMCHRKL++ L ++VNFING+NGSGKSAILA
Sbjct:  100 PEAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILA 143          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.980e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0
Query:  105 QAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            +AG+V KI+VSNFMCHRKL++ L K VNFING NGSGKSAILA
Sbjct:  175 EAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILA 217          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A5J5BB07_9ASTE (AAA_23 domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BB07_9ASTE)

HSP 1 Score: 65.9 bits (159), Expect = 3.120e-10
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0
Query:  103 GPQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAIL 146
            GPQAGI+ KI + NFMCH  L I LG  VNF+ G NGSGKSAIL
Sbjct:   16 GPQAGIISKIRLENFMCHSNLQIELGDRVNFVTGQNGSGKSAIL 59          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A8J2X4G0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4G0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.060e-9
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0
Query:  106 AGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            AG++K+I   NFMCH+KL I LG+ +NFING+NGSGKSAILA
Sbjct:  100 AGLIKEIYCENFMCHKKLEIKLGRRINFINGANGSGKSAILA 141          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A2R5G690_9STRA (Structural maintenance of chromosomes protein 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G690_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.440e-9
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0
Query:  105 QAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA 147
            + G VKKI  +NFMCHR+L ++LG+H+NFI G NGSGKSAI+A
Sbjct:   88 ECGKVKKIECTNFMCHRRLEVNLGRHINFITGQNGSGKSAIVA 130          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: A0A2C9LXU8_BIOGL (Structural maintenance of chromosomes protein 6 n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LXU8_BIOGL)

HSP 1 Score: 65.1 bits (157), Expect = 1.940e-9
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0
Query:  104 PQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAIL 146
            P AGI+++IS+ NFMCH +L ++LG HVNFI G NGSGKSAI+
Sbjct:   63 PVAGIIRRISIGNFMCHNRLDVNLGTHVNFIVGRNGSGKSAIV 105          
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Match: UPI00065C06D6 (structural maintenance of chromosomes protein 6 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065C06D6)

HSP 1 Score: 64.7 bits (156), Expect = 2.650e-9
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 0
Query:  104 PQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAIL 146
            P AG++K++S+SNFMCH +L + LG HVNFI G NGSGKSA++
Sbjct:   68 PVAGVIKRVSMSNFMCHDRLDVVLGSHVNFIVGRNGSGKSAVM 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1794.4313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI1.840e-1367.27Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A7S1VYB1_9STRA9.630e-1372.73Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6V2GEJ9_9STRA9.730e-1272.73Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RG96_9STRA1.330e-1172.73Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
D7G4M2_ECTSI8.980e-1176.74Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A5J5BB07_9ASTE3.120e-1068.18AAA_23 domain-containing protein n=1 Tax=Nyssa sin... [more]
A0A8J2X4G0_9STRA1.060e-969.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5G690_9STRA1.440e-965.12Structural maintenance of chromosomes protein 6 n=... [more]
A0A2C9LXU8_BIOGL1.940e-965.12Structural maintenance of chromosomes protein 6 n=... [more]
UPI00065C06D62.650e-962.79structural maintenance of chromosomes protein 6 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 111..146
e-value: 2.3E-8
score: 34.8
NoneNo IPR availableGENE3D3.40.50.300coord: 108..147
e-value: 3.4E-10
score: 41.5
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 88..146
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 88..146
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 108..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1794contigH-paniculata_contig1794:16488..23204 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1794.4313.1mRNA_H-paniculata_contig1794.4313.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1794 16488..23204 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1794.4313.1 ID=prot_H-paniculata_contig1794.4313.1|Name=mRNA_H-paniculata_contig1794.4313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
GKGKGKGRADAGTASNEHDDNAMDDDDESFAERVGQMEALARQLVPGDNI
DHDHQDEEQEERPDRFAGGSKENSLAATSNGQTKGHAKREPDKGKSKCKD
HQGPQAGIVKKISVSNFMCHRKLSISLGKHVNFINGSNGSGKSAILA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR027132SMC6
IPR027417P-loop_NTPase