mRNA_H-paniculata_contig17733.4231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17733.4231.1
Unique NamemRNA_H-paniculata_contig17733.4231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17733.4231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17733contigH-paniculata_contig17733:776..1159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.5112295-CDS-H-paniculata_contig17733:776..8831622929385.5112295-CDS-H-paniculata_contig17733:776..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17733 777..883 -
1691480840.146772-CDS-H-paniculata_contig17733:776..8831691480840.146772-CDS-H-paniculata_contig17733:776..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17733 777..883 -
1622929385.586065-CDS-H-paniculata_contig17733:1095..11591622929385.586065-CDS-H-paniculata_contig17733:1095..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17733 1096..1159 -
1691480840.1570377-CDS-H-paniculata_contig17733:1095..11591691480840.1570377-CDS-H-paniculata_contig17733:1095..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17733 1096..1159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17733.4231.1prot_H-paniculata_contig17733.4231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17733 777..1159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17733.4231.1

>prot_H-paniculata_contig17733.4231.1 ID=prot_H-paniculata_contig17733.4231.1|Name=mRNA_H-paniculata_contig17733.4231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
LDHGRLSSNTGELQAEPPSTKERNPNPKRLLTVSEGRAEQAGTQVVKKSL
DDHHEVT
back to top

mRNA from alignment at H-paniculata_contig17733:776..1159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17733.4231.1 ID=mRNA_H-paniculata_contig17733.4231.1|Name=mRNA_H-paniculata_contig17733.4231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig17733:776..1159- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGACCACGGCCGTCTCAGCAGTAACACTGGAGAGCTACAGGCCGAGCC
GCCATCCACTAAAGGTATGAAGCGTCGTGCACAACTGTTGATGTCGCTTC
GACGCCAAGCATCACTGTTGTTGACCTATCTCGTCGTTTGTTATGGATGT
ACAGCACTGATGGCTCGTGGAAGTGGATGGCAATGTTGTTGTGGCTGTGT
AGAGCGGCAATTTTCAAATTCATTCGTTTGTTCGCCATGATAGTGCTCCC
TCGCTGTTCCTGTCCCTGTTATACAGAGCGTAACCCTAACCCTAAGAGGC
TCTTGACTGTGAGCGAAGGAAGGGCGGAGCAGGCTGGTACACAAGTAGTG
AAGAAGTCGCTTGATGATCATCACGAGGTAACCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17733:776..1159-

>mRNA_H-paniculata_contig17733.4231.1 ID=mRNA_H-paniculata_contig17733.4231.1|Name=mRNA_H-paniculata_contig17733.4231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig17733:776..1159- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGACCACGGCCGTCTCAGCAGTAACACTGGAGAGCTACAGGCCGAGCC
GCCATCCACTAAAGCTCGACCACGGCCGTCTCAGCAGTAACACTGGAGAG
CTACAGGCCGAGCCGCCATCCACTAAAGAGCGTAACCCTAACCCTAAGAG
GCTCTTGACTGTGAGCGAAGGAAGGGCGGAGCAGGCTGGTACACAAGTAG
TGAAGAAGTCGCTTGATGATCATCACGAGGTAACCAGCGTAACCCTAACC
CTAAGAGGCTCTTGACTGTGAGCGAAGGAAGGGCGGAGCAGGCTGGTACA
CAAGTAGTGAAGAAGTCGCTTGATGATCATCACGAGGTAACC
back to top