mRNA_H-paniculata_contig17884.4289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17884.4289.1
Unique NamemRNA_H-paniculata_contig17884.4289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17884.4289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17884contigH-paniculata_contig17884:2597..3472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929395.7247126-CDS-H-paniculata_contig17884:2596..26741622929395.7247126-CDS-H-paniculata_contig17884:2596..2674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17884 2597..2674 +
1691480843.5018744-CDS-H-paniculata_contig17884:2596..26741691480843.5018744-CDS-H-paniculata_contig17884:2596..2674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17884 2597..2674 +
1622929395.7360508-CDS-H-paniculata_contig17884:3235..34721622929395.7360508-CDS-H-paniculata_contig17884:3235..3472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17884 3236..3472 +
1691480843.5097072-CDS-H-paniculata_contig17884:3235..34721691480843.5097072-CDS-H-paniculata_contig17884:3235..3472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17884 3236..3472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17884.4289.1prot_H-paniculata_contig17884.4289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17884 2597..3472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17884.4289.1

>prot_H-paniculata_contig17884.4289.1 ID=prot_H-paniculata_contig17884.4289.1|Name=mRNA_H-paniculata_contig17884.4289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
NIDYDDPGYLRVLEPGGKEATWPEIGDVGASLSHSNIYYDYLQYQAYVLF
NGLSVDTDPVLGDYVVWIDRGTANGNYKMTARSNGELLWVEEGFLNSEGE
SPRYA
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mRNA from alignment at H-paniculata_contig17884:2597..3472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17884.4289.1 ID=mRNA_H-paniculata_contig17884.4289.1|Name=mRNA_H-paniculata_contig17884.4289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at H-paniculata_contig17884:2597..3472+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATTGACTACGACGACCCAGGATATTTGAGGGTCCTTGAGCCTGGAGG
AAAGGAAGCCACCTGGCCCGAAATCGGGGTGAGTCAGTCAGTCACCAGGC
GTAACATCAGACCACCGCTACAGAAAGAGTTTTACGCGAAAACTAGCCTG
TTACTCAAGGCAGCTGGTTGATGATGTTGTCCCGTAGTACAATAGATGGA
GGTTGTCATCCTTGCATACCACATGACCGGCGTTATCTGTCCACGTGTGA
ACGCGTGCTCTGTCGAAAAGATAGCTTACTGCAGAGTGCACGATCGGTCA
GACGTTATATGTTGGAGGTGTCATGGTATCAGCTATTATTCTCGTGTACG
ATGGATGGAACAAGTTAACCCGCTTGGTCGCGTCAGACTATAACCTAACT
CTGTCCATTTCTTCTTACAACCTTGCCGGCTTCCCCGCGGAGCCCCAGGC
TCATCCAAACTGTGGAAGGGCGGGGTGTAGTTTGCGTTTCACCACGCAGC
CTTCCGTTTTCATCGTTTTTGCCGCGAAAAGGATGCACGAAAGGGCCACT
AATAATTGTTTTATCCCACGATGGAGTAACGGCGCTGTTAATTTCGCTGC
GCCAAGTGACCTGCTGTCCATGCATTGAACTTGTTGCAGGATGTCGGGGC
GAGCCTATCCCACAGTAACATATACTACGATTACCTCCAGTATCAAGCCT
ATGTGCTGTTCAATGGCCTGTCTGTGGACACCGATCCGGTACTTGGAGAC
TACGTTGTTTGGATAGATCGTGGTACTGCGAACGGCAACTACAAGATGAC
TGCTCGTTCAAACGGGGAACTCCTGTGGGTGGAGGAAGGCTTCCTAAATT
CTGAAGGCGAAAGTCCGCGATACGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig17884:2597..3472+

>mRNA_H-paniculata_contig17884.4289.1 ID=mRNA_H-paniculata_contig17884.4289.1|Name=mRNA_H-paniculata_contig17884.4289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig17884:2597..3472+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATTGACTACGACGACCCAGGATATTTGAGGGTCCTTGAGCCTGGAGG
AAAGGAAGCCACCTGGCCCGAAATCGGGAATATTGACTACGACGACCCAG
GATATTTGAGGGTCCTTGAGCCTGGAGGAAAGGAAGCCACCTGGCCCGAA
ATCGGGGATGTCGGGGCGAGCCTATCCCACAGTAACATATACTACGATTA
CCTCCAGTATCAAGCCTATGTGCTGTTCAATGGCCTGTCTGTGGACACCG
ATCCGGTACTTGGAGACTACGTTGTTTGGATAGATCGTGGTACTGCGAAC
GGCAACTACAAGATGACTGCTCGTTCAAACGGGGAACTCCTGTGGGTGGA
GGAAGGCTTCCTAAATTCTGAAGGCGAAAGTCCGCGATACGCAGATGTCG
GGGCGAGCCTATCCCACAGTAACATATACTACGATTACCTCCAGTATCAA
GCCTATGTGCTGTTCAATGGCCTGTCTGTGGACACCGATCCGGTACTTGG
AGACTACGTTGTTTGGATAGATCGTGGTACTGCGAACGGCAACTACAAGA
TGACTGCTCGTTCAAACGGGGAACTCCTGTGGGTGGAGGAAGGCTTCCTA
AATTCTGAAGGCGAAAGTCCGCGATACGCA
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