mRNA_H-paniculata_contig17767.4242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17767.4242.1
Unique NamemRNA_H-paniculata_contig17767.4242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.160e-20
Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 RFLQGWDLDILDGPAMRPPMLGLPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDEIPAEE 252
            RFLQGWD    +  ++      +PH TILPGLQF LAGI+GKPET++++P +RF +EI+SY+ M+ ++CS V++++ D IP +E
Sbjct:  835 RFLQGWDHPRSNDQSV----WSIPHLTILPGLQFSLAGILGKPETFFKVPVIRFVYEIFSYLVMLVLFCSSVLLKEPDFIPRDE 914
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.120e-18
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 RFLQGWDLDILDGPAMRPPMLGLPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDEIPAEE 252
            R LQGWD       +       +PH TILPGLQF LAGI+GKPET++++P +RF +E +SY+ M+ ++CS V++++ D IP +E
Sbjct:  203 RVLQGWD----HPRSNESVWYYVPHLTILPGLQFSLAGILGKPETFFKVPVIRFVYESFSYLVMLVLFCSSVLLKEPDFIPRDE 282
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.330e-18
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   40 PAMRPP---MLGLPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDEIP 243
            PA RP       +PH T+LPGLQF LAGI GKPET+Y++P +RFAFEI+SY+ M+ ++C  V++++ D IP
Sbjct:  967 PASRPEPPNQWRIPHSTMLPGLQFSLAGIQGKPETFYKVPVIRFAFEIFSYLVMLVLFCFSVLLKEHDSIP 1037
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-17
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 RFLQGW---DLDILDGP----AMRPPMLGLPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDEIPAEE 252
            RFLQGW   D++  + P      R     LPH TILP LQF LAG++GKP  +Y +PAVRFA E   Y+ M+ ++CSCV ++D   IP  E
Sbjct:  934 RFLQGWNPTDMNPEEQPRGKSTRRSDRNKLPHTTILPMLQFSLAGLIGKPAVFYNVPAVRFALEFLHYLVMLGLFCSCVKLQDSYRIPPAE 1024
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.130e-17
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 RFLQGW---DLDILDGPAMRPPMLG----LPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDEIPAEE 252
            RFLQGW   D+   + P  R         LPH T+LP LQF LAG++GKP  +Y +PAVRFA E   Y+ M+ ++C+CV ++D   IP  E
Sbjct:  936 RFLQGWNPTDMSPEEQPRGRSTRRSDRNKLPHTTVLPMLQFSLAGLIGKPAVFYNVPAVRFALEFLHYLVMLGLFCACVKLQDSYRIPPAE 1026
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.390e-16
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 RFLQGWDLDILDGPAM------RPPMLGLPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDEIPAEE 252
            R LQGWD     GP        +  + G PH T+LPG QF+LAG++GKP  ++ +P VRF FE +SY+ M+ +Y S V I+  D IPA+E
Sbjct: 1237 RLLQGWDR----GPTRVLRFKEKHLLHGFPHTTVLPGTQFLLAGLLGKPTDFFLVPFVRFMFETFSYLVMLGLYWSSVAIQYSDIIPADE 1322
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.870e-12
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   49 RPPMLGLPHRTILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYI 186
            +P    +PH TILPGLQF LAG++GKPET+Y++PA+RF FEI++Y+
Sbjct: 1132 KPKRWTIPHSTILPGLQFSLAGVLGKPETFYQVPAIRFVFEIFTYL 1177
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.160e-7
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   79 TILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVII-EDKDEIPAE 249
            T LPG QF +AG+VG P+ YYR+PA+R   ++  Y+GM+  + + V+  ED    P E
Sbjct:  784 TFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGE 841
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BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.390e-5
Identity = 19/53 (35.85%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   79 TILPGLQFMLAGIVGKPETYYRLPAVRFAFEIWSYIGMVAIYCSCVIIEDKDE 237
            T  PG +F++AG++ +P +YY++PA+R   ++ +YI M+ I+   VI+ D  +
Sbjct:  855 TYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGD 907
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17767.4242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LH97_ECTSI1.160e-2048.81Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JTT3_9PHAE3.120e-1846.43Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH99_ECTSI4.330e-1853.52Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FX79_ECTSI1.500e-1747.25Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JB40_9PHAE7.130e-1745.05Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FMR2_ECTSI3.390e-1645.56Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LHA0_ECTSI2.870e-1260.87Transient Receptor Potential Channel. Partial sequ... [more]
D7FLB1_ECTSI2.160e-743.10Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LT30_ECTSI4.390e-535.85Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17767contigH-paniculata_contig17767:1425..2465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D8LH97
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929387.8054657-CDS-H-paniculata_contig17767:1425..14951622929387.8054657-CDS-H-paniculata_contig17767:1425..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17767 1426..1495 -
1691480841.0811632-CDS-H-paniculata_contig17767:1425..14951691480841.0811632-CDS-H-paniculata_contig17767:1425..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17767 1426..1495 -
1622929387.819832-CDS-H-paniculata_contig17767:2280..24651622929387.819832-CDS-H-paniculata_contig17767:2280..2465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17767 2281..2465 -
1691480841.0900505-CDS-H-paniculata_contig17767:2280..24651691480841.0900505-CDS-H-paniculata_contig17767:2280..2465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17767 2281..2465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17767.4242.1prot_H-paniculata_contig17767.4242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17767 1426..2465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17767.4242.1

>prot_H-paniculata_contig17767.4242.1 ID=prot_H-paniculata_contig17767.4242.1|Name=mRNA_H-paniculata_contig17767.4242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
RFLQGWDLDILDGPAMRPPMLGLPHRTILPGLQFMLAGIVGKPETYYRLP
AVRFAFEIWSYIGMVAIYCSCVIIEDKDEIPAEEW
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mRNA from alignment at H-paniculata_contig17767:1425..2465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17767.4242.1 ID=mRNA_H-paniculata_contig17767.4242.1|Name=mRNA_H-paniculata_contig17767.4242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1041bp|location=Sequence derived from alignment at H-paniculata_contig17767:1425..2465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTTCTTCAAGGGTGGGATCTTGATATCCTCGACGGACCTGCAATGCG
CCCGCCGATGTTGGGCCTACCGCACCGCACCATACTTCCAGGACTTCAGT
TCATGCTGGCTGGAATCGTCGGGAAGCCCGAGACCTACTACAGGCTTCCT
GCTGTCAGATTCGCATTCGAAATCTGGAGTTACATGTACGGATAGCTAAC
AGTGTGTACTAGAAATGCGGGTGTTTTGTGTTGACGATTTTCCGATATTA
TTTGCCGAATGTTGATTTGAACGTAGTCGGTGAAAGCACATGGCATCAGC
GTTCGTTGGATCTTGATGTATTCACGTTGGGTCCTCTGCTCCCGAGGTAT
GGGATTCAAAGCAACAATCTAGTAGCCGCTCCATATCTTGAGATTCCCTG
ATCCCAATTTTATCAAAGTAAATGCATTCTATCCTTAAAGAAGCGAAGAA
TATTTCAAGCTCATGAGGTTTTGGGGATGGGATATATTGCGCAAAGTATA
ACTGAACGTTTTGCATCCTGAAATAAAACATCCTAAACTTCTAGTATACA
GTGTTAGCTGGTGATGAGTAACAAAGGGTCCAGTGGATGGTTCTATGCAT
TCACGCATATATGCGACAACAAAGTCTGGACCTATTTAGAAACAAAACGT
GTGCACTTGTACAGTAAAATGGGGCGTTGAGATTTATTGCTTACTCTGGC
TACTACTACTGTCGACCGGAATATCTTCTCCACAACGACAGTGAGAGCAT
GAGCCTTGTTGCGAATCCCACCAGCCTGGATCAAGATTCGATGACAAAGG
TTGACCGCCCGCCCGCTCGGTCCACTCATAGACAACGATAGAACGGTGAT
TACTCTCAATCGTTTCATCGTAACCATTGTTGCCAACATTACTTTGCGTC
ATCTTCCTCTTGCCACGAGAAAGCAGCACCAATATTTTGTTTTTCCCACT
GTTCTGTTTCATGTAACCAGAGGAATGGTGGCCATATACTGCTCTTGCGT
CATCATTGAAGACAAGGATGAAATCCCGGCCGAGGAGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17767:1425..2465-

>mRNA_H-paniculata_contig17767.4242.1 ID=mRNA_H-paniculata_contig17767.4242.1|Name=mRNA_H-paniculata_contig17767.4242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig17767:1425..2465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTTCTTCAAGGGTGGGATCTTGATATCCTCGACGGACCTGCAATGCG
CCCGCCGATGTTGGGCCTACCGCACCGCACCATACTTCCAGGACTTCAGT
TCATGCTGGCTGGAATCGTCGGGAAGCCCGAGACCTACTACAGGCTTCCT
GCTGTCAGATTCGCATTCGAAATCTGGAGTTACATAGATTTCTTCAAGGG
TGGGATCTTGATATCCTCGACGGACCTGCAATGCGCCCGCCGATGTTGGG
CCTACCGCACCGCACCATACTTCCAGGACTTCAGTTCATGCTGGCTGGAA
TCGTCGGGAAGCCCGAGACCTACTACAGGCTTCCTGCTGTCAGATTCGCA
TTCGAAATCTGGAGTTACATAGGAATGGTGGCCATATACTGCTCTTGCGT
CATCATTGAAGACAAGGATGAAATCCCGGCCGAGGAGTGGAGGAATGGTG
GCCATATACTGCTCTTGCGTCATCATTGAAGACAAGGATGAAATCCCGGC
CGAGGAGTGG
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