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Homology
BLAST of mRNA_H-paniculata_contig10660.429.1 vs. uniprot
Match: D8LRG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRG0_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 1.220e-12 Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 2
Query: 110 SALRMLTVGAAALSATPGSNASL--SAMDLLQSTQNPRRQQIVSKQDIYLEDRSAGRLQNTK-EHLAPSTV-DKWQGFYAAEVAAFSC 361
SA++ +T A +A P + AS S +DLL + + Q V+KQDI+LE+RSAGRLQNT+ EHLAPS D+WQG+Y+AEVAAFSC
Sbjct: 4 SAIKCITAATLAFAA-PSAAASRNGSGLDLLHNVGG--KNQRVAKQDIWLEERSAGRLQNTRQEHLAPSIFFDQWQGYYSAEVAAFSC 88
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-18_004390.1 |
| Exons | 3 |
| Model size | 1734 |
| Cds size | 267 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10660.429.1 >prot_H-paniculata_contig10660.429.1 ID=prot_H-paniculata_contig10660.429.1|Name=mRNA_H-paniculata_contig10660.429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MTGNSALRMLTVGAAALSATPGSNASLSAMDLLQSTQNPRRQQIVSKQDI
YLEDRSAGRLQNTKEHLAPSTVDKWQGFYAAEVAAFSC* back to topmRNA from alignment at H-paniculata_contig10660:3255..5754+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10660.429.1 ID=mRNA_H-paniculata_contig10660.429.1|Name=mRNA_H-paniculata_contig10660.429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2500bp|location=Sequence derived from alignment at H-paniculata_contig10660:3255..5754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAATTGGTGACACCCCCCCCCCCCAGCATACCCAGTACTACCAGCAC
CAACACATCACTCGCAGCATATCTCAAGACCTCATCTCGTGCTAAACATG
ACTGGAAACTCTGCCTTGCGAATGCTGACAGTGGGAGCTGCTGCACTGAG
CGCTACGCCAGGATCGAATGCTTCTTTGAGTGCGATGGACTTGCTCCAAT
CAACTCAAAACCCTAGGAGACAGCAGATCGGTAAGGAAAGCCCTGCACAC
CCTGGCAAACAAGAGCTTCTTTATGTGCACGTGACACACGGACACTCAGC
ATTGACTCTCGATTTTTGTTGTGTCTCCTTTCACATCTGCTCAAATGTGT
ATTCGTTTGTCGCTAAAGTTGTTGGTGCACTCACAAGGTTTTGCGTTCAT
TTTTCGGTAGCTTGTACCCCCGAGCATCTGCCTTGAACCTGCGTTTGCCG
TGTACGAATTTTCTCGGAGTGTTGCACTCGCGGACAGTTGGGGTGCACAG
CAGTGAGCGGAACGTTTTCTCGTGGTCATGAAGTCTAATGCGTGCAAGTT
TGCTCTATGGCGAAATCACCTGAACTTACCTATGTAGTATGTATCATGCC
GGGTGGGGTGTGTCACTATCCACCCCCTGTGAATCATCTCACAACGATGT
CATGGAGTTTTGAAATTGGTAAGTGAGGGTCTTGTGTGTTGTGATTTTGC
TGTCGTTGGGCAACTTGACCAAATAAGAAAGTGGGTCGTTTTGCTATCTA
CCCTACTGTACTTGCGAAGCTTCTGCCGTGGTCTATGGTGATGGCGCTTG
CTTCGCAGCTTCATAGTAGCCGAGTATCACACCTGTGTTATACTTCAATC
CGAACTGTGCGAAGTCTAGGTGATACACTCGACTATATTACATACGAAGT
TAACATTCGATCCTGTGGAACTGATGCGATATTTTCCTCTTGTACCGTTA
TCGATCCTGTATGATTCACAGTTTCGAAGCAAGATATCTACTTGGAGGAC
AGGAGTGCAGGACGACTCCAAAACACAAAAGAACACCTCGCTCCCTCGAC
AGTCGACAAGTGGCAGGGCTTTTACGCGGCGGAAGTGGCTGCGTTTTCGT
GTTGATTGTATTACATCAGATCGCCTCTCCTGAGCATGATGGAAGGCACA
GCGGTGAAAATTATAGGGCCTAGTCTTTTTCTGTACACTGTACTGACTGT
AGACAACTTGTCCTCTCTTATCACATGTAGTGTCGTTATGTAGCAGCATA
AAATTTACTGTTCGTTTGTTTTCAGTCTCATGGTTATAGCGGGCGTTTCA
TTAACCGTTGTCAAGTGACACGAAACGTCCCGCAGTCTTATTTTCTTTCG
TATTTACTCTGCCCGTACTGCCGGCGGGGTGTTTCGGTATTCAGCAGCAA
TCCGATGGGCATCGCAGTTTCCGTTGTAACTTTAGGGTGGTGAAATTGCC
CGCCTGACTGTACTGGTGACCTGACTGGTTGACCACATGAGCATTGAATA
TCAGGGCAAGAAGGAATCTGTGATTCAAGTAAGTTACAGTTGCAGTTTGG
TCCTCGATTGTAGCAACTTCATCTATTCCTGTGTCGATGCGCGGATGAAT
ACGACACCTGCACCCTTGGCCAAATCAGGTCAAATAGGGAAGTTGGGGTG
GCGTGTCGTTAGCTAAAAAAAAATAGGGGTGTTAGCTTTCTTGAATATGT
GTGAAGTGGCGTATGTGCGTGTCTCACGTTGTTTACTTTCGCACGATCCG
TGCCTGTCCTGTGTCCGTTTTGATGTAGCACTATTTCGGTGCATGGTACA
TGAATGTGTCGTGCCCGAGGTACCTCGAGGGTTGAATGATGGTTTTATGG
CTCTGTATTTTCTAGGTTATATGTGGTATGTACATACAATGTAGATATTT
TGAGTGTTTTGAGTTGGGACGGATTGTGGTGCGGCAAGTATTGTAGGTGC
GATTAAGAACGAGGAAAAATATAAATGTATTTGGAACATGAATGACTAAT
GCAAGAAAAATAAATGTCCTTGAGGTGGGGAATACAGCTGTTGTTGCTGC
TACTGCTGGGGTCTGTACTGTGATCTTGACTTGGCATGTGGCGCAAAAGT
CTAGTGGATTGACAGTTACAGTCATAGCTATTCATGAACGAGTCTAAGCC
CTAACGGGAAGGGCACGGCAAGAGGGTAACCTTTGCCGATGACCGGACGG
AAGTGTGATCAAGGGTTTTAACGTGTGAGGATTCTGTACTTTCTAGTGCA
ATCTAAAACCGTATGGCAAAACGGACAAGTCACGTACAATGGCTATCTCA
CATAATTCCATCGGTTTATAAGTGATGAACCGAAGGAAGACCGATACGGT
TGTATAACCCGTGTTTTGCGGGGATCGGAAATCGGGGCTTGGTACTTGGT
ATCGAGTCGTGGGTTTAAGCTCCTCCCCTCACAACGCTTCCGAGTGGTGC
ATACAGAGGGTGCACACTCTGGGGTGGATATAGCTATTCATTATGAGCTC
back to topCoding sequence (CDS) from alignment at H-paniculata_contig10660:3255..5754+ >mRNA_H-paniculata_contig10660.429.1 ID=mRNA_H-paniculata_contig10660.429.1|Name=mRNA_H-paniculata_contig10660.429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig10660:3255..5754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGGAAACTCTGCCTTGCGAATGCTGACAGTGGGAGCTGCTGCACT
GAGCGCTACGCCAGGATCGAATGCTTCTTTGAGTGCGATGGACTTGCTCC
AATCAACTCAAAACCCTAGGAGACAGCAGATCGATGACTGGAAACTCTGC
CTTGCGAATGCTGACAGTGGGAGCTGCTGCACTGAGCGCTACGCCAGGAT
CGAATGCTTCTTTGAGTGCGATGGACTTGCTCCAATCAACTCAAAACCCT
AGGAGACAGCAGATCGTTTCGAAGCAAGATATCTACTTGGAGGACAGGAG
TGCAGGACGACTCCAAAACACAAAAGAACACCTCGCTCCCTCGACAGTCG
ACAAGTGGCAGGGCTTTTACGCGGCGGAAGTGGCTGCGTTTTCGTGTTGA
TTTCGAAGCAAGATATCTACTTGGAGGACAGGAGTGCAGGACGACTCCAA
AACACAAAAGAACACCTCGCTCCCTCGACAGTCGACAAGTGGCAGGGCTT
TTACGCGGCGGAAGTGGCTGCGTTTTCGTGTTGA back to top
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