mRNA_H-paniculata_contig17658.4206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17658.4206.1
Unique NamemRNA_H-paniculata_contig17658.4206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17658.4206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17658contigH-paniculata_contig17658:4276..5100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size826
Cds size825
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.467268-CDS-H-paniculata_contig17658:4275..51001622929381.467268-CDS-H-paniculata_contig17658:4275..5100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17658 4276..5100 +
1691480838.7654727-CDS-H-paniculata_contig17658:4275..51001691480838.7654727-CDS-H-paniculata_contig17658:4275..5100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17658 4276..5100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17658.4206.1prot_H-paniculata_contig17658.4206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17658 4276..5100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17658.4206.1

>prot_H-paniculata_contig17658.4206.1 ID=prot_H-paniculata_contig17658.4206.1|Name=mRNA_H-paniculata_contig17658.4206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MREGGSQDRHDEEDRGNGGQREEESSSREDESQPEEEDDEELAEMERWTD
IVSATVAPATASKFGLLMPAPSCAGASGTEKNRKGDQRTLSASSTSPTVD
SNNKTKHLRERKEEGTTTPGGRGGGDGGSRGGKKAGVVGAGVTATSRSKR
SAAAATSAASRTKPSKSPSFFATRSSRKLPAPTPPPPPAPRRNRARTDNA
PRSEHEEKVDLGDGARGYGPNKGDTRDRREENGGDTAAEYWEALESTKST
RSVGEENGGGGDSGGGGGGNWTDGI
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mRNA from alignment at H-paniculata_contig17658:4276..5100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17658.4206.1 ID=mRNA_H-paniculata_contig17658.4206.1|Name=mRNA_H-paniculata_contig17658.4206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at H-paniculata_contig17658:4276..5100+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAGGGCGGGAGTCAGGACAGGCATGATGAAGAGGACAGAGGGAA
CGGCGGTCAGAGGGAAGAAGAGAGCAGCAGTAGGGAGGACGAGTCGCAAC
CAGAGGAAGAAGATGACGAGGAGCTTGCGGAGATGGAGCGTTGGACTGAC
ATCGTTTCGGCAACGGTGGCACCAGCGACAGCTTCTAAATTCGGACTGCT
GATGCCTGCTCCATCCTGCGCCGGCGCCAGTGGTACCGAAAAAAATAGAA
AAGGAGACCAGCGTACTCTTTCGGCGTCAAGCACATCACCGACAGTCGAT
TCTAACAACAAGACGAAACATCTGAGGGAGAGGAAAGAGGAAGGCACTAC
TACACCTGGTGGTCGTGGTGGTGGTGATGGTGGTAGTAGAGGCGGGAAAA
AGGCTGGCGTAGTGGGTGCTGGTGTTACTGCTACTTCCAGAAGCAAAAGG
AGCGCTGCTGCTGCTACCTCCGCCGCCAGCCGCACAAAGCCCAGTAAATC
CCCCTCTTTCTTCGCCACGCGGAGCAGCAGGAAACTACCAGCGCCAACTC
CACCACCACCACCGGCGCCTCGCCGAAATCGCGCCCGCACTGACAACGCC
CCGCGCTCCGAGCATGAGGAAAAAGTTGACCTTGGCGACGGCGCCCGAGG
TTACGGGCCGAACAAGGGAGACACTCGAGATCGGAGGGAGGAAAATGGTG
GTGACACGGCTGCGGAGTACTGGGAAGCGTTGGAAAGTACTAAAAGTACG
CGATCCGTTGGAGAAGAGAACGGGGGTGGTGGTGATAGTGGTGGTGGTGG
TGGTGGAAATTGGACGGACGGTATT
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Coding sequence (CDS) from alignment at H-paniculata_contig17658:4276..5100+

>mRNA_H-paniculata_contig17658.4206.1 ID=mRNA_H-paniculata_contig17658.4206.1|Name=mRNA_H-paniculata_contig17658.4206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig17658:4276..5100+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAGGGCGGGAGTCAGGACAGGCATGATGAAGAGGACAGAGGGAA
CGGCGGTCAGAGGGAAGAAGAGAGCAGCAGTAGGGAGGACGAGTCGCAAC
CAGAGGAAGAAGATGACGAGGAGCTTGCGGAGATGGAGCGTTGGACTGAC
ATCGTTTCGGCAACGGTGGCACCAGCGACAGCTTCTAAATTCGGACTGCT
GATGCCTGCTCCATCCTGCGCCGGCGCCAGTGGTACCGAAAAAAATAGAA
AAGGAGACCAGCGTACTCTTTCGGCGTCAAGCACATCACCGACAGTCGAT
TCTAACAACAAGACGAAACATCTGAGGGAGAGGAAAGAGGAAGGCACTAC
TACACCTGGTGGTCGTGGTGGTGGTGATGGTGGTAGTAGAGGCGGGAAAA
AGGCTGGCGTAGTGGGTGCTGGTGTTACTGCTACTTCCAGAAGCAAAAGG
AGCGCTGCTGCTGCTACCTCCGCCGCCAGCCGCACAAAGCCCAGTAAATC
CCCCTCTTTCTTCGCCACGCGGAGCAGCAGGAAACTACCAGCGCCAACTC
CACCACCACCACCGGCGCCTCGCCGAAATCGCGCCCGCACTGACAACGCC
CCGCGCTCCGAGCATGAGGAAAAAGTTGACCTTGGCGACGGCGCCCGAGG
TTACGGGCCGAACAAGGGAGACACTCGAGATCGGAGGGAGGAAAATGGTG
GTGACACGGCTGCGGAGTACTGGGAAGCGTTGGAAAGTACTAAAAGTACG
CGATCCGTTGGAGAAGAGAACGGGGGTGGTGGTGATAGTGGTGGTGGTGG
TGGTGGAAATTGGACGGACGGTATTATGAGGGAGGGCGGGAGTCAGGACA
GGCATGATGAAGAGGACAGAGGGAACGGCGGTCAGAGGGAAGAAGAGAGC
AGCAGTAGGGAGGACGAGTCGCAACCAGAGGAAGAAGATGACGAGGAGCT
TGCGGAGATGGAGCGTTGGACTGACATCGTTTCGGCAACGGTGGCACCAG
CGACAGCTTCTAAATTCGGACTGCTGATGCCTGCTCCATCCTGCGCCGGC
GCCAGTGGTACCGAAAAAAATAGAAAAGGAGACCAGCGTACTCTTTCGGC
GTCAAGCACATCACCGACAGTCGATTCTAACAACAAGACGAAACATCTGA
GGGAGAGGAAAGAGGAAGGCACTACTACACCTGGTGGTCGTGGTGGTGGT
GATGGTGGTAGTAGAGGCGGGAAAAAGGCTGGCGTAGTGGGTGCTGGTGT
TACTGCTACTTCCAGAAGCAAAAGGAGCGCTGCTGCTGCTACCTCCGCCG
CCAGCCGCACAAAGCCCAGTAAATCCCCCTCTTTCTTCGCCACGCGGAGC
AGCAGGAAACTACCAGCGCCAACTCCACCACCACCACCGGCGCCTCGCCG
AAATCGCGCCCGCACTGACAACGCCCCGCGCTCCGAGCATGAGGAAAAAG
TTGACCTTGGCGACGGCGCCCGAGGTTACGGGCCGAACAAGGGAGACACT
CGAGATCGGAGGGAGGAAAATGGTGGTGACACGGCTGCGGAGTACTGGGA
AGCGTTGGAAAGTACTAAAAGTACGCGATCCGTTGGAGAAGAGAACGGGG
GTGGTGGTGATAGTGGTGGTGGTGGTGGTGGAAATTGGACGGACGGTATT
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