mRNA_H-paniculata_contig17871.4281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17871.4281.1
Unique NamemRNA_H-paniculata_contig17871.4281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17871.4281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17871contigH-paniculata_contig17871:352..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929394.9946163-CDS-H-paniculata_contig17871:351..8881622929394.9946163-CDS-H-paniculata_contig17871:351..888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17871 352..888 +
1691480843.2572632-CDS-H-paniculata_contig17871:351..8881691480843.2572632-CDS-H-paniculata_contig17871:351..888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17871 352..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17871.4281.1prot_H-paniculata_contig17871.4281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17871 352..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17871.4281.1

>prot_H-paniculata_contig17871.4281.1 ID=prot_H-paniculata_contig17871.4281.1|Name=mRNA_H-paniculata_contig17871.4281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
SNGRKYSQNSKLMDTQLTNVNPGTRSFQPQVPLSAPICSMFVLTATLRGA
AAAPSMSQQPERHQIHTSKCESPFSYKYRVVCTEASRQPVVFSFPLEGLD
KGLIPMLEPKKMCSLERLLTSSIKARKRTTIQIQNLQVQHFEHIHTDRET
GGQLVATVKKKKTQIASTFTNVPSHATKS
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mRNA from alignment at H-paniculata_contig17871:352..888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17871.4281.1 ID=mRNA_H-paniculata_contig17871.4281.1|Name=mRNA_H-paniculata_contig17871.4281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig17871:352..888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAATGGGAGAAAATACTCCCAAAATTCAAAGCTCATGGACACCCAATT
AACAAACGTGAATCCGGGTACGCGTTCATTTCAGCCGCAGGTTCCTCTAT
CTGCACCTATCTGCAGCATGTTCGTACTGACTGCCACTCTCAGGGGGGCA
GCAGCCGCCCCGTCCATGTCACAGCAACCAGAACGACACCAAATTCACAC
GTCAAAGTGTGAGTCTCCCTTCAGTTACAAGTACAGGGTGGTTTGTACAG
AGGCATCAAGGCAGCCAGTCGTATTCTCTTTTCCCTTAGAGGGGTTGGAT
AAGGGTTTGATCCCCATGCTCGAACCGAAAAAAATGTGCTCTCTCGAGCG
GTTGCTGACATCCTCAATAAAGGCACGGAAAAGAACAACTATTCAAATAC
AAAACCTACAAGTACAGCATTTCGAGCACATCCACACCGACCGGGAAACA
GGGGGTCAACTTGTGGCAACAGTAAAAAAAAAAAAAACGCAAATTGCATC
CACGTTCACAAATGTGCCCTCTCATGCAACAAAATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig17871:352..888+

>mRNA_H-paniculata_contig17871.4281.1 ID=mRNA_H-paniculata_contig17871.4281.1|Name=mRNA_H-paniculata_contig17871.4281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig17871:352..888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAATGGGAGAAAATACTCCCAAAATTCAAAGCTCATGGACACCCAATT
AACAAACGTGAATCCGGGTACGCGTTCATTTCAGCCGCAGGTTCCTCTAT
CTGCACCTATCTGCAGCATGTTCGTACTGACTGCCACTCTCAGGGGGGCA
GCAGCCGCCCCGTCCATGTCACAGCAACCAGAACGACACCAAATTCACAC
GTCAAAGTGTGAGTCTCCCTTCAGTTACAAGTACAGGGTGGTTTGTACAG
AGGCATCAAGGCAGCCAGTCGTATTCTCTTTTCCCTTAGAGGGGTTGGAT
AAGGGTTTGATCCCCATGCTCGAACCGAAAAAAATGTGCTCTCTCGAGCG
GTTGCTGACATCCTCAATAAAGGCACGGAAAAGAACAACTATTCAAATAC
AAAACCTACAAGTACAGCATTTCGAGCACATCCACACCGACCGGGAAACA
GGGGGTCAACTTGTGGCAACAGTAAAAAAAAAAAAAACGCAAATTGCATC
CACGTTCACAAATGTGCCCTCTCATGCAACAAAATCCAGCAATGGGAGAA
AATACTCCCAAAATTCAAAGCTCATGGACACCCAATTAACAAACGTGAAT
CCGGGTACGCGTTCATTTCAGCCGCAGGTTCCTCTATCTGCACCTATCTG
CAGCATGTTCGTACTGACTGCCACTCTCAGGGGGGCAGCAGCCGCCCCGT
CCATGTCACAGCAACCAGAACGACACCAAATTCACACGTCAAAGTGTGAG
TCTCCCTTCAGTTACAAGTACAGGGTGGTTTGTACAGAGGCATCAAGGCA
GCCAGTCGTATTCTCTTTTCCCTTAGAGGGGTTGGATAAGGGTTTGATCC
CCATGCTCGAACCGAAAAAAATGTGCTCTCTCGAGCGGTTGCTGACATCC
TCAATAAAGGCACGGAAAAGAACAACTATTCAAATACAAAACCTACAAGT
ACAGCATTTCGAGCACATCCACACCGACCGGGAAACAGGGGGTCAACTTG
TGGCAACAGTAAAAAAAAAAAAAACGCAAATTGCATCCACGTTCACAAAT
GTGCCCTCTCATGCAACAAAATCC
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