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Homology
BLAST of mRNA_H-paniculata_contig17873.4282.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 6.610e-12 Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 2
Query: 467 SRRFVKMIDGMPTGAWRAVLRELDEVE------GAAALAATPNTGRAVSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCTTAAIRAC 733
SR FV I GM WR V+REL+E E G A T + VS+H Y SC+ H+AK RWREA+A+ RM A GV PN FC A + AC
Sbjct: 111 SRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 205
BLAST of mRNA_H-paniculata_contig17873.4282.1 vs. uniprot
Match: A0A6H5K890_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K890_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 7.290e-6 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 2
Query: 590 VSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCTTAAIRAC 733
VS+H Y SC+ H+AK RWREA+A+ RM A GV PN FC A + AC
Sbjct: 137 VSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 184
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 84.0 |
| Seed ortholog evalue | 4e-13 |
| Seed eggNOG ortholog | 2880.D7G1L0 |
| Hectar predicted targeting category | mitochondrion |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 2776 |
| Cds size | 2664 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17873.4282.1 >prot_H-paniculata_contig17873.4282.1 ID=prot_H-paniculata_contig17873.4282.1|Name=mRNA_H-paniculata_contig17873.4282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=888bp
MHSLGNAAVSRAVSGSAWLLTSPQQLHSRSQFSVSSRRYSSSSSSCCSST ITNNSTTFTRRVSEPQLCLSTHLPAPIQAKNEPSSRSRKGPQQLSTGRRG EREVRGIADRIRYSGTSYSRRFVKMIDGMPTGAWRAVLRELDEVEGAAAL AATPNTGRAVSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCT TAAIRACGEAGQWEKALELLEAVGAEGMAPLSVVTFNTVIKACDKGGKWE MAVRLLAEMPAAGVTPSVISYNSVITACGNGGQWAKAMELLHNMPSVGLT PDNITYNAAITACDRGGEWEKALALLGEMRRAGVPLDKFTYCSAIKACGN GQQVEKAMEFLAEMKAEGIPLCEIAYNSAIYACAQGGKWEAALELLREMQ AAVVWPNVISYNSAIYACGNGGEWQRALELVQEMRTAGIVPNARTYGTAI TACDRAGQWERALQILGEMRTAGLAPDPIAYTAAISACGSRGKWEKSVEL LAEMRATGLPVTVFAYSAAMTACRNGGYWEKALAMLDDMRAEGTKPNVVV YNSAISACDSGGQWTKALDLLAEMKDTPGVTPNIVTYNAVISACCSAGCW KEGLLLIDGIEAAGLVPNHITYSTAITGCGNAGRWNEALAVLERMRQSET RLDVTAYSAVIKACDKCCKWEEGLAIFDEARGSEIELDTILFNAAITAYG AWGKWEKALELFDEMKTNAYPNVEIDTITYNAVMDACGSSRQWETALKLF EEMVDAGMAIGVITYNAAMKACGHAGQVEKALQLLKDMQATGLEPDAFSY STVIAACGSIGLWENALALLEQNRKSGATEVSVVTYNAAINACAGAGQRQ RAVKLLEEMREAGVQPDTLTYNSVVRAFETENKGQGG* back to topmRNA from alignment at H-paniculata_contig17873:1909..4777- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig17873.4282.1 ID=mRNA_H-paniculata_contig17873.4282.1|Name=mRNA_H-paniculata_contig17873.4282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2869bp|location=Sequence derived from alignment at H-paniculata_contig17873:1909..4777- (Halopteris paniculata Hal_grac_a_UBK monoicous) GCTTATCATGTGTTAGAGTACCGCCTGGACCTTGGTTGGTCGATTGTGGC
TTCGCTGGCTGGCTGTTTGATCTAGCACAGCTTTTCACAGCCTTTTTATT
CAGATATTCACCATGCATTCCCTTGGAAATGCTGCAGTGTCCCGAGCGGT
GTCAGGCAGTGCTTGGTTACTCACGTCTCCTCAGCAACTCCACAGCCGAT
CCCAGTTCAGCGTCAGTTCACGCAGATACAGCAGCAGCAGCAGCAGTTGC
TGCAGCTCCACCATCACCAACAACAGCACGACGTTCACGCGGCGGGTAAG
TGAACCACAACTTTGCCTCTCCACCCACCTACCCGCACCGATTCAAGCTA
AGTGCGTCAGTGGCAATGGTGATAGAGCTGCAGAAGCGCGAAGACGCGTT
CTGCTTCGATTGCCTTCCGACCACGGAGCTGCCGCCCCACGAAGGAACGA
ACCATCGTCCCGTAGTAGGAAAGGTCCACAGCAACTGTCGACGGGCAGAA
GAGGAGAAAGAGAAGTTCGAGGAATAGCTGATAGAATTCGCTACAGCGGT
ACCTCCTACTCCCGAAGATTTGTGAAAATGATAGATGGCATGCCGACCGG
TGCGTGGAGGGCTGTACTGAGGGAGCTAGATGAGGTGGAGGGAGCTGCTG
CGCTAGCGGCCACGCCGAACACCGGTCGAGCGGTGTCTACCCACATGTAC
TGCAGCTGTATTAGACACATGGCGAAAGGGAAAAGGTGGAGGGAAGCGGT
GGCAATCCTTCATCGCATGCGGGCGGCCGGCGTGCCTCCGAACGACTTTT
GTACGACGGCGGCGATCCGGGCGTGCGGGGAAGCTGGACAATGGGAGAAG
GCATTGGAGTTGTTGGAAGCGGTGGGAGCAGAAGGGATGGCGCCGCTAAG
TGTTGTGACTTTCAACACCGTAATCAAGGCTTGTGACAAGGGAGGGAAGT
GGGAAATGGCGGTGCGGCTGCTCGCGGAGATGCCGGCGGCTGGGGTAACC
CCTAGCGTGATATCGTATAATTCGGTCATCACCGCGTGCGGAAATGGAGG
CCAGTGGGCGAAAGCCATGGAGTTGCTGCACAACATGCCGTCGGTGGGGT
TAACCCCGGATAACATCACCTACAACGCGGCCATCACGGCATGCGACAGG
GGCGGTGAGTGGGAGAAAGCCCTTGCATTGTTGGGTGAGATGCGAAGGGC
GGGCGTGCCACTGGATAAATTTACGTACTGTTCGGCCATCAAGGCGTGTG
GGAACGGGCAGCAAGTGGAGAAAGCGATGGAGTTTCTCGCCGAGATGAAA
GCAGAGGGTATTCCGCTTTGCGAGATTGCGTACAACAGCGCAATTTACGC
TTGCGCGCAGGGGGGCAAGTGGGAGGCCGCGCTAGAGTTGCTACGGGAGA
TGCAGGCGGCTGTGGTGTGGCCAAATGTGATCAGCTATAACTCGGCGATC
TACGCATGCGGCAACGGCGGGGAGTGGCAAAGGGCACTGGAGCTTGTTCA
AGAGATGAGGACGGCGGGAATAGTGCCCAACGCGCGTACGTACGGAACGG
CCATCACCGCCTGTGATCGCGCCGGGCAGTGGGAGAGAGCTTTACAGATT
CTTGGCGAAATGCGGACAGCTGGGCTTGCGCCGGACCCGATCGCTTACAC
CGCGGCCATCTCGGCGTGCGGCAGCAGAGGTAAGTGGGAGAAATCGGTGG
AGTTGCTTGCCGAAATGCGGGCCACGGGCTTACCTGTCACGGTGTTCGCT
TACAGCGCGGCGATGACGGCCTGCCGCAATGGCGGGTACTGGGAGAAGGC
TCTGGCTATGCTGGACGACATGCGCGCAGAGGGGACGAAGCCAAACGTGG
TCGTCTACAATTCGGCGATCTCCGCGTGTGACAGCGGTGGACAATGGACG
AAGGCCTTGGATTTGCTAGCCGAGATGAAGGATACGCCGGGCGTAACGCC
CAACATCGTGACGTACAACGCTGTCATCTCAGCGTGCTGCAGTGCTGGGT
GTTGGAAGGAGGGGCTGCTCCTCATTGACGGCATTGAAGCAGCGGGACTG
GTACCCAACCACATCACCTATAGCACCGCCATAACTGGGTGCGGAAATGC
CGGCCGATGGAACGAGGCATTGGCTGTTCTAGAACGAATGAGACAGAGCG
AGACACGGCTCGACGTGACCGCATACAGCGCGGTAATCAAGGCGTGTGAT
AAATGCTGCAAGTGGGAGGAAGGGCTGGCTATTTTTGACGAGGCGCGGGG
GTCGGAGATAGAGCTGGACACGATCTTGTTCAACGCGGCTATCACCGCAT
ACGGTGCCTGGGGGAAATGGGAGAAAGCCCTGGAGTTGTTTGACGAGATG
AAGACGAACGCCTATCCAAACGTGGAAATAGACACTATCACGTACAACGC
GGTCATGGACGCGTGCGGGAGCTCGCGGCAATGGGAAACAGCTCTGAAAC
TTTTCGAGGAGATGGTGGATGCGGGCATGGCCATTGGCGTGATCACATAC
AACGCGGCGATGAAAGCCTGCGGACACGCGGGTCAGGTAGAAAAGGCGTT
GCAGCTGCTGAAAGACATGCAAGCCACAGGACTCGAGCCGGACGCCTTCA
GTTACAGCACAGTCATCGCAGCCTGTGGAAGCATCGGATTGTGGGAAAAC
GCCTTGGCTCTGCTAGAACAAAACCGAAAAAGTGGCGCCACCGAAGTGTC
GGTGGTCACGTACAACGCGGCGATCAACGCTTGCGCCGGTGCCGGCCAGC
GCCAACGAGCGGTTAAGCTTCTCGAGGAAATGCGAGAGGCTGGCGTTCAG
CCCGATACCCTCACGTACAACTCGGTCGTACGAGCTTTCGAGACAGAGAA
TAAAGGTCAGGGTGGATGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig17873:1909..4777- >mRNA_H-paniculata_contig17873.4282.1 ID=mRNA_H-paniculata_contig17873.4282.1|Name=mRNA_H-paniculata_contig17873.4282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5328bp|location=Sequence derived from alignment at H-paniculata_contig17873:1909..4777- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCATTCCCTTGGAAATGCTGCAGTGTCCCGAGCGGTGTCAGGCAGTGC TTGGTTACTCACGTCTCCTCAGCAACTCCACAGCCGATCCCAGTTCAGCG TCAGTTCACGCAGATACAGCAGCAGCAGCAGCAGTTGCTGCAGCTCCACC ATCACCAACAACAGCACGACGTTCACGCGGCGGGTAAGTGAACCACAACT TTGCCTCTCCACCCACCTACCCGCACCGATTCAAGCTAAATGCATTCCCT TGGAAATGCTGCAGTGTCCCGAGCGGTGTCAGGCAGTGCTTGGTTACTCA CGTCTCCTCAGCAACTCCACAGCCGATCCCAGTTCAGCGTCAGTTCACGC AGATACAGCAGCAGCAGCAGCAGTTGCTGCAGCTCCACCATCACCAACAA CAGCACGACGTTCACGCGGCGGGTAAGTGAACCACAACTTTGCCTCTCCA CCCACCTACCCGCACCGATTCAAGCTAAGAACGAACCATCGTCCCGTAGT AGGAAAGGTCCACAGCAACTGTCGACGGGCAGAAGAGGAGAAAGAGAAGT TCGAGGAATAGCTGATAGAATTCGCTACAGCGGTACCTCCTACTCCCGAA GATTTGTGAAAATGATAGATGGCATGCCGACCGGTGCGTGGAGGGCTGTA CTGAGGGAGCTAGATGAGGTGGAGGGAGCTGCTGCGCTAGCGGCCACGCC GAACACCGGTCGAGCGGTGTCTACCCACATGTACTGCAGCTGTATTAGAC ACATGGCGAAAGGGAAAAGGTGGAGGGAAGCGGTGGCAATCCTTCATCGC ATGCGGGCGGCCGGCGTGCCTCCGAACGACTTTTGTACGACGGCGGCGAT CCGGGCGTGCGGGGAAGCTGGACAATGGGAGAAGGCATTGGAGTTGTTGG AAGCGGTGGGAGCAGAAGGGATGGCGCCGCTAAGTGTTGTGACTTTCAAC ACCGTAATCAAGGCTTGTGACAAGGGAGGGAAGTGGGAAATGGCGGTGCG GCTGCTCGCGGAGATGCCGGCGGCTGGGGTAACCCCTAGCGTGATATCGT ATAATTCGGTCATCACCGCGTGCGGAAATGGAGGCCAGTGGGCGAAAGCC ATGGAGTTGCTGCACAACATGCCGTCGGTGGGGTTAACCCCGGATAACAT CACCTACAACGCGGCCATCACGGCATGCGACAGGGGCGGTGAGTGGGAGA AAGCCCTTGCATTGTTGGGTGAGATGCGAAGGGCGGGCGTGCCACTGGAT AAATTTACGTACTGTTCGGCCATCAAGGCGTGTGGGAACGGGCAGCAAGT GGAGAAAGCGATGGAGTTTCTCGCCGAGATGAAAGCAGAGGGTATTCCGC TTTGCGAGATTGCGTACAACAGCGCAATTTACGCTTGCGCGCAGGGGGGC AAGTGGGAGGCCGCGCTAGAGTTGCTACGGGAGATGCAGGCGGCTGTGGT GTGGCCAAATGTGATCAGCTATAACTCGGCGATCTACGCATGCGGCAACG GCGGGGAGTGGCAAAGGGCACTGGAGCTTGTTCAAGAGATGAGGACGGCG GGAATAGTGCCCAACGCGCGTACGTACGGAACGGCCATCACCGCCTGTGA TCGCGCCGGGCAGTGGGAGAGAGCTTTACAGATTCTTGGCGAAATGCGGA CAGCTGGGCTTGCGCCGGACCCGATCGCTTACACCGCGGCCATCTCGGCG TGCGGCAGCAGAGGTAAGTGGGAGAAATCGGTGGAGTTGCTTGCCGAAAT GCGGGCCACGGGCTTACCTGTCACGGTGTTCGCTTACAGCGCGGCGATGA CGGCCTGCCGCAATGGCGGGTACTGGGAGAAGGCTCTGGCTATGCTGGAC GACATGCGCGCAGAGGGGACGAAGCCAAACGTGGTCGTCTACAATTCGGC GATCTCCGCGTGTGACAGCGGTGGACAATGGACGAAGGCCTTGGATTTGC TAGCCGAGATGAAGGATACGCCGGGCGTAACGCCCAACATCGTGACGTAC AACGCTGTCATCTCAGCGTGCTGCAGTGCTGGGTGTTGGAAGGAGGGGCT GCTCCTCATTGACGGCATTGAAGCAGCGGGACTGGTACCCAACCACATCA CCTATAGCACCGCCATAACTGGGTGCGGAAATGCCGGCCGATGGAACGAG GCATTGGCTGTTCTAGAACGAATGAGACAGAGCGAGACACGGCTCGACGT GACCGCATACAGCGCGGTAATCAAGGCGTGTGATAAATGCTGCAAGTGGG AGGAAGGGCTGGCTATTTTTGACGAGGCGCGGGGGTCGGAGATAGAGCTG GACACGATCTTGTTCAACGCGGCTATCACCGCATACGGTGCCTGGGGGAA ATGGGAGAAAGCCCTGGAGTTGTTTGACGAGATGAAGACGAACGCCTATC CAAACGTGGAAATAGACACTATCACGTACAACGCGGTCATGGACGCGTGC GGGAGCTCGCGGCAATGGGAAACAGCTCTGAAACTTTTCGAGGAGATGGT GGATGCGGGCATGGCCATTGGCGTGATCACATACAACGCGGCGATGAAAG CCTGCGGACACGCGGGTCAGGTAGAAAAGGCGTTGCAGCTGCTGAAAGAC ATGCAAGCCACAGGACTCGAGCCGGACGCCTTCAGTTACAGCACAGTCAT CGCAGCCTGTGGAAGCATCGGATTGTGGGAAAACGCCTTGGCTCTGCTAG AACAAAACCGAAAAAGTGGCGCCACCGAAGTGTCGGTGGTCACGTACAAC GCGGCGATCAACGCTTGCGCCGGTGCCGGCCAGCGCCAACGAGCGGTTAA GCTTCTCGAGGAAATGCGAGAGGCTGGCGTTCAGCCCGATACCCTCACGT ACAACTCGGTCGTACGAGCTTTCGAGACAGAGAATAAAGGTCAGGGTGGA TGAGAACGAACCATCGTCCCGTAGTAGGAAAGGTCCACAGCAACTGTCGA CGGGCAGAAGAGGAGAAAGAGAAGTTCGAGGAATAGCTGATAGAATTCGC TACAGCGGTACCTCCTACTCCCGAAGATTTGTGAAAATGATAGATGGCAT GCCGACCGGTGCGTGGAGGGCTGTACTGAGGGAGCTAGATGAGGTGGAGG GAGCTGCTGCGCTAGCGGCCACGCCGAACACCGGTCGAGCGGTGTCTACC CACATGTACTGCAGCTGTATTAGACACATGGCGAAAGGGAAAAGGTGGAG GGAAGCGGTGGCAATCCTTCATCGCATGCGGGCGGCCGGCGTGCCTCCGA ACGACTTTTGTACGACGGCGGCGATCCGGGCGTGCGGGGAAGCTGGACAA TGGGAGAAGGCATTGGAGTTGTTGGAAGCGGTGGGAGCAGAAGGGATGGC GCCGCTAAGTGTTGTGACTTTCAACACCGTAATCAAGGCTTGTGACAAGG GAGGGAAGTGGGAAATGGCGGTGCGGCTGCTCGCGGAGATGCCGGCGGCT GGGGTAACCCCTAGCGTGATATCGTATAATTCGGTCATCACCGCGTGCGG AAATGGAGGCCAGTGGGCGAAAGCCATGGAGTTGCTGCACAACATGCCGT CGGTGGGGTTAACCCCGGATAACATCACCTACAACGCGGCCATCACGGCA TGCGACAGGGGCGGTGAGTGGGAGAAAGCCCTTGCATTGTTGGGTGAGAT GCGAAGGGCGGGCGTGCCACTGGATAAATTTACGTACTGTTCGGCCATCA AGGCGTGTGGGAACGGGCAGCAAGTGGAGAAAGCGATGGAGTTTCTCGCC GAGATGAAAGCAGAGGGTATTCCGCTTTGCGAGATTGCGTACAACAGCGC AATTTACGCTTGCGCGCAGGGGGGCAAGTGGGAGGCCGCGCTAGAGTTGC TACGGGAGATGCAGGCGGCTGTGGTGTGGCCAAATGTGATCAGCTATAAC TCGGCGATCTACGCATGCGGCAACGGCGGGGAGTGGCAAAGGGCACTGGA GCTTGTTCAAGAGATGAGGACGGCGGGAATAGTGCCCAACGCGCGTACGT ACGGAACGGCCATCACCGCCTGTGATCGCGCCGGGCAGTGGGAGAGAGCT TTACAGATTCTTGGCGAAATGCGGACAGCTGGGCTTGCGCCGGACCCGAT CGCTTACACCGCGGCCATCTCGGCGTGCGGCAGCAGAGGTAAGTGGGAGA AATCGGTGGAGTTGCTTGCCGAAATGCGGGCCACGGGCTTACCTGTCACG GTGTTCGCTTACAGCGCGGCGATGACGGCCTGCCGCAATGGCGGGTACTG GGAGAAGGCTCTGGCTATGCTGGACGACATGCGCGCAGAGGGGACGAAGC CAAACGTGGTCGTCTACAATTCGGCGATCTCCGCGTGTGACAGCGGTGGA CAATGGACGAAGGCCTTGGATTTGCTAGCCGAGATGAAGGATACGCCGGG CGTAACGCCCAACATCGTGACGTACAACGCTGTCATCTCAGCGTGCTGCA GTGCTGGGTGTTGGAAGGAGGGGCTGCTCCTCATTGACGGCATTGAAGCA GCGGGACTGGTACCCAACCACATCACCTATAGCACCGCCATAACTGGGTG CGGAAATGCCGGCCGATGGAACGAGGCATTGGCTGTTCTAGAACGAATGA GACAGAGCGAGACACGGCTCGACGTGACCGCATACAGCGCGGTAATCAAG GCGTGTGATAAATGCTGCAAGTGGGAGGAAGGGCTGGCTATTTTTGACGA GGCGCGGGGGTCGGAGATAGAGCTGGACACGATCTTGTTCAACGCGGCTA TCACCGCATACGGTGCCTGGGGGAAATGGGAGAAAGCCCTGGAGTTGTTT GACGAGATGAAGACGAACGCCTATCCAAACGTGGAAATAGACACTATCAC GTACAACGCGGTCATGGACGCGTGCGGGAGCTCGCGGCAATGGGAAACAG CTCTGAAACTTTTCGAGGAGATGGTGGATGCGGGCATGGCCATTGGCGTG ATCACATACAACGCGGCGATGAAAGCCTGCGGACACGCGGGTCAGGTAGA AAAGGCGTTGCAGCTGCTGAAAGACATGCAAGCCACAGGACTCGAGCCGG ACGCCTTCAGTTACAGCACAGTCATCGCAGCCTGTGGAAGCATCGGATTG TGGGAAAACGCCTTGGCTCTGCTAGAACAAAACCGAAAAAGTGGCGCCAC CGAAGTGTCGGTGGTCACGTACAACGCGGCGATCAACGCTTGCGCCGGTG CCGGCCAGCGCCAACGAGCGGTTAAGCTTCTCGAGGAAATGCGAGAGGCT GGCGTTCAGCCCGATACCCTCACGTACAACTCGGTCGTACGAGCTTTCGA GACAGAGAATAAAGGTCAGGGTGGATGA 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