mRNA_H-paniculata_contig10654.426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10654.426.1
Unique NamemRNA_H-paniculata_contig10654.426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 4.700e-83
Identity = 140/210 (66.67%), Postives = 162/210 (77.14%), Query Frame = 1 
Query:    1 GAGASHEKGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTVVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKSLVRLVVERPVVLFAAKSGR 630
            G+  + +KGVGRGDV+ELYG SGSGKSEVLINVVA+ VMPAWLGGEE+ A FFDNDGRLSILRLEQLL+ KI+ NTTFQVK+ A+GG GG                        L SD+E +L  CL RLRV+RP+ LFELLA++EVLRFEL HRP VV VDGM SF+WQDKMAQSCGG+AVSMQG V K+LVRL +ERPVVLFAAK+G+
Sbjct:   39 GSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKS-ASGGVGG----------GGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNGK 237
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.350e-61
Identity = 115/173 (66.47%), Postives = 132/173 (76.30%), Query Frame = 1 
Query:    1 GAGASHEKGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTVVAVDGMSSFYWQDKM 519
            G   + +KGVGRGDV+ELYG SGSGKSEVLINVVA+ VMPAWLGGEE+ A FFDNDGRLSILRLEQLL+ KI+ NTTFQVK+ A+GG G          XXXXXX         L SD+E +L  CL RLRV+RP+ LFELLA++EVLRFEL HRP VV VDGM SF+WQDK+
Sbjct:   39 GGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKS-ASGGIG----------XXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI00148A5519 (DNA repair protein XRCC2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5519)

HSP 1 Score: 80.1 bits (196), Expect = 2.340e-14
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:   40 DVIELYGTSGSGKSEVLINVVAQHVMP-AW----LGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRP--TVVAVDGMSSFYWQDKMAQSCGGDAVSMQ 555
            DVIEL+GT G+GKSE+L+N+VA  ++P  W    L G++ +  F DND + SILRL  ++  +I  + T +   +A                              L +D+E L+  CL++L +IR ++  ELL +L  L   L   P  +V+ +D +S+FYW DK     GG++++ Q
Sbjct:   35 DVIELFGTEGTGKSEILLNLVAGIILPKTWKSVNLNGKDASVIFIDNDYKFSILRLVTVMENRI--HATLKNAPQAEEN---------------------------LTNDVELLIQKCLSKLSLIRCTNSSELLVTLYSLEQTLLSNPNISVIMIDSISAFYWIDKCN---GGESLAAQ 181
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001CF6073B (DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6073B)

HSP 1 Score: 79.7 bits (195), Expect = 3.750e-14
Identity = 65/203 (32.02%), Postives = 96/203 (47.29%), Query Frame = 1 
Query:   25 GVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRP--TVVAVDGMSSFYWQDKMAQSCGGDAVSMQ----GAVVKSLVRLVVERPVVLFA 615
            G   G+V+ELYGT G+GK+E+L +++ + V+P   GG E    F D D  L +LRL  +L  ++   T     T A    GG                        + SD E  L  CLARL V+  SS  +LL +L  L   L  RP   +V +D +S+FYW D+     GG +++ Q        + L RL+ +  + +FA
Sbjct:   31 GPDHGEVVELYGTEGTGKTELLYHLLCRCVLPVAAGGLEVDVVFVDTDYSLDMLRLVSILDSRLNAGT----HTHAVASEGGSGPALSTSSPS-------------VASD-EAALRSCLARLLVVHCSSSSQLLLTLHFLETSLSSRPGLALVLIDSISAFYWLDRCE---GGASIAKQEEKLSKCAELLGRLLRDYRITVFA 212
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001459174D (DNA repair protein XRCC2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001459174D)

HSP 1 Score: 79.0 bits (193), Expect = 6.110e-14
Identity = 65/207 (31.40%), Postives = 97/207 (46.86%), Query Frame = 1 
Query:   40 DVIELYGTSGSGKSEVLINVVAQHVMP----AW-LGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPT--VVAVDGMSSFYWQDKMAQSCGGDAVSMQ----GAVVKSLVRLVVERPVVLFAAKSG 627
            DV+ELYG+ G GK+E+L+++    ++P     W  GG   +  F D D + SILRL  LL +KIT       +    G                               D+E L+ + L RL V++  S  +LLA+L  L   +       V+ +D +S+FYW D+ A   GG++V+ Q      +V  L RLV +  +VLFA KS 
Sbjct:   36 DVLELYGSEGCGKTEMLLHIACSLILPKTWRGWNFGGCGASLMFIDTDYKFSILRLVTLLEKKITDFLEQNHQVTFTGN--------------------PVTTFNPNSRDVEILIKESLERLNVLQCKSSIQLLATLHSLESSISTNLDICVIMIDSISAFYWLDRCA---GGESVTAQEHVMNLIVNILSRLVNDYNLVLFATKSA 219
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A6P8V3Q7_GYMAC (DNA repair protein XRCC2 isoform X1 n=6 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8V3Q7_GYMAC)

HSP 1 Score: 76.6 bits (187), Expect = 5.110e-13
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 1 
Query:   37 GDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNT-----TFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTV--VAVDGMSSFYWQDKMAQSCGGDAVSMQ----GAVVKSLVRLVVERPVVLFA 615
            G+V+ELYG  G+GK+E+L +++++ ++P   GG E    F D D  L +LRL  +L  ++   T     + QV  +++   G                           SD E LL  CL+RL V+  SS  +LL +L  L   L  RP V  + +D +S+FYW D+     GG +V+ Q        + L RL+ +  + +FA
Sbjct:   35 GEVVELYGPEGTGKTELLYHLLSRCLLPLSAGGLEVDVVFMDTDYSLDMLRLVSILDSRLNAGTHQQRRSIQVSARSSSSSG---------------------------SD-EELLGSCLSRLLVVHCSSSSQLLLTLHFLETTLTSRPRVALLLIDSISAFYWPDRCE---GGTSVTKQEEKLSKCAELLGRLLRDYRITVFA 207
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A8B8DE02_CRAVI (LOW QUALITY PROTEIN: DNA repair protein XRCC2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DE02_CRAVI)

HSP 1 Score: 75.5 bits (184), Expect = 5.610e-13
Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 1 
Query:   25 GVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAW----LGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTV--VAVDGMSSFYWQDKMAQSCGGDAVSMQGA----VVKSLVRLVVERPVVLFAAK 621
            G+ R DVIELYG  G+GKSE+L+NVVA  ++P      L G+     + DND + S++RL  ++  KI +  T Q +                              XXX   DIE L+  CL+ L +IR SS  ELL +L  L   +   P +  + +D +S+FYW DK     GG+++  Q      + + L +L+ +  +++ A K
Sbjct:   30 GLHRKDVIELYGGEGTGKSEILLNVVAAMILPKMEIYNLNGKNAHVIYIDNDYKFSMIRLVTIIESKIYS--TLQEEE--------------------------IQDXXXXKEDIENLVQKCLSNLTLIRCSSSSELLITLYGLNESMLCDPNLAMILIDSISAFYWIDKCN---GGESLMAQEKNMMQITEVLQKLIKKFDLIIIATK 207
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001EE60399 (DNA repair protein XRCC2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE60399)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-12
Identity = 62/211 (29.38%), Postives = 98/211 (46.45%), Query Frame = 1 
Query:   22 KGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPA-WL----GGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQV-KTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTV--VAVDGMSSFYWQDKMAQSCGGDAVSMQ-GAVVKSLVRLVVERPVVLFAAKSG 627
            KG+  G+V+EL+G  G+GKSEVL++ +A+ ++P  WL    GG      F D D + SILRL  LL +KIT     +V KTK                                  +IE  +  CL  L ++R +S  +LL +L  L   +     +  + +D +S+FYW D+     GG A  +    +V+ L  +  +  +V+ A K+ 
Sbjct:   30 KGISPGEVVELFGAEGTGKSEVLLHCLAKCILPPEWLTFNLGGLGAKVIFIDTDYKFSILRLVILLEKKITDIVDTEVDKTKPTS------------------------------DEIEVFITRCLKSLYLVRCNSSHQLLCTLHSLETNIAADSDIACIMIDSISAFYWIDRCNHGDGGSAHEINMNRIVEILQTIAKKYNLVVMATKAA 210
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A210R1Z7_MIZYE (DNA repair protein XRCC2 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R1Z7_MIZYE)

HSP 1 Score: 75.9 bits (185), Expect = 1.190e-12
Identity = 63/211 (29.86%), Postives = 98/211 (46.45%), Query Frame = 1 
Query:   40 DVIELYGTSGSGKSEVLINVVAQHVMP----AW-LGGEEQTAYFFDNDGRLSILRLEQLLREKITT----NTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPT--VVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKSLV----RLVVERPVVLFAAKSG 627
            DV+ELYG+ G GK+E+L+++    ++P     W  GG   +  F D D + SILRL  LL ++IT     N    +   +   F                             DIE ++ + L RL V++  S  +LLA+L  L   +   P   V+ +D +S+FYW D+     GG++V+ Q  V+  +V     LV +  +VL A KS 
Sbjct:   41 DVLELYGSEGCGKTEMLLHIACSLILPKTWRGWNFGGCGASLIFIDTDYKFSILRLVTLLEKRITHFVEHNQQVTLSENSEATFN------------------------PTSRDIEVVIKESLERLNVLQCKSSLQLLATLHSLEARISTNPDICVIMIDSISAFYWLDRCT---GGESVTAQETVMNLIVDILSHLVNDYNLVLLATKSA 224
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BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001F07E576 (DNA repair protein XRCC2 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E576)

HSP 1 Score: 75.5 bits (184), Expect = 1.480e-12
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 1 
Query:   37 GDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRP--TVVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKS----LVRLVVERPVVLFAA 618
            GDV+EL+GT G+GK+E+L +++ + ++P   GG      F D D    +LRL  +L  ++          +     GG+                         SD E  +  CL+RL V+  SS  +LL +L  L   +  RP  +++ +D +S+FYW D+   S GGD+V+ Q   ++     L RL+ +  + +FA+
Sbjct:   35 GDVVELHGTEGTGKTELLYHLLVRCLLPEDAGGLGVEVVFLDTDHHFDMLRLVTVLEHRLAQTIGAGSTEEGCESSGGQGQATAT-------------------SDPETRVRACLSRLSVVHCSSSAQLLLTLHFLETSMCSRPKLSLLIIDSISAFYWMDR---SGGGDSVAKQEVTLRKCSELLARLLRDYRISVFAS 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE4.700e-8366.67Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI2.350e-6166.47Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI00148A55192.340e-1432.96DNA repair protein XRCC2 n=1 Tax=Crassostrea gigas... [more]
UPI001CF6073B3.750e-1432.02DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnu... [more]
UPI001459174D6.110e-1431.40DNA repair protein XRCC2-like n=1 Tax=Pecten maxim... [more]
A0A6P8V3Q7_GYMAC5.110e-1330.39DNA repair protein XRCC2 isoform X1 n=6 Tax=Nototh... [more]
A0A8B8DE02_CRAVI5.610e-1331.58LOW QUALITY PROTEIN: DNA repair protein XRCC2-like... [more]
UPI001EE603991.120e-1229.38DNA repair protein XRCC2-like n=1 Tax=Haliotis rub... [more]
A0A210R1Z7_MIZYE1.190e-1229.86DNA repair protein XRCC2 n=2 Tax=Mizuhopecten yess... [more]
UPI001F07E5761.480e-1228.50DNA repair protein XRCC2 n=1 Tax=Hypomesus transpa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10654contigH-paniculata_contig10654:3800..8408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue4.6e-48
Seed eggNOG ortholog2880.D7FPE2
Preferred nameXRCC2
KEGG rclassRC00561
KEGG koko:K00454,ko:K10879,ko:K17890,ko:K21052
KEGG ReactionR03626,R07864,R07869
KEGG Pathwayko00515,ko00591,ko00592,ko01100,ko01110,ko03440,ko04136,ko04138,ko04140,ko04621,map00515,map00591,map00592,map01100,map01110,map03440,map04136,map04138,map04140,map04621
KEGG ModuleM00113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000278,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001756,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007127,GO:0007131,GO:0007275,GO:0007389,GO:0007399,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009952,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010720,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035264,GO:0035282,GO:0035825,GO:0040007,GO:0042148,GO:0042623,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045003,GO:0045595,GO:0045597,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051321,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060429,GO:0060548,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901214,GO:1901215,GO:1901360,GO:1901363,GO:1903046,GO:2000026,GO:2000269
EggNOG free text desc.meiotic DNA recombinase assembly
EggNOG OGsKOG2859@1,KOG2859@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_004600.1
EC1.13.11.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03400,ko04131
Exons4
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10654.426.1prot_H-paniculata_contig10654.426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10654 3800..8408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.8738742-CDS-H-paniculata_contig10654:3799..39651622928769.8738742-CDS-H-paniculata_contig10654:3799..3965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 3800..3965 +
1691480612.6130447-CDS-H-paniculata_contig10654:3799..39651691480612.6130447-CDS-H-paniculata_contig10654:3799..3965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 3800..3965 +
1622928769.8900812-CDS-H-paniculata_contig10654:4617..48111622928769.8900812-CDS-H-paniculata_contig10654:4617..4811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 4618..4811 +
1691480612.6278992-CDS-H-paniculata_contig10654:4617..48111691480612.6278992-CDS-H-paniculata_contig10654:4617..4811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 4618..4811 +
1622928769.9060063-CDS-H-paniculata_contig10654:5447..56031622928769.9060063-CDS-H-paniculata_contig10654:5447..5603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 5448..5603 +
1691480612.6392913-CDS-H-paniculata_contig10654:5447..56031691480612.6392913-CDS-H-paniculata_contig10654:5447..5603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 5448..5603 +
1622928769.918393-CDS-H-paniculata_contig10654:8273..84081622928769.918393-CDS-H-paniculata_contig10654:8273..8408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 8274..8408 +
1691480612.6482213-CDS-H-paniculata_contig10654:8273..84081691480612.6482213-CDS-H-paniculata_contig10654:8273..8408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10654 8274..8408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10654.426.1

>prot_H-paniculata_contig10654.426.1 ID=prot_H-paniculata_contig10654.426.1|Name=mRNA_H-paniculata_contig10654.426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
GAGASHEKGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTA
YFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRFAGAGGARA
GGTEGGTGAGMSAHLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRF
ELQHRPTVVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKSLVRLVVERP
VVLFAAKSGRCTLRTA*
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mRNA from alignment at H-paniculata_contig10654:3800..8408+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10654.426.1 ID=mRNA_H-paniculata_contig10654.426.1|Name=mRNA_H-paniculata_contig10654.426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4609bp|location=Sequence derived from alignment at H-paniculata_contig10654:3800..8408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCTGGTGCGTCTCACGAGAAGGGGGTGGGAAGAGGCGACGTGATAGA
GTTGTACGGGACCAGCGGCAGCGGCAAGTCGGAAGTTCTCATCAACGTCG
TCGCTCAACACGTCATGCCGGCGTGGCTCGGGGGGGAGGAACAGACGGCG
TACTTTTTCGACAACGGTAATTTGTTTCTTTTTTTATTATTATTATTATT
TTTTTGTTTTTCACGCCTCACACCGCCGCTTTAAAACGAGAATTGATAAC
ACATTTGCGGTGGTTTGGCGGGCCGAATGATTGAAGGCCAAGGAAAAAAA
TCTAACTCTTGCAAAGGTGTGAGATCTCGATTAGACTGACTGATTCTTGA
ACCTCCCCTAGCGCGCCAAGGCATTTGCGATGGATCTTCACATCAGGAGC
AGATAGGGAATCGTAGTCCAAGTAAAGAGAACGGTCACGTAACTGACAAA
ACACGAAACCAATAACAGACTTCAAAACATACATACTACGCGGAGCAAAC
TCGTACGAACGCTCGGGGTCACATGACTGCCGCGCGGCCTTTGGGTAGCC
GACACACGAACCTAATATCGGGGTAAGTGTTGGGCAAAGGTTTCCTTCTC
CGTCGAGGACAACCCTCTCGAAAAAAACCCCTACAGACACGCGTGCATAC
GCAGACATGGGATATTATCAAGCGCATTTTTTTTCGCCGTGCATGCCCTT
CGGTCGATCTGCCAGCTTGTCTGACCTGTCGGGTCTTTTTATGATTTCTC
TCACAAAGAGAATACTCCCGCAAAACACGCCCCTCCCCTCCCCTCCCCTC
GCTCTCTTCCCCTCAAAGACGGAAGACTAAGCATTCTGCGACTAGAGCAA
CTCCTGAGGGAAAAAATCACCACCAACACAACCTTCCAAGTCAAGACAAA
GGCCGCCGGAGGGTTCGGCGGGCGTTTTGCCGGTGCGGGGGGTGCACGGG
CAGGGGGCACGGAAGGAGGGACGGGGGCGGGGATGTCAGCTCATCTGGAT
AGTGATATCGAGGTACATATAGTATTTTCCGCCTCGTCCCGCCCTCTCCC
CCGTCTATAATAATAGTAAGTTAAACCTCTATAATAAAAGTAAGTTACAC
GTCTATAATAATAGAAATATGGTTCCAAGATAAAGTTGTCTGAATTATTG
TTTTGTCGTTCCGCTGTTACTTTTCTTGGTGATACTTGATGTCGGTGGAA
GCGATTGTAAAAGAGTAGGTGGCCGTGCTCGGTTACGATAGTTGGTGTTT
TTATGAAACCAGAAGTGATTGGTTTATAGCCGCATTAAAGGTGCCGACAT
GAAAACAAGCGCCTCGCTCGGTTGTTCGTTCGTTCATTCGTCTATTCGTT
CCTTCCTGACTATTTTTGCCCTCGGGGGAACTTGTATCCTGTGACAGTGG
ATCGATCTCTGAGCGATCGATTGATTGGTTGAAATAATTTGTTGGATAAT
CAAGAAGATTCTCGGCGGGAGATCTTTTGGACGAGAGGGAAGGGGGGAAA
TTGTACGTGAAAAGAGACACTCCGAAAGAGTATTTCTTTTGTACCCCCCC
CCCCCGCAAAAACACAGAAACCCAAGAAGTCAATAATCTTAATCGCCTAC
GCGTTTATTCGGTTATTCTTTTCTCATCTGAACGCCGTGCGCGCACAGGG
GCTGTTGGCCGACTGCCTGGCGCGCCTGCGAGTAATTCGTCCCTCTAGCC
TGTTCGAGCTGCTCGCGTCGCTAGAGGTACTGAGGTTCGAGCTGCAGCAC
CGACCGACCGTCGTGGCCGTTGACGGTATGTCTTCTTTTTACTGGCAGGA
TAAGGTAAGTATTCAACAGAGAAAAAATACAAGCGAAGACTATTCAGTAC
CTGGGGACAGGCATTTTCATATATTTTTCGTACCATGGCTGTTAGACCAT
TGGCCACGTGTCCTCGGGACGATGGAGGTTTGTTCCCATCAGAGCGGTTT
CCGATGACAATCGCTCTTATCTACGTCGCCAAATGTGTGTCATGTTTTTT
ATCTACCCTGTCTATCTCAATCGAGGGAGGGAGGGTGTGTATGTGTGTGT
GTATGTAAAAGGCAAGCGGGGTCCCTAGCTGGGTGTAAAAATGAAAATTA
CCAATACACTGCATAGGATCCCTGTAATACCCGCGGTCGCGGTAACTCGT
TGATCGTATTCTTTGTCGTTGCTTCTCACGAGGTCCTGGCAACGATAACG
ATGACAACAATACCCGATGACAGTGCTATCCCCAACACGGGGGGCTGCAA
CGTCCAATGATGGTACCGTGTTGCCGTGCTGCTGAACTGGACCATGGGGG
CGTGATATGATGGGTTTCACGAAGCGGAGCCGTGTCTTTTATCCTGCGAT
GCAATCAGAACGCGATACAGTGTTGGACGATTGCTGAGAGGGAAAACACG
TTTCACTCTCTTGGTTCTCTGTACTGTCGTCTGTATGCAGCAAGACATCA
TCTCCTTTTGTGCGTGATTCAAAGAACCCTTTTGATTGTCAGACCTGACG
GCGCGCCCGATGGGACAAGACAGCGAACAGCTTGCTACGTATGCACTAAT
AATGAGATCAGGTCATTTCTGTTGCGATTAACACTCGTACATGCTGGTCT
CCACACGAAGCGGCACAAGCAACGGCTGTCTTTGCGCAGGCTCACCGCGA
GGATGGAGGATGACACTGTATTATGTGTATATTGAAATCAAAGCACGACA
CCATTCTGTTAATGCCTGATAAAATCGCAAGTGCAGTTGAATCTAACCTC
CAAATATCGACAACCGTGTTCACAGTTGTTGGGGCTCAGCTAAAGTTTAT
ACTCACCTGGTCGTACTCGCTGTGTTGTTTTGCGCGCTGATTGGCAACGG
GCACACATGCAGGCATATTCAAATCAAAGCATAACGTCATTCTCTTAGTT
ATCTTTCCACATATACGGAGTGCCTGGCAGCGGGGCTACTCAGCGCACGT
TGTTTTCCGATATCCGAGTGCAGGCATTGCTTGTTTGCCCTCCAAATGTT
TCCTCCGATGTACGGTTTCGAACACGGATCCTCCGTTGAGATCCTGCAGG
GAGTCGCGTGCCAAAGGGTGGAGTCATCTGCACTCCACGAGACACCGTGC
TATTTGTCATTTACTGAATATAACTTTGGAAAAAAAAGGGCTTATGACGG
GACCACGGGATGGGACGATTGTACAAAAAACAGTGAAAATGCCACGACAA
AAAACCCTTGCCCTCATCGGATCGATCGGTGACTGTTGTCCACTGATTTG
GGGAATTCGTGGCCCTTTCCTCCTTCCTCGTGCAGTGGGTGTTTGACATC
TATCTTTTTTTTTTCCCTTTTTTGTGTGTTCCCATAGAGGAGCGTTGGCC
AGGTTTGCGATCTATGACTGTTTGTCTCTCGTGGAGTAGAATATGACCAT
GAGACAAGAATGAGACATCTAGCGGCGGTACTATCATATGTTACCTCACC
TTCAGATGGTGAGAAGGAAGGCACAGGGGAGCATGGCTCTGGCGGGTGGG
GGAATGAGCTGTGCAAGCTTTTGTGCCCTGATTTTTGCTGTAACCGACGC
GCACAGCCCTTGGGGTGCTTAACCAATGATTCATCCATCGAAAGAAGCAT
CAACAACCCAGGAATTGGTAATTGTACAAGTGGCCTATTAACTGGGGTGG
CCAAATACCCCCTTTTTATCAACGTTTTGGGAGGGTGTACTTCGTCGCCT
CTACTTTGATCGGTAAATCTCCCTTTTTGCCTATCGTTTACACTTTTTCG
TCCACTTTCGTACCCCATTTTGTCGGCGGGTTACCCTTCTTGTCCAGGAC
GACTGATTCAACAGTTATTTCCAGCAGTGGTCGTTACCCTCGTTTGAACA
TTTTATGTGGCAAAAAACCGAACAACCAAACCTGCTAACAACTGGGGTGG
TCTGCCCAGGGTCCGTATTCGGGGACGTCTGCCAAGATGTTACCCGCAGT
GGAAGTGCGTCCTTGATCCCTCTACAGGAAGATCAAAGGCACACCCACGT
TCCCCCTCCGTTGCCCACAACGAAACGTTGCTAGATCCAACGACAGGTTA
AGCTGTACTGGCTAGTACTCTAAGTCGTGCTGCCTGGGACTACAGGTATT
GTACGGGAGTACATGCAATAGTAGTACTTTTCAAAGTGTATTACCACACA
GTTATATGTACGGACTGCACGATCTGCAGTTTACAGTTTACAGTGTCCAC
GGCAAAAATTGTGCCTTGTCGTTTACCAAGGTCCGCTCATGGACAAAAGG
GGTGCTGTTGACGTGACGGGGTTATGTTTGGGCAAGAGAATGACCACACA
CGCGATCACCGGCCTCTCTCCACGCCCGCAGGCCACTGTACCTCTTTCTG
CCGTTCTCAGGGTGTGTACCCCTTTTTGTCAATTGCATTTCCCTCCCCTC
GGTTATTGTGTCATACTGGTATTGTATTGTATTGTATTTTATTTTATTCT
GTTTTTATTCTTTAATTTTTGCAGATGGCCCAAAGCTGTGGCGGTGATGC
GGTTTCGATGCAAGGCGCGGTCGTGAAGTCGCTCGTCAGGCTAGTCGTCG
AGCGGCCAGTGGTACTCTTCGCCGCCAAGTCAGGTAGGTGTACTCTACGC
ACTGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10654:3800..8408+

>mRNA_H-paniculata_contig10654.426.1 ID=mRNA_H-paniculata_contig10654.426.1|Name=mRNA_H-paniculata_contig10654.426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig10654:3800..8408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCTGGTGCGTCTCACGAGAAGGGGGTGGGAAGAGGCGACGTGATAGA
GTTGTACGGGACCAGCGGCAGCGGCAAGTCGGAAGTTCTCATCAACGTCG
TCGCTCAACACGTCATGCCGGCGTGGCTCGGGGGGGAGGAACAGACGGCG
TACTTTTTCGACAACGGGGGCTGGTGCGTCTCACGAGAAGGGGGTGGGAA
GAGGCGACGTGATAGAGTTGTACGGGACCAGCGGCAGCGGCAAGTCGGAA
GTTCTCATCAACGTCGTCGCTCAACACGTCATGCCGGCGTGGCTCGGGGG
GGAGGAACAGACGGCGTACTTTTTCGACAACGACGGAAGACTAAGCATTC
TGCGACTAGAGCAACTCCTGAGGGAAAAAATCACCACCAACACAACCTTC
CAAGTCAAGACAAAGGCCGCCGGAGGGTTCGGCGGGCGTTTTGCCGGTGC
GGGGGGTGCACGGGCAGGGGGCACGGAAGGAGGGACGGGGGCGGGGATGT
CAGCTCATCTGGATAGTGATATCGAGACGGAAGACTAAGCATTCTGCGAC
TAGAGCAACTCCTGAGGGAAAAAATCACCACCAACACAACCTTCCAAGTC
AAGACAAAGGCCGCCGGAGGGTTCGGCGGGCGTTTTGCCGGTGCGGGGGG
TGCACGGGCAGGGGGCACGGAAGGAGGGACGGGGGCGGGGATGTCAGCTC
ATCTGGATAGTGATATCGAGGGGCTGTTGGCCGACTGCCTGGCGCGCCTG
CGAGTAATTCGTCCCTCTAGCCTGTTCGAGCTGCTCGCGTCGCTAGAGGT
ACTGAGGTTCGAGCTGCAGCACCGACCGACCGTCGTGGCCGTTGACGGTA
TGTCTTCTTTTTACTGGCAGGATAAGGGGCTGTTGGCCGACTGCCTGGCG
CGCCTGCGAGTAATTCGTCCCTCTAGCCTGTTCGAGCTGCTCGCGTCGCT
AGAGGTACTGAGGTTCGAGCTGCAGCACCGACCGACCGTCGTGGCCGTTG
ACGGTATGTCTTCTTTTTACTGGCAGGATAAGATGGCCCAAAGCTGTGGC
GGTGATGCGGTTTCGATGCAAGGCGCGGTCGTGAAGTCGCTCGTCAGGCT
AGTCGTCGAGCGGCCAGTGGTACTCTTCGCCGCCAAGTCAGGTAGGTGTA
CTCTACGCACTGCATAAATGGCCCAAAGCTGTGGCGGTGATGCGGTTTCG
ATGCAAGGCGCGGTCGTGAAGTCGCTCGTCAGGCTAGTCGTCGAGCGGCC
AGTGGTACTCTTCGCCGCCAAGTCAGGTAGGTGTACTCTACGCACTGCAT
AA
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