prot_H-paniculata_contig17645.4202.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17645.4202.1
Unique Name	prot_H-paniculata_contig17645.4202.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	130

Homology

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BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-20
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:   24 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNK-KFPVKDLGE 160

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BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.750e-20
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AAS++ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPCIFRKVVDGEV  ++V++VDD+L  A +    + FA+    RF +KDLG+
Sbjct:  107 AASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNN-RFPVKDLGE 243

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BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.870e-20
Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q    W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:  591 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNK-KFPVKDLGE 727

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BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-19
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:  450 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNK-KFPVKDLGE 586

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BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.490e-19
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QAF+ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ RADPC+FRK+VDGEV  ++V++VDD+L  A +    E FA+     F +K+LG+
Sbjct:  281 AASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREWGFEAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILVAADEGEREELFASFNKN-FPVKNLGE 417

[Close]

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.390e-19
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++  A+ K  +L H+D +QA++ A + E +Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E+FA+    +F +KDLG+
Sbjct:   70 AASIKTVITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREEFFASLNK-KFPVKDLGE 206

[Close]

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.970e-19
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD++  A +    E FA+    +F +KD+G+
Sbjct:  304 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNK-KFPVKDVGE 440

[Close]

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.780e-19
Identity = 51/138 (36.96%), Postives = 81/138 (58.70%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A++ EE Y              +++ +A+Y L Q+   W  +  D +    +EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:  107 AASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNK-KFPVKDLGE 243

[Close]

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.090e-19
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+F+KVVDGEV  ++V++VDD++  A +    E FA+    +F +KDLG+
Sbjct:  356 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEGEPEELFASLNK-KFPVKDLGE 492

[Close]

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.340e-19
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 0

Query:    4 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 127
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++  A+Y L Q+   W  +  D +   G+EQ   DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:  199 AASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVEHALYGLKQSGREWGFEAADALIENGYEQCGVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASPNK-KFPMKDLGE 335

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JXU1_9PHAE	2.460e-20	37.68	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JUN0_9PHAE	2.750e-20	37.68	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JI74_9PHAE	8.870e-20	37.68	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K1I0_9PHAE	1.210e-19	37.68	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L9H4_9PHAE	1.490e-19	37.68	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JMA7_9PHAE	2.390e-19	36.23	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KF18_9PHAE	2.970e-19	36.23	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K1G1_9PHAE	3.780e-19	36.96	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KZ24_9PHAE	4.090e-19	36.23	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JRB0_9PHAE	7.340e-19	36.96	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 5..129 e-value: 7.4E-18 score: 65.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 36..124
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..130
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17645	contig	H-paniculata_contig17645:3363..3795 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17645.4202.1	mRNA_H-paniculata_contig17645.4202.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17645 3363..3804 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17645.4202.1 ID=prot_H-paniculata_contig17645.4202.1|Name=mRNA_H-paniculata_contig17645.4202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MSAAASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVYIELNKAIYRL
VQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDML
AHAKDRTTIEWFATQRGGRFKLKDLGDAEF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2