mRNA_H-paniculata_contig1774.4235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1774.4235.1
Unique NamemRNA_H-paniculata_contig1774.4235.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 5.180e-97
Identity = 144/188 (76.60%), Postives = 165/188 (87.77%), Query Frame = 3 
Query:   63 MEDPGSTKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNKGRNG-GGGEYLKNNK 623
            MEDPGS+KLD++ AK+RRTYQ+WLDRSVIYT  RW  F +SV LFLLRIY+ + WFIVTYGLGIFLLNNLIGFLSPQIDP++EGP LPT+GSDEFRPF+RRLPEFQFWLSS+KG+++ FGMT   +FD+PVFWPILL+YFI+LMFLTMKRQVKHMIKHKYVPWNWGKA Y     NG GGG+  KNNK
Sbjct:    1 MEDPGSSKLDVYSAKIRRTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQIDPESEGPGLPTSGSDEFRPFSRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTMKRQVKHMIKHKYVPWNWGKATYKGGASNGTGGGKPFKNNK 188
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A7S2W0T1_9STRA (Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0T1_9STRA)

HSP 1 Score: 225 bits (574), Expect = 5.920e-67
Identity = 105/177 (59.32%), Postives = 133/177 (75.14%), Query Frame = 3 
Query:   63 MEDPGSTKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNKGRNG 593
            M++P  +K ++F +++R T Q WLD S  Y T RW+FF + + L++LR+Y+   WFI+TYGLGI LLNN IGFLSPQ+DP++EG  LPT  SDE RPF RRLPEF+FWL+S + V L F MT  +IFD+PVFWPILL+YF  L F TMKRQ+ HMIKHKYVPW WGK +Y+ K   G
Sbjct:   10 MDEP--SKFEVFQSQLRITTQQWLDWSTPYVTARWIFFVVLLSLYMLRVYLVNGWFIITYGLGIHLLNNFIGFLSPQMDPESEGATLPTFESDEPRPFRRRLPEFKFWLASARAVCLSFFMTFFQIFDIPVFWPILLLYFFALFFFTMKRQIMHMIKHKYVPWTWGKRRYTGKSAAG 184
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A835YJT4_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT4_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.010e-65
Identity = 121/217 (55.76%), Postives = 143/217 (65.90%), Query Frame = 3 
Query:   72 PGSTKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEK------------------------------------------GVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNKGRNGG 596
            P   KL+   A+V RTYQHWLDRSVIY TGRWV F + + ++LLR+Y+ Q WFIVTYGLGIFLLNN IGFLSPQ+DP+ +GP LPTA +DEFRPF RRLPEFQFW SS +                                          GV+    MT   +FDVPVFWPILL+YF++L FLTMKRQ+KHMIKH+YVPWNWGKAKY  +G +GG
Sbjct:    8 PTPGKLEQLRAQVSRTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQVDPEMDGPGLPTASTDEFRPFTRRLPEFQFWHSSTRDAAXXXXXXXXXXXXXXXXXXXSFRXXXXXXXXXXXXXXXXRGVLTALVMTHFSLFDVPVFWPILLVYFVVLFFLTMKRQIKHMIKHRYVPWNWGKAKY--RGGDGG 222
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A7S3K339_9STRA (Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K339_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.010e-64
Identity = 103/171 (60.23%), Postives = 134/171 (78.36%), Query Frame = 3 
Query:   87 LDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSD-EFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNKGRNGG 596
            ++ FL K++R +Q  LD S +Y   RW+ F + ++++++R      W+IVTYGLGIFLLNN IGFLSPQ+DP+ EGPVLPT+  D EFRPF+RR+PEF+FW SS KGV++ F MT    FD+PVFWPILL+Y+I L+FLTMKRQ+KHMIKHKYVPW++GKAKY+  G  GG
Sbjct:   19 IEKFLVKIQRQFQRILDISTVYVITRWLIFFVCILIYVIRTASINGWYIVTYGLGIFLLNNFIGFLSPQMDPENEGPVLPTSSDDAEFRPFSRRVPEFKFWYSSTKGVLIAFVMTFFSFFDIPVFWPILLLYWIALVFLTMKRQIKHMIKHKYVPWSYGKAKYAAPGGAGG 189
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A7S2V4J3_9STRA (Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J3_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.510e-64
Identity = 102/166 (61.45%), Postives = 127/166 (76.51%), Query Frame = 3 
Query:   96 FLAKVR----RTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNK 581
            F  K+R    R YQH+LD+S I+T  RW FF L + ++ LR+Y+   W+IVTYGLGIFLLNN IGFLSPQ+DPD++GPVLP+  SDEFRPF RRLPEFQFW +  + VI+ F MT  ++FD+PVFWPILL YF +L  LTMKRQ+KHMI H YVPWN GK ++ +K
Sbjct:    8 FFEKLRFTLSRRYQHFLDKSTIHTVPRWGFFILCLGIYALRVYLVNGWYIVTYGLGIFLLNNFIGFLSPQVDPDSDGPVLPSKDSDEFRPFTRRLPEFQFWHACTRAVIIAFFMTFFKVFDIPVFWPILLFYFFVLFVLTMKRQIKHMITHGYVPWNRGKQRFQSK 173
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.030e-62
Identity = 107/172 (62.21%), Postives = 135/172 (78.49%), Query Frame = 3 
Query:   81 TKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAE---GPVLPTAGSD--EFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNK 581
            +KL++F AK+ RTYQH+LD+S IYT  RW+ F   + L+LLRIYV   +F+VTY LGIFLLNNLIGFL+PQ+DP+A+   G  LPT  +D  EFRPF RRLPEFQFW S  KG++  F MT   +FDVPVFWPILL+YFI+L  LTMKRQ++HMIK+KYVP++WGK K++ K
Sbjct:    9 SKLEVFQAKLSRTYQHYLDKSAIYTAPRWLSFFGILALYLLRIYVVNGFFLVTYALGIFLLNNLIGFLTPQLDPEADRGDGLGLPTTNNDVDEFRPFERRLPEFQFWYSCIKGLVYCFMMTFFSVFDVPVFWPILLIYFIVLFSLTMKRQIQHMIKYKYVPFSWGKPKHTGK 180
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A0G4H715_VITBC (Protein RER1 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H715_VITBC)

HSP 1 Score: 210 bits (535), Expect = 2.920e-61
Identity = 94/155 (60.65%), Postives = 126/155 (81.29%), Query Frame = 3 
Query:  114 RTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSN 578
            R Y  ++DR+  Y  GRW+FF   V LF+LRIY+TQ ++IVTYGLGI+LLN LIGFLSPQ+DP+ EGPVLP   ++E+RPF RRLPEF+ W S+ + V++   MT  R+FD+PVFWPILLMYF++L  LTMK+Q++HMIK++YVPW+WGKA+Y++
Sbjct:   21 RIYSSYIDRTATYIKGRWLFFFAMVALFVLRIYLTQGFYIVTYGLGIYLLNLLIGFLSPQVDPETEGPVLPVRDAEEYRPFQRRLPEFKCWQSATRAVVISITMTFFRMFDLPVFWPILLMYFLVLFVLTMKQQIRHMIKYRYVPWSWGKARYAS 175
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A7S2FFP1_9STRA (Protein RER1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FFP1_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.950e-60
Identity = 102/189 (53.97%), Postives = 134/189 (70.90%), Query Frame = 3 
Query:   57 LHMEDPGSTKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNKGRNGGGGEYLKNNK 623
            +  E P S  +  F AK    +Q  LDRS  +  GRW+ F   + ++ LR+Y+   W+I+TYGLGI+LLNNLIGFLSPQ+DPD+EGP LPT  S+EFRPF+RRLPEF+FW +S + V + F +T  +IFD+PVFWPILL+YFI L  LTMKRQ+KHM+KH YVPW  GK +++      GGG   K++K
Sbjct:    1 MQQEPPSS--ISGFNAKFNSQFQMLLDRSTPHIVGRWIAFVFLMGIYTLRVYLVNGWYIITYGLGIYLLNNLIGFLSPQVDPDSEGPCLPTRDSEEFRPFSRRLPEFKFWYASARAVCVSFFLTFFQIFDIPVFWPILLLYFIALFILTMKRQIKHMMKHNYVPWASGKKRFT------GGGAAKKDSK 181
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A2R5GJ85_9STRA (Protein RER1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ85_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.970e-60
Identity = 96/170 (56.47%), Postives = 128/170 (75.29%), Query Frame = 3 
Query:   78 STKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSD--EFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNK 581
            ++ ++ F A+V R YQH LD+S ++   RW  F+  ++ +L+R+Y+   WFIVTYGLGI+LLN  IGFLSPQ+DP+ EGPVLPTAG D  E+RPFNRR+PEF+FW  +   V++  GMT    FD+PVFWPILL+YFI+L  +TM++Q+ HMIKHKYVP +WGK  YS K
Sbjct:    9 ASAVEKFWAQVGRQYQHLLDKSTVHLKARWAAFAGLLLFYLIRVYMLNGWFIVTYGLGIYLLNMFIGFLSPQVDPETEGPVLPTAGRDTEEYRPFNRRVPEFKFWHKATVAVVVSIGMTFFSFFDIPVFWPILLVYFILLFVMTMRKQIAHMIKHKYVPVSWGKKTYSKK 178
[Close]
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Match: A0A7S0ITX5_9EUKA (Protein RER1 n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0ITX5_9EUKA)

HSP 1 Score: 203 bits (517), Expect = 1.440e-58
Identity = 98/183 (53.55%), Postives = 130/183 (71.04%), Query Frame = 3 
Query:   57 LHMEDPGSTKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIYVTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNRRLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKRQVKHMIKHKYVPWNWGKAKYSNKGR--NGGG 599
            + +E+ G  KL   L    R +QHWLD S  +T  RW   +  V+++ +R+Y+   W+I+TYGLGI++LN LIGFLSPQ+DP+ EGP+LPT+  D+FRPF RRLPEF+FW S  K  ++ F +T   +F++PVFWPILLMYFI L  LTMKRQ+KHMIK KYVP+++GK KY  K    NG G
Sbjct:    5 VEIEEGGVGKLQSALG---RKWQHWLDLSAPHTGARWALSAFIVLIYCIRVYLINGWYIITYGLGIYVLNLLIGFLSPQVDPETEGPILPTSKDDDFRPFIRRLPEFKFWYSLTKAFVIAFTLTFFNVFNIPVFWPILLMYFIALFVLTMKRQIKHMIKFKYVPFSFGKTKYRGKDEASNGSG 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1774.4235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB85_ECTSI5.180e-9776.60Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S2W0T1_9STRA5.920e-6759.32Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A835YJT4_9STRA4.010e-6555.76Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A7S3K339_9STRA1.010e-6460.23Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A7S2V4J3_9STRA2.510e-6461.45Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A7R9YCX7_9STRA1.030e-6262.21Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A0G4H715_VITBC2.920e-6160.65Protein RER1 n=1 Tax=Vitrella brassicaformis (stra... [more]
A0A7S2FFP1_9STRA1.950e-6053.97Protein RER1 n=1 Tax=Dictyocha speculum TaxID=3568... [more]
A0A2R5GJ85_9STRA2.970e-6056.47Protein RER1 n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
A0A7S0ITX5_9EUKA1.440e-5853.55Protein RER1 n=2 Tax=Coccolithales TaxID=418917 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1774contigH-paniculata_contig1774:17374..23875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue1.5e-79
Seed eggNOG ortholog2880.D8LB85
Preferred nameRER1
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsCOG5249@1,KOG1688@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1812
Cds size564
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.901538-UTR-H-paniculata_contig1774:17373..174351622929385.901538-UTR-H-paniculata_contig1774:17373..17435Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1774 17374..17435 +
1691480840.3263843-UTR-H-paniculata_contig1774:17373..174351691480840.3263843-UTR-H-paniculata_contig1774:17373..17435Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1774 17374..17435 +
1622929386.1175268-UTR-H-paniculata_contig1774:22689..238751622929386.1175268-UTR-H-paniculata_contig1774:22689..23875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1774 22690..23875 +
1691480840.3916965-UTR-H-paniculata_contig1774:22689..238751691480840.3916965-UTR-H-paniculata_contig1774:22689..23875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1774 22690..23875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.916159-CDS-H-paniculata_contig1774:17435..174881622929385.916159-CDS-H-paniculata_contig1774:17435..17488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 17436..17488 +
1691480840.3379784-CDS-H-paniculata_contig1774:17435..174881691480840.3379784-CDS-H-paniculata_contig1774:17435..17488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 17436..17488 +
1622929385.9333632-CDS-H-paniculata_contig1774:19720..198981622929385.9333632-CDS-H-paniculata_contig1774:19720..19898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 19721..19898 +
1691480840.3494036-CDS-H-paniculata_contig1774:19720..198981691480840.3494036-CDS-H-paniculata_contig1774:19720..19898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 19721..19898 +
1622929385.9492338-CDS-H-paniculata_contig1774:20794..208501622929385.9492338-CDS-H-paniculata_contig1774:20794..20850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 20795..20850 +
1691480840.3621101-CDS-H-paniculata_contig1774:20794..208501691480840.3621101-CDS-H-paniculata_contig1774:20794..20850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 20795..20850 +
1622929385.9662666-CDS-H-paniculata_contig1774:21521..216661622929385.9662666-CDS-H-paniculata_contig1774:21521..21666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 21522..21666 +
1691480840.3693252-CDS-H-paniculata_contig1774:21521..216661691480840.3693252-CDS-H-paniculata_contig1774:21521..21666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 21522..21666 +
1622929385.9796019-CDS-H-paniculata_contig1774:22557..226891622929385.9796019-CDS-H-paniculata_contig1774:22557..22689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 22558..22689 +
1691480840.3789124-CDS-H-paniculata_contig1774:22557..226891691480840.3789124-CDS-H-paniculata_contig1774:22557..22689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 22558..22689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1774.4235.1prot_H-paniculata_contig1774.4235.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1774 17436..22689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1774.4235.1

>prot_H-paniculata_contig1774.4235.1 ID=prot_H-paniculata_contig1774.4235.1|Name=mRNA_H-paniculata_contig1774.4235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MEDPGSTKLDIFLAKVRRTYQHWLDRSVIYTTGRWVFFSLSVMLFLLRIY
VTQSWFIVTYGLGIFLLNNLIGFLSPQIDPDAEGPVLPTAGSDEFRPFNR
RLPEFQFWLSSEKGVILGFGMTLLRIFDVPVFWPILLMYFIILMFLTMKR
QVKHMIKHKYVPWNWGKAKYSNKGRNGGGGEYLKNNK*
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mRNA from alignment at H-paniculata_contig1774:17374..23875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1774.4235.1 ID=mRNA_H-paniculata_contig1774.4235.1|Name=mRNA_H-paniculata_contig1774.4235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6502bp|location=Sequence derived from alignment at H-paniculata_contig1774:17374..23875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATGTCTGGGGCAGCGGTAGGCAGGAAAGAGGTACCTTGGACGTGTGG
TGGGTATTGCACATGGAGGACCCTGGGAGTACCAAGCTGGATATTTTCCT
GGCGAAAGTACGACGGTGAGAAAATTGCAAAAGATAAGGGACATGGAGGT
CTTGTTTCGTCCGTGTATTTTGCGGTGGCCCTGGCTTGATTCGCTTTGGG
AGGAACAAGGAGAGGAGGATTGTTGTCTGGTCCAACAAGATTGGTTCGGG
GCATGGCGATGGCGGTAACTTCCCCTTGCCTGGGCAATGCCAGTGTCGTT
TTGTCGAGGCCATATGCTTACGAGTGCTGCATATTTGAATTTGCAGCTCA
GTGCTTCACAGTCATAATCAAGGAGTATCATCAAGTCATCTGAGGTTTTT
CTTTAAAGAAAAAGATTGTCCAAAGTGTCCTGTCGCTGATTAATACTGCT
GTCCAGTAATAAGTGCTGTAAATGGACTGACTGTTATCGGTTTGTCGGTC
ACCGCTGCGAAAGATGCCCGTCCAAACTTGATGACTTTCGTTGCTTTTAG
CATTTGGTGAGGGTGAAACCTATGGATGAGCTACCCCGCGCACTTGTTTC
TGCATGCATTTATATATTTTTATAGAAGTCGCGGTAGTGGAGTGTTCTGT
GGAATTACGTGTCTCGAGCTCCCTACGCTAAAGAGCTGACCGTCGCGATT
TACATCGTACTTTGTACTGTTACCAGACTACAGAGTCGACTGTGCTGCTC
TGTACCTGCTGTTGTATCGGACATGACAGGGCAGGGATATATCTACTTGC
CTCTGAGCTTTAATGAAAACATTCGCTCTGCGTATGTATAATACAAGGCG
AAATAGGTTCTACAAAAAAAAAATAGCCTCGAATCTCTTCCCGTGGCTCC
GGAGGCTGTTTCAGAACAAAAAAATCCAGTAAGTGAACGAAAAAATGGAA
ATTAAGGGATATCGACATGGACCATTAGACGTAGTCACAGCTTTGAAAAG
TCCGAATTAAGACGGGACATGTGGATCTACTGGAACGTAGGACATGACCC
AGAAAAGTAGGCGGGTTTGCTTACCCTATCCTATCTATCCACCGCTCAGA
TGGAAATGTTTGTGGTACTTGATATAGGGTACGCACGGGCCCTTGCTTGG
CTTGTCCCACTTTCGTTGGTGGCTAAGGTAATATGCAGATTTCACGGACA
ATCGCGTCCTCGTTCATACGGTCAGATAAGGAATATGCGCTCGCAGGAGG
TGCTGGGGTCTACCAGGGCATCTTATATAGTCTATGTTGCCAATCCAACG
ATTGCAAGCAAGTGAAGCGGAACGACGACGGGCGTTGTGAGCATACGGGG
TCTACCAGGGCATTTTACATTAACGATCCTGCTAACGCATCGATTACAAG
CAAGTGAAGCAAAAGCGTGAGCGAACGGCGACGCGTGTTGTGAGCATGTG
GGGTGTGAAGAATATTCACACGAAACTCGATCACTTGTCCCATGAAACGG
CTTTCGAAGGAGCCTGTTACTACTCCACATCTGTTGTTTGTAACCGCCCC
CTCTTCTTACGAAACCAACAATGGTGCTGAATGTCCATTGGTCAACGAAT
GTGTCGAGTAATGTGTGTCAAACATCACAAAGCTTCTTACTTCAGCTAGA
GACTTCGGGAAAGAAACATGAAACGTACAATAAATGTTGGAGCGCTGCAG
TCAAAAGTCTTGTCAGCGGTCTTTTAGTGGGTGCAACCCCCATACTGCCT
ACCTGGTTCGGCCGAACCGGGGTGGCGCCTACCCCGTAGAGGAAAAAATA
ACTCTCTTGTGTAAAAGGAAATGTAGACGTACTTCGGTATGGAAGCATCG
GATAGAGATCTTTGCCTTAGCCTTCCGGGGGTTCAAAAAAAAATGTTCTC
GACGACGTTTTCTTACCGGATCCTTTGTTCGTCCGTACGCAGGGCGTACG
AAAGTAAATCAACAAGTGGATTAATGAAATGACAAAAAACAAGAGCTTCC
AGTGGTTTGTTACGTTGTTGAATATAGGAAATGATGCGCTATGCAACATG
CAAAAGTTACGTTTCAGACCATACCCTGATCTGTCGAAAGCAAAAAATCA
CGAAAGTACAGTATAGTATGACCATTTATCCCTTGTTATTTCGGTTGCAT
TCACTCGCCTACCTACCCGGTATACTTGATTTACCTATGTATATACTTTT
TTTATAGGGGCAAATCAGAGGCCGTGTCAAAAAAAAAAATCAATCTGCTC
TTTTGCTGGCGTTGTCTGCTTTATTCTCACCATCTCTGCCACTTTTGTTT
CTTTCTTTTTTTGTTTTCCCCCCTGCCGCGGTGGTGCATGCACACAGGAC
ATATCAACACTGGTTAGATCGATCAGTAATCTACACCACGGGGAGATGGG
TGTTTTTCTCACTTTCGGTGATGCTTTTCCTCTTGAGGATCTACGTTACA
CAGAGCTGGTTCATCGTGACGTATGGCCTGGGGATTTTTCTGCTGAATAA
CTTGATCGGCTTTCTGTCGCCACAGGTGTGTTTTTGTGCACTATGTATTA
TATACAGTGTTGCATGGCGTGTGTGTGTGTGTGTGCATGTGTGAATGCCG
AGAGTAGTCTTAGTACTTTAGCTGGCTTAACCTAGTCGAACAATACGATG
TCATTCTGTACTGCATTAGACTCCGATCCCCTGTGTGCAGTGTAGCAGAC
ATTGCTGTACAGAGACTGGGAGCCCCCCCTCCCCCTGGCGGTGGGGGGGG
GGCAAGGATGGGGGAGTTACATCGGATTGGTTTGAGAGGAGCGAAAGTTA
TCGGGTGCTGAATGTTACTTTGCTTTAGAATGTTGACGAAAATGTTCTGC
TACTTGCTGTGGATAATTCAGTGGGGTAGTGGAGTGCTTGGTTTGTCCTG
GGATTGTGCTGCAAAAACAGACGGCGGTAGATTTGCTGCCGTATTATCTC
CGGGTCGGCAGCAAGGATGCATGCCCTGCTTGAGTTCAAGGACCGACAGG
TGTTGTCAGCTCTTTTTTTTTCTTTTTTTTCAAATATAGCCGTACGCTTT
GACGACCGCCGTGCGAAAGACCAACCACCGAGGGCTCTGTCCTCCTAGTT
GGACGAAAGTCCTGAGTGGGATACGGATTGCGTGGCTTGATGCTAGGCCT
CTGCGACACGCAAAGTGTCCCAACGTTTGTCTTGCGATTACTGGTCTTGA
TGATCAACGGCATCGCCTCGTATGTTCTGTATGCGTTATTGTTTATGTTT
TATGGTATGTCCGTCTCTCGCTTTTTGCTTTCGGTCCAGCCAGTAGATTT
TTGCATTTTAATTGCTTTTTCGTCCGTCCCGTGCGTCAAATTTTCTCCGT
GTTTTTTTTTTTTCTTCGGCTCTTGGTCGGGGTGGGGCGGCTTGATGCCG
TTTTCTTTTACCCGAGTTTAGATTGACCCAGATGCGGAGGGGCCGGTTCT
CCCGACGGCGGGGTCGGATGAGTTCAGGTATGTTCGTACATGCTATTAAT
ATAATATATATATTCGCGTTTCACCGCGGTAGAGACAGCTGACATTGTGT
ATATGTCAGCATGAAGAATACATTGCGCTTTTGAATGAAGCTAAATCGTT
CCCACTGCAGATGAGGGCTGGCTGGCCCGTTCACTGTACAGAAATACATT
GAAGAATATATGTGGGGTTGGGGCAGCGACAGTTGGCTGCGCCTGTGCAA
TATCCGTTTGTCATTATCCAGGGATCATGTCATGGCCCACGCGCCAGAGC
CCTTTGCACTCGCATGTTGGCACGATTAAGATTCGTTCCTAGTTTGATGA
TCGAGTGCAGAGTGGGAAAACCATCTCGAAACGACCATCTTAGCGCCACA
TCAATTAGTTCATTCATTAAACGACAGAGTTGTAGACATCCTATTGTGTG
ATGGTTCTCCTCTCCTCCAGGTCCAGCGAGAATACAAGGTGGCCGACGTC
CTACGCACGCATGTAGTCTGCTGTTCTCTTGCATGTGCCGTATTTACCGA
ACTAATATTGACAAATCGGAGATGATGTAAATCGGCTGGGACATTTTCCT
CTCCTGTCCGAGCCCCCCCCCCCCCCCCCCTTCCCTGATCCATGTTTTTT
TTTTCTTTTGTGGGTGTTGCATTGTGTGTAACCATTTATTTTTCTCAGGC
CATTTAATCGACGTCTGCCGGAGTTTCAGTTTTGGCTTTCTTCGGAGAAA
GGGGTGATACTTGGGTTCGGTATGACGTTGCTTCGGATCTTCGACGTGCC
GGTGTTCTGGCCGATACTTCTGATGTACTTCATCATCCTTATGGTGAGCC
ATGTGTATTCTGTGTGCGGTCCCTCTCTGCTCTGTATATGATCCATATTT
TATAGTGATGTCATGCAGTTTGCAGGCATCAGCGGTTCCTTATTTGTGAG
TCGCTGAAAGCATATGCCGGAAACGGAGTTTCTTTGCGGTTATCACTGGG
TCGTTGGATAAAAGTCCAAGGTGACGGAGTTGGTGGGTTGTTATGCTGTT
AGCTTACCCAGGATTGTACTAGTGATTAGGACGGTTATGTCATTGTGTAT
GTGCGTGTGTTCTATGCACTTTGCTTATGTTGCGTATTTTGTGTCAACTG
GTTGCCTGGGAGAATGGCCCTGAGCGTTGTCAATCGGTAGTCGAAATTGT
CTACTAATACTGTATTGGTTGTATACAAAATAGTGTCGCCTTAGCAGACA
TGATCATTTTTGGCTTGATGCAATGATTTTGTGCAACATCACGTCGGTTT
TCGCTTTTCATACATTATACAGAACTCTACGTGTATTTATTATAGGTACT
TGCAGTACCCGATCGATGGGTGGTAGTGCGTGCGCATGATGGCGGTTGCG
TATCACGACAAAAATATGGATTGGCCTCTTGAGTGCGCGTGTTCTCCGCT
TTGCGTCGTTCGTTACATTTCGTTGGGTTCCCAGTCCTTCTTGCGACATG
GACTTGTCTTTGTGTAGTCACTTAGCTCCTTCCGGACACAATGCTGTTCG
GAAAATCGATGGAAAAATGATTTACATCCGGTTGTATGTTGAAAATTAGC
AATATTTTGAGCGTTCCAAAGAAGTGCGCAAAAGCAGGTCTGGGTGGTCA
AAAGCAGATATCAGAGGGCTGCGTTCCGAAAGGGTTAGAAATCTCTTGAT
GTCATCCCTTCCCCCCTTCCTTGTTGCCTGGCAGTTTTTGACGATGAAGC
GGCAAGTGAAGCACATGATCAAGCACAAATACGTACCGTGGAACTGGGGG
AAGGCTAAATACTCTAATAAGGGAAGAAACGGGGGCGGTGGAGAATATCT
CAAGAACAATAAATGATTTTGATGCATCGATATGGACGAACCCGGGGGGA
GGTGGGTATAGGGTTGGAGTCGGGGGTTGTGGGCGCTGGGGTTGGAGCTG
TGTGACGAAAACATGGATTGCCTTTGTTGCCAGAGGAGCCTGCCGTGTGT
ATTATCCGGTGTTGTAGAGTGTTTGCACAGCTTTCGCCCGGGAGCGGTAT
TCTGCTTGTTTCGTGATTCGACGCGGGGGTTAGCCGTAGTGTGGCTACGG
ATGTGTATGGGAGAAAGGCAGGAGGGTAAGAAACGGGGCAATTAGCGTAA
AACTGTTCATGTAGCTGCATTGGAAGTTAATCTTGGACGTGGTGATTGTC
TATTTTGTAGACGATTAGTTTTCTTTCCTTCCCTTGTTTTTTCCCACTCT
TTCCTTGGCGTTTTCGCTTGTAGTAATCACAGAACAATCGCGTCTTACTC
AAGCTAGCTCCTCCCTCCAGTATCCCTCCCTCTCTGATGGGTCCGTTCAT
CCCGGAAGAAAATTACAAGGTGTCTGCTAGAGAAAAGGGAAAGGGTGCCC
ACAGTTTTCCTATAGGTCTTTTCTTTAGACAGGCTAGGCCGATCAAGAAA
CCCATTTTTTTTTTTTTTTTCGGACGATCATATCTTCTCAACCCAGCCTG
TCTAAAGAAAGCATTGTTGCAATCGGCTCATTGAAGTTGGTTTTACAAAT
TTGAGGTTAGCTCTGCCTAACCAGTGTGGAAGGATGTTAGTGTTGAAACC
GATTTTTTTCAGCAGCACAATAATAGTCATGTGGCACGAAAATACCCGAA
TGAGGGATACCACAAGCCCATGCGCTGCGATGTGGCTACGAATACGCCAA
TTGTTTAGCAGTGGCAGAGGGCCTCGGTCCATACGATTGAGCACGACAAG
GCCAAGGGGACGTATCGGTTGAAGCTGAGATTGAGTGTGTGCCGAATTGG
CAAAAGATCGGACATTGTGATAAGTTGCACACACGCGTATCCAGAGAGGT
ACCTTGTTGGGGATATTGCAACGTCCACGCTGTGGTAAGGTTGGCAGTGT
TTACACAACGTATTAGGACGTTATGGTAAGGTTGACAATGTGTATGTAAC
GTCTTACTACGTTTCATGCATATTGTTAACCTCACGTCATGTGGGGACGT
TGTAATATATCCGCAACAAGGTACACTTTAAAGTTCATTTTACATGATAC
AA
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Coding sequence (CDS) from alignment at H-paniculata_contig1774:17374..23875+

>mRNA_H-paniculata_contig1774.4235.1 ID=mRNA_H-paniculata_contig1774.4235.1|Name=mRNA_H-paniculata_contig1774.4235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig1774:17374..23875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACCCTGGGAGTACCAAGCTGGATATTTTCCTGGCGAAAGTACG
ACGATGGAGGACCCTGGGAGTACCAAGCTGGATATTTTCCTGGCGAAAGT
ACGACGGACATATCAACACTGGTTAGATCGATCAGTAATCTACACCACGG
GGAGATGGGTGTTTTTCTCACTTTCGGTGATGCTTTTCCTCTTGAGGATC
TACGTTACACAGAGCTGGTTCATCGTGACGTATGGCCTGGGGATTTTTCT
GCTGAATAACTTGATCGGCTTTCTGTCGCCACAGGACATATCAACACTGG
TTAGATCGATCAGTAATCTACACCACGGGGAGATGGGTGTTTTTCTCACT
TTCGGTGATGCTTTTCCTCTTGAGGATCTACGTTACACAGAGCTGGTTCA
TCGTGACGTATGGCCTGGGGATTTTTCTGCTGAATAACTTGATCGGCTTT
CTGTCGCCACAGATTGACCCAGATGCGGAGGGGCCGGTTCTCCCGACGGC
GGGGTCGGATGAGTTCAGATTGACCCAGATGCGGAGGGGCCGGTTCTCCC
GACGGCGGGGTCGGATGAGTTCAGGCCATTTAATCGACGTCTGCCGGAGT
TTCAGTTTTGGCTTTCTTCGGAGAAAGGGGTGATACTTGGGTTCGGTATG
ACGTTGCTTCGGATCTTCGACGTGCCGGTGTTCTGGCCGATACTTCTGAT
GTACTTCATCATCCTTATGGCCATTTAATCGACGTCTGCCGGAGTTTCAG
TTTTGGCTTTCTTCGGAGAAAGGGGTGATACTTGGGTTCGGTATGACGTT
GCTTCGGATCTTCGACGTGCCGGTGTTCTGGCCGATACTTCTGATGTACT
TCATCATCCTTATGTTTTTGACGATGAAGCGGCAAGTGAAGCACATGATC
AAGCACAAATACGTACCGTGGAACTGGGGGAAGGCTAAATACTCTAATAA
GGGAAGAAACGGGGGCGGTGGAGAATATCTCAAGAACAATAAATGATTTT
TGACGATGAAGCGGCAAGTGAAGCACATGATCAAGCACAAATACGTACCG
TGGAACTGGGGGAAGGCTAAATACTCTAATAAGGGAAGAAACGGGGGCGG
TGGAGAATATCTCAAGAACAATAAATGA
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