mRNA_H-paniculata_contig17703.4225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17703.4225.1
Unique NamemRNA_H-paniculata_contig17703.4225.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17703.4225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17703contigH-paniculata_contig17703:480..1633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1154
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17703.4225.1prot_H-paniculata_contig17703.4225.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17703 485..1141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929384.059257-UTR-H-paniculata_contig17703:479..4841622929384.059257-UTR-H-paniculata_contig17703:479..484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17703 480..484 +
1691480839.8722544-UTR-H-paniculata_contig17703:479..4841691480839.8722544-UTR-H-paniculata_contig17703:479..484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17703 480..484 +
1622929384.089467-UTR-H-paniculata_contig17703:1141..16331622929384.089467-UTR-H-paniculata_contig17703:1141..1633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17703 1142..1633 +
1691480839.8890593-UTR-H-paniculata_contig17703:1141..16331691480839.8890593-UTR-H-paniculata_contig17703:1141..1633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17703 1142..1633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929384.0741084-CDS-H-paniculata_contig17703:484..11411622929384.0741084-CDS-H-paniculata_contig17703:484..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17703 485..1141 +
1691480839.8817236-CDS-H-paniculata_contig17703:484..11411691480839.8817236-CDS-H-paniculata_contig17703:484..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17703 485..1141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17703.4225.1

>prot_H-paniculata_contig17703.4225.1 ID=prot_H-paniculata_contig17703.4225.1|Name=mRNA_H-paniculata_contig17703.4225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MGGTPLQLKGKESGEDRGFELSVVTGSPGTSGGRGGAGGLYISRGGGGRC
GTDNAGSSSDDEAAGVDGPAYGGFGDGGARGLREVARGWDEREKAFGGGI
GALARCGAREGEMKKGRESMDVVERKCTVEDVQEERAGDGNGGLVASGES
KAGGQCLTPPTPANATNDMTWKPNKIPGSDVGPATVSATEGGSAGGEAGT
CGVENNPAATAASTLFVI*
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mRNA from alignment at H-paniculata_contig17703:480..1633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17703.4225.1 ID=mRNA_H-paniculata_contig17703.4225.1|Name=mRNA_H-paniculata_contig17703.4225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1154bp|location=Sequence derived from alignment at H-paniculata_contig17703:480..1633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGACATGGGGGGAACCCCGCTTCAGTTGAAGGGAAAGGAATCGGGGGAG
GACAGAGGCTTCGAGCTCTCGGTGGTCACCGGCTCTCCGGGTACGAGCGG
CGGTCGGGGCGGTGCTGGGGGGTTATATATTTCCCGCGGAGGCGGAGGTA
GATGTGGTACTGACAACGCCGGTTCCAGCAGCGATGATGAGGCTGCTGGT
GTCGACGGGCCTGCCTACGGTGGCTTCGGCGACGGCGGCGCGAGAGGATT
GAGAGAAGTTGCGAGGGGATGGGATGAGAGGGAAAAAGCTTTCGGTGGCG
GGATCGGTGCTTTAGCGCGCTGCGGCGCTCGGGAAGGGGAGATGAAGAAG
GGGCGTGAGAGCATGGACGTGGTAGAGCGCAAGTGCACTGTTGAAGATGT
GCAAGAGGAGCGAGCGGGCGACGGAAACGGGGGCCTGGTGGCCAGCGGGG
AAAGCAAGGCCGGAGGGCAATGCTTGACCCCGCCTACCCCCGCCAACGCG
ACCAATGACATGACCTGGAAGCCCAATAAGATTCCGGGAAGCGACGTGGG
GCCCGCCACGGTGAGCGCTACTGAGGGGGGTTCGGCTGGTGGTGAGGCTG
GAACCTGCGGAGTAGAGAACAACCCGGCGGCGACCGCGGCGAGCACATTG
TTCGTAATTTAACAGGTGTTATAATGAGGAAGGGTGGGGTTGTTGGGTGG
CGGGAGACGTCGAGGTCGGCAACAGACTTTTCTTGGCGCCTTTTGTTCGT
CCGCGGCGACCGGCAGCGTTGGCAAGTGATCGGCCGGGCGTGCGGCTCAG
ATTGGATGAGGGAGGGGAGTCAATATCTTGTGTGCCGCCAGCCCGGCGCT
TCTTTCTTGCTCTTTCCCATCCCTGGCGGCCAAAAACGCCGAGCAGGACC
CTAATACATCGGAAATGTGTTCGAGTGTATTTACCCCAATATTTGGGAGT
TTTTCGGGAGGGCGGGGTCAGTTTAAGTGTGTACCCATGGTGCTCAAGAG
AGATTGTTCCGATAGGGGGTAAGTGGCGATGTGCGGGGATTGGAGAATGA
ATCGTGGGAGCTGCTTCATTCAAAAAGCATGGAGCAGTGATTATCTGTCT
CTCGATCTCTCGCTTTTGAGGAGGCGAGGTGGTGTCTGCTCCGTGAGGTT
GGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17703:480..1633+

>mRNA_H-paniculata_contig17703.4225.1 ID=mRNA_H-paniculata_contig17703.4225.1|Name=mRNA_H-paniculata_contig17703.4225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig17703:480..1633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGGAACCCCGCTTCAGTTGAAGGGAAAGGAATCGGGGGAGGACAG
AGGCTTCGAGCTCTCGGTGGTCACCGGCTCTCCGGGTACGAGCGGCGGTC
GGGGCGGTGCTGGGGGGTTATATATTTCCCGCGGAGGCGGAGGTAGATGT
GGTACTGACAACGCCGGTTCCAGCAGCGATGATGAGGCTGCTGGTGTCGA
CGGGCCTGCCTACGGTGGCTTCGGCGACGGCGGCGCGAGAGGATTGAGAG
AAGTTGCGAGGGGATGGGATGAGAGGGAAAAAGCTTTCGGTGGCGGGATC
GGTGCTTTAGCGCGCTGCGGCGCTCGGGAAGGGGAGATGAAGAAGGGGCG
TGAGAGCATGGACGTGGTAGAGCGCAAGTGCACTGTTGAAGATGTGCAAG
AGGAGCGAGCGGGCGACGGAAACGGGGGCCTGGTGGCCAGCGGGGAAAGC
AAGGCCGGAGGGCAATGCTTGACCCCGCCTACCCCCGCCAACGCGACCAA
TGACATGACCTGGAAGCCCAATAAGATTCCGGGAAGCGACGTGGGGCCCG
CCACGGTGAGCGCTACTGAGGGGGGTTCGGCTGGTGGTGAGGCTGGAACC
TGCGGAGTAGAGAACAACCCGGCGGCGACCGCGGCGAGCACATTGTTCGT
AATTTAAATGGGGGGAACCCCGCTTCAGTTGAAGGGAAAGGAATCGGGGG
AGGACAGAGGCTTCGAGCTCTCGGTGGTCACCGGCTCTCCGGGTACGAGC
GGCGGTCGGGGCGGTGCTGGGGGGTTATATATTTCCCGCGGAGGCGGAGG
TAGATGTGGTACTGACAACGCCGGTTCCAGCAGCGATGATGAGGCTGCTG
GTGTCGACGGGCCTGCCTACGGTGGCTTCGGCGACGGCGGCGCGAGAGGA
TTGAGAGAAGTTGCGAGGGGATGGGATGAGAGGGAAAAAGCTTTCGGTGG
CGGGATCGGTGCTTTAGCGCGCTGCGGCGCTCGGGAAGGGGAGATGAAGA
AGGGGCGTGAGAGCATGGACGTGGTAGAGCGCAAGTGCACTGTTGAAGAT
GTGCAAGAGGAGCGAGCGGGCGACGGAAACGGGGGCCTGGTGGCCAGCGG
GGAAAGCAAGGCCGGAGGGCAATGCTTGACCCCGCCTACCCCCGCCAACG
CGACCAATGACATGACCTGGAAGCCCAATAAGATTCCGGGAAGCGACGTG
GGGCCCGCCACGGTGAGCGCTACTGAGGGGGGTTCGGCTGGTGGTGAGGC
TGGAACCTGCGGAGTAGAGAACAACCCGGCGGCGACCGCGGCGAGCACAT
TGTTCGTAATTTAA
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