mRNA_H-paniculata_contig1775.4238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1775.4238.1 vs. uniprot
Match: D7FGX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX8_ECTSI) HSP 1 Score: 600 bits (1547), Expect = 2.710e-201 Identity = 369/590 (62.54%), Postives = 424/590 (71.86%), Query Frame = 2
Query: 149 MMRAGGLRGTMQQCIGELWESDLPADFKLSQTRSLLRYLREVKLLVSHIKSESGFECDTTAYLDILCAKEESNLLRRVSDTRILKQDFDEKRREWRKKKKNVINAISEMNARALKFECNEKKTIALYAIQYYKNVMANDDGAIPGESESTDGLIEQYRRHRDEISKIPMYADSIMRMLKDIRKTVHASAKLQPGTNAFTQFLDEWWASVVNFLQHSSIVDAEKNAREVMQTLKKLKGKQEENKKKEMNRLLSKLEAQDNSTPPITPASEPFEILDDSLNPEDTGRWNDLERSRKPHAVNKARRRAREGGSMHE---------HEEQSSGFREAGNDTVETGGDLIWSGRNTDDRGVGSPLMTVTGACGGLKN--LTDVTALPLNLGNLSVTSWDGASERTLGTDAGTDPDLIATSGIPEGESDDDXXXD--EFEVADSRDLGAVNLCEAGTGADGFTTYEDTASQPYAMRHMTQKLGVEQKRFSAALDYFRQEQQFRGRRGAIMPXXXXXAGSWRSKMSTTRGRGTISRGKGRGRRLSSGGQGRTDSVG--------TKPGSAHLSRAHSLYLPSTSS--MHGSVSGKKR 1849
MMR GG RGTMQQCI E+ +S LP DFKL Q RSL+RY+REV LV I SESGFE D TAYL+ILC KEES L RRVS TR+LKQDFDEKRREWR+ KKNVINAISEM+ARALKFEC+EKKTIAL+AIQ+YKNVMAND+GAIPGESESTDGLI+QYRRHRDEISKIP YADSIM+MLKDIR+TV+ASAKLQPG+NAFTQFLDEWWASVV FL+ S IVDAE+NAREVMQTLKKLKGKQEE KK+EM+RL++KLEAQD +TPP+TPASE ILDDS+NPEDT RWN+ KAR EG + E H+E E G+ V+ D+ + R S A G + T + +P N GN+SV SWD SE TLGTD GTD D+ A SG+PE ES+ XXX EFEVADS DLGAV LC TGADG TY+DTA P AMRH+T KLGVEQ+RFSAALDYFRQEQ+ +GRR +MP XXX A RSK TRGR T G RGRR+S GG G+ G T S+ + R+HSLY+ STSS + G+ S +KR
Sbjct: 1 MMRVGGTRGTMQQCIAEIEDSALPQDFKLKQVRSLVRYMREVDGLVRGINSESGFEADCTAYLEILCTKEESELNRRVSCTRVLKQDFDEKRREWRRTKKNVINAISEMSARALKFECSEKKTIALHAIQFYKNVMANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPMTPASEAVVILDDSVNPEDTVRWNE-----------KARPDDEEGSVLEEGDTEHDYDGHDEAVDELSELGHGGVD---DMSQWSECSPSRSEASLTPRRQLAERGRERGFTTSMATIPDNAGNMSVASWDVGSEPTLGTDGGTDQDIAAASGLPEDESEXXXXXXXXEFEVADSLDLGAVALCAVETGADGQQTYQDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTKGRR-PVMPPXXXSAS--RSKTLATRGRHTPRIGNTRGRRVSQGGNGKNQRPGLRDVTFKQTSTTSSAVYRSHSLYVSSTSSTRVQGAASARKR 573
BLAST of mRNA_H-paniculata_contig1775.4238.1 vs. uniprot
Match: A0A6H5JCK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK0_9PHAE) HSP 1 Score: 399 bits (1025), Expect = 1.520e-125 Identity = 265/453 (58.50%), Postives = 306/453 (67.55%), Query Frame = 2
Query: 554 MANDDGAIPGESESTDGLIEQYRRHRDEISKIPMYADSIMRMLKDIRKTVHASAKLQPGTNAFTQFLDEWWASVVNFLQHSSIVDAEKNAREVMQTLKKLKGKQEENKKKEMNRLLSKLEAQDNSTPPITPASEPFEILDDSLNPEDTGRWNDLERSRKPHAVNKARRRAREGGSMH-EHEEQSSGFREAGNDTVETG----GDLIWSGRNTDDRGVGSPLMTVTGACGGLKN--LTDVTALPLNLGNLSVTSWDGASERTLGTDAGTDPDLIATSGIPEGESDDDXXXD-EFEVADSRDLGAVNLCEAGTGADGFTTYEDTASQPYAMRHMTQKLGVEQKRFSAALDYFRQEQQFRGRRGAIMPXXXXXAGSWRSKMSTTRGRGTISRGKGRGRRLSSGGQGRTDSVG--------TKPGSAHLSRAHSLYLPSTSS-----MHGSVSGKKR 1849
MAND+GAIPGESESTDGLI+QYRRHRDEISKIP YADSIM+MLKDIR+TV+ASAKLQPG+NAFTQFLDEWWASVV FL+ S IVDAE+NAREVMQTLKKLKGKQEE KK+EM+RL++KLEAQD +TPP+TPASE ILDDS+NPEDT RWN+ KAR EG + + E G EA ++ E G D+ ++ R S A G + T + +P N GN SV SWD SE TLGTD GTD D+ A SG+PE ESD XXX EFEVADS DLGAV LC TGADG TY+DTA P AMRH+T KLGVEQ+RFSAALDYFRQEQ+ GRR +MP XXX A RSK TRGR T G RGRR+S G G+ G T S+ + R+HSLY+ STSS M G+ S + R
Sbjct: 1 MANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPMTPASEAVVILDDSVNPEDTVRWNE-----------KARPDDEEGSVLEGDTEHDYDGHDEAVDELSELGHGGLDDMSQWSESSPSRSEASLTPRRQLAERGRERGFTTSMATIPDNTGNTSVASWDVRSEPTLGTDGGTDQDIAAASGLPEDESDXXXXXXXEFEVADSLDLGAVALCAVQTGADGQQTYQDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTMGRR-PVMPPXXXSAS--RSKTLATRGRDTPRIGDMRGRRVSQAGNGKNQRPGLRDVTFKQTSTTSSAVYRSHSLYVSSTSSTSSTRMQGAASARNR 439
BLAST of mRNA_H-paniculata_contig1775.4238.1 vs. uniprot
Match: D7FGW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW7_ECTSI) HSP 1 Score: 355 bits (910), Expect = 6.360e-111 Identity = 190/294 (64.63%), Postives = 233/294 (79.25%), Query Frame = 2
Query: 152 MRAGGLRG-TMQQCIGELWESDLPADFKLSQTRSLLRYLREVKLLVSHIKSESGFECDTTAYLDILCAKEESNLLRRVSDTRILKQDFDEKRREWRKKKKNVINAISEMNARALKFECNEKKTIALYAIQYYKNVMANDDGAIPGESESTDGLIEQYRRHRDEISKIPMYADSIMRMLKDIRKTVHASAKLQPGTNAFTQFLDEWWASVVNFLQHSSIVDAEKNAREVMQTLKKLKGKQEENKKKEMNRLLSKLEAQDNST-----------PPITPASEPFEILDDSLNPEDT 997
MR GG G TM +CI EL ES LP FKL+Q RSL+RY++EV LL I ESGFE DT +YL+ILCAKE+ +L+R+VS TR+L+QD+DEKR EW+++KK+VINAI M AR L+FE E+KTIAL+A+ +YK++MA DDGAIPGESESTD L+EQY+RHR EISKIPMYADSI++MLKDIRKTV AS+KLQPGTN+F QFL+EWWASVV FLQ SSIV+AEKNAREVMQTLKKLKGKQEE KK+E++RLLSKL+ DN++ + P + F D+S PE+T
Sbjct: 8 MRVGGATGGTMSECIAELQESSLPDAFKLAQVRSLVRYIKEVGLLQRRIIDESGFEADTNSYLEILCAKEDGDLMRKVSSTRVLRQDYDEKRLEWKRQKKSVINAIGSMTARTLRFEDKERKTIALHALAFYKSIMATDDGAIPGESESTDSLMEQYKRHRSEISKIPMYADSILKMLKDIRKTVRASSKLQPGTNSFAQFLEEWWASVVQFLQQSSIVEAEKNAREVMQTLKKLKGKQEEGKKREISRLLSKLD--DNASIDQHLPVGYLSEELPPEAAGFPPSDESKTPEET 299
BLAST of mRNA_H-paniculata_contig1775.4238.1 vs. uniprot
Match: A0A6H5JA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA20_9PHAE) HSP 1 Score: 347 bits (891), Expect = 1.620e-101 Identity = 276/671 (41.13%), Postives = 344/671 (51.27%), Query Frame = 2
Query: 152 MRAGGLRG-TMQQCIGELWESDLPADFKLSQTRSLLRYLREVKLLVSHIKSESGFECDTTAYLDILCAKEESNLLRRVSDTRILKQ---------------DFDEKRREWRKKKKNVINAISEMNARALKFECNEKKTIALYAIQYYKNVMANDDGAIPGESESTDGLIEQYRRHRDEISKIPMYADSIMRMLKDIRKTVHASAKLQPGTNAFTQFLDE--------------------------WWASVVNFLQHSSIVDAEKNAREVMQTLKKLKGKQEENKKKEMNRLLSKLEAQDNST--------------PPITPASEPFEILDDSLNPEDTG--------RWNDLERSRKPHAVNKARRRA--------------------------------------------REGGSMHEHEE-----------QSSGFREAGNDTVETGGD---------------LIWSGRNTD--------------------DRGVGSPLMTVTGACG-------GLKNLTDVTAL-----PLNLGNLSVTSWDGASERTLGTDAGTD---PDLIATSGIPEGESDDDXXX---------DEFEVADSRDLGAVNLCEAGTGADGFTTY--EDTASQPYAMRHMTQKLGVEQKRFSAALDYFRQEQQFRGRRGAIMP 1624
MR GG G TM +CI EL ES LP FKL+Q RSL+RY++EV LL I ESGFE DT +YL+ILCAKE+ +L+R+VS TR+L+Q D+DEKR EW+K+KK+VINAI M AR L+FE E+KTIAL+A+ +YK++MA DDGAIPGESESTD LIEQY+RHR EISKIPMYAD I++MLKDIRKTV AS+KLQPG N+F QFL+E WWASVV FLQ SSIV+AEKNAREVMQTLKKLKGKQEE KK+E++RLLSKL+ DN++ PP S P D+S PE+T + ++R R + ++ + + S +H E +SS + TV TG L WS D G+ SP + G G KN T + L PL+ SW+ S+ T GT + ++ SGIP+ XXX + FE AD+ DLGAV+LC G GADG TTY +D P + QK GVEQ+RFSAALD+FRQEQQ R RR A+ P
Sbjct: 8 MRIGGATGGTMSECIAELQESSLPDAFKLAQVRSLVRYIKEVGLLQRRIIDESGFEADTNSYLEILCAKEDGDLMRKVSSTRVLRQARDSKGQHRQTEPIKDYDEKRLEWKKQKKSVINAIGSMTARTLRFEDKERKTIALHALAFYKSIMATDDGAIPGESESTDALIEQYKRHRSEISKIPMYADRILKMLKDIRKTVRASSKLQPGPNSFAQFLEEARPAPMFNRSLFVTLLPKCCSVASRKWWASVVQFLQQSSIVEAEKNAREVMQTLKKLKGKQEEGKKREISRLLSKLD--DNASIDQHLPTGYLPEELPPKAAGSPPS---DESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLDPRQEXXXXXXXXXXXXXXXXXXQRVSFTDHLEVSASGGTSTMARSSSIVRSTALTVATGXXXXXXXXSCGRTKPPALTWSADREDACGSRVGGNSGGINPLKSPASGGLSSPGTRMLGIGGEGGSGFPSRKN-THASCLGKTKHPLDFLYARKVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSXXXXXXXXXXXXXXXXXELFEAADNLDLGAVDLCATGNGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRMAVSP 672
BLAST of mRNA_H-paniculata_contig1775.4238.1 vs. uniprot
Match: D7FGW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW6_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 3.160e-12 Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query: 1406 FEVADSRDLGAVNLCEAGTGADGFTTY--EDTASQPYAMRHMTQKLGVEQKRFSAALDYFRQEQQFRGRRGAIMP 1624
FE AD+ DLGAV+LC G GADG TTY +D P + QK GVEQ+RFSAALD+FRQEQQ R RR A+ P
Sbjct: 140 FEAADNLDLGAVDLCATGKGADGQTTYKDQDEVRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRMAVSP 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1775.4238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1775.4238.1 >prot_H-paniculata_contig1775.4238.1 ID=prot_H-paniculata_contig1775.4238.1|Name=mRNA_H-paniculata_contig1775.4238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=590bp MMRAGGLRGTMQQCIGELWESDLPADFKLSQTRSLLRYLREVKLLVSHIKback to top mRNA from alignment at H-paniculata_contig1775:2435..9672- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1775.4238.1 ID=mRNA_H-paniculata_contig1775.4238.1|Name=mRNA_H-paniculata_contig1775.4238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7238bp|location=Sequence derived from alignment at H-paniculata_contig1775:2435..9672- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1775:2435..9672- >mRNA_H-paniculata_contig1775.4238.1 ID=mRNA_H-paniculata_contig1775.4238.1|Name=mRNA_H-paniculata_contig1775.4238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3540bp|location=Sequence derived from alignment at H-paniculata_contig1775:2435..9672- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |