mRNA_H-paniculata_contig1762.4192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1762.4192.1
Unique NamemRNA_H-paniculata_contig1762.4192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-15
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  100 CLRCKLEGHFWRDCRARISP-AQSRKEAALVFVESDHGE---VHACTVL-----GISKKWRSDSGATYHMTCCPEYMSNL-RPSNDKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            C  CK  GH W+ C  R +  A   K+      +S H E   +H   +      G+S KW  DSGA+YHM+   E+ +N+ +     +RV  G++L+   YGT+ I   +    V + L +V ++P+L++NLFS+ +A  +G
Sbjct:  230 CTYCKKTGHLWKSCYKRKNDEADKAKQPKGEVADSTHEEGTFIHELLMASSLPKGLSDKWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVFNGESWVKMSLNNVLFIPELKYNLFSMSSAADKG 371          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A0J7K7C5_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7C5_LASNI)

HSP 1 Score: 66.2 bits (160), Expect = 1.250e-9
Identity = 45/144 (31.25%), Postives = 68/144 (47.22%), Query Frame = 1
Query:   94 GRCLRCKLEGHFWRDCRARISPAQSRKEAALVFVESDHG-----EVHACTVLGI---SKKWRSDSGATYHMTCCPEYMSNLRPSNDKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLI--LRDVAYVPQLRFNLFSLKAAQKRG 495
            G+C +C   GH+ RDCR++ S A + K         D G     ++ +   L     +K W  DSGA+ HM+   +++ N    +  + V+ G    I   G   I   +  GN      L  V YVP+L+FNLFSL +A  +G
Sbjct:  101 GKCFKCGKVGHWKRDCRSKESNANNTKNEKSSVKTEDRGVAFVGQIESAAALIYQENTKAWYLDSGASQHMSSIRDWLVNYEELDSTIPVKTGSGKFIYAIGKGEIDIYAYDGNKWQCNYLTGVLYVPELKFNLFSLSSALDKG 244          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A8D8B2J1_CULPI (Copia protein (Fragment) n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8B2J1_CULPI)

HSP 1 Score: 63.9 bits (154), Expect = 7.740e-9
Identity = 43/148 (29.05%), Postives = 69/148 (46.62%), Query Frame = 1
Query:   97 RCLRCKLEGHFWRDC--RARISPAQSRKEAALVFVESDHGEVHACTVLGISK----------KWRSDSGATYHMTCCPEYMSNLRPSNDKVRV---RGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            RC  CK EGH   DC  + +  P   +K+       +   E ++   +G+S           KW  DSGA+ H+    E    L   +  + +   + G  +  E+ GT+ +     G +V  I++DV +VPQLR+NLFS+   +K G
Sbjct:  200 RCFSCKKEGHKSVDCTEKKKKKPQYYQKQHGAKANVAGTSERNSVCFVGVSGGEPQKVQRRVKWFLDSGASDHLAREKELFVELHKLSKPIEIAVAKDGEFIVAEHAGTVKMFSVVGGRSVECIVQDVLFVPQLRYNLFSVVRIEKAG 347          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A3S3NP32_9ACAR (Integrase core domain protein-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NP32_9ACAR)

HSP 1 Score: 63.5 bits (153), Expect = 8.700e-9
Identity = 42/140 (30.00%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  100 CLRCKLEGHFWRDCRARISPA-QSRKEAALVFVESDHGEVHACTVLGISKK----WRSDSGATYHMTCCPEYMSNLRPSNDK---VRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            C  CK  GH+WR+CR R+S   +   +   V          +  +  IS+K    W  DSGAT HMT   ++ +   P  +K   +R+     +  +  GT+TI            + +V YVP+L+ NLFS+ A   +G
Sbjct:  142 CGYCKRRGHWWRECRKRLSEVGKESNDHVNVSATKQASSAFSAELKKISEKPNDNWYLDSGATEHMTSRRDWFTTFEPILNKSHSIRLGDNHEVFAKGKGTVTIHAIVGNEWTPHQMLNVLYVPELKKNLFSIGATTDKG 281          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A2G2XFF4_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2XFF4_CAPBA)

HSP 1 Score: 61.6 bits (148), Expect = 5.130e-8
Identity = 45/142 (31.69%), Postives = 66/142 (46.48%), Query Frame = 1
Query:   94 GRCLRCKLEGHFWRDCRARISPAQSRKEAALVFVES--DHGEVHA----CTVLGISKKWRSDSGATYHMTCCPEYMSNLRPSN--DKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            G+C  C   GH   DCRA   P + +K+     +ES  D+ ++ A    C ++G S+ W  DSGAT H+    E  S   P+   + + +       +E  G   +   S  G V L L +V YV +LR NL S+    K G
Sbjct:  252 GKCFNCDKVGHKSTDCRA---PKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNSRAWLMDSGATCHVCTSKELFSTYAPAQAEETIYMANSATAKVEGIGKACLKMTS--GKV-LTLNNVLYVLELRRNLISVSLLDKNG 387          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: UPI00084F5D43 (uncharacterized protein LOC108767079 n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F5D43)

HSP 1 Score: 56.6 bits (135), Expect = 1.630e-6
Identity = 38/140 (27.14%), Postives = 64/140 (45.71%), Query Frame = 1
Query:  100 CLRCKLEGHFWRDCRARISPAQSRKEAALVFVESDHGEVHACTVLGI-----SKKWRSDSGATYHMTCCPEYMSNL---RPSNDKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            C+ CK  GH   +C  R +  ++ K+  +   +    +      +G      SK W  D+GA+ HM C  + M  +   R    K+++    LLD++   T+ +   +    +   L D  YVP L+FNLFS+  A  +G
Sbjct:  112 CIHCKKLGHASENCWFRKTK-ENEKDKEIKQDKETENKSKVNAFIGDNRSSNSKDWFMDTGASEHM-CNDKKMFQIFCERQEIKKIKIDNRTLLDVKGKSTVVLYAWTGSDFIKTFLSDALYVPDLKFNLFSVGHAMDKG 249          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A0A9WQD4_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WQD4_LYGHE)

HSP 1 Score: 57.0 bits (136), Expect = 2.100e-6
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   97 RCLRCKLEGHFWRDCRA--RISPAQSRKEAALVFVESDHGEVHACTVL--GI--SKKWRSDSGATYHMTCCPEYMSNLRPSNDK--VRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            +C  C   GH+   C+A  R  P     +        D G +   ++L  GI  S +W  DSGAT H+T   ++++NLR  + K  V    G  L I   G   ++ +  G      +R+V+YVP LR+NL S     ++G
Sbjct:  206 KCYNCNNLGHYANKCKAPRRNRPGSKSGDKG----NEDKGLILENSILATGILDSGEWYIDSGATIHVTGRKDWLTNLREPSTKSSVTTASGEKLPITAVGDTHVLLKIGGKVKKTPIRNVSYVPGLRYNLISCVELGRKG 342          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A8K0KNF1_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KNF1_LADFU)

HSP 1 Score: 55.5 bits (132), Expect = 5.970e-6
Identity = 39/131 (29.77%), Postives = 59/131 (45.04%), Query Frame = 1
Query:  100 CLRCKLEGHFWRDCRARISPAQSRKEAALVFVESDHGE----VHACTVLGISK--KWRSDSGATYHMTCCPEYMSNLRPSNDKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSL 474
            C RC   GH+ +DCR+     Q+  +   V  +   GE    V  C++L  S   +W  D  AT HMT       +  P   +V    G    +E  GTL +    +     L +++V +VP L+FNL S+
Sbjct:   72 CKRCGKYGHWAKDCRSERMGVQNGGKGVSVRYQVSKGESISCVSVCSLLLASDFYQWFLDLAATKHMTPQRGLFESFVPLQGRVNFGKGSSA-VEGKGTLLVRLSDKNEGCMLRMKNVLFVPDLKFNLVSV 201          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A438HJC7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HJC7_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 6.030e-6
Identity = 43/146 (29.45%), Postives = 66/146 (45.21%), Query Frame = 1
Query:   94 GRCLRCKLEGHFWRDCRARISPAQSRKEAALVF----VESDHGE------VHACTVLGISKKWRSDSGATYHMTCCPEYMSNLRP--SNDKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            G+C  C   GH   DCR    P + +K  A V     + +D  E      V  C ++G +K+W  D+GAT H+       S  +P   N+++ +       +E  G + I+  + G  +TL   DV +VP +R NL S     K G
Sbjct:  249 GKCYNCGKTGHKSNDCR---KPKKEKKPQANVTEFDKLSNDVSEMNLSDVVSECNIVGNTKEWWVDTGATRHICSNKLMFSTYKPVEQNEELFMGNSSSSKVEGRGKV-ILKMTSGKELTL--NDVLHVPDIRKNLVSGSLLSKNG 388          
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Match: A0A2G2XAU8_CAPBA (CCHC-type domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2XAU8_CAPBA)

HSP 1 Score: 55.1 bits (131), Expect = 7.160e-6
Identity = 40/143 (27.97%), Postives = 63/143 (44.06%), Query Frame = 1
Query:   94 GRCLRCKLEGHFWRDCRARISPAQSRKEAALVFVESDH------GEVHACTVLGISKKWRSDSGATYHMTCCPEYMSN--LRPSNDKVRVRGGRLLDIENYGTLTI-VPQSEGGNVTLILRDVAYVPQLRFNLFSLKAAQKRG 495
            G+C  C    H   DCRA   P + +K+     +ES+            C ++G S++W  DSGAT H+    E+ S+  L    + + +       +E  G + + +P  +     L L +V YV  LR NL S+    K G
Sbjct:  181 GKCFNCGKIVHKSTDCRA---PKKGKKKDQANMIESNKECDDMCAMFSECNLVGNSREWWMDSGATRHVCANNEFFSSFALAQVEEMIYMSNSATAKVEGIGKVGLKIPSGK----VLTLNNVLYVSDLRRNLISVSLLDKNG 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1762.4192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CDB8C501.500e-1532.39uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
A0A0J7K7C5_LASNI1.250e-931.25Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A8D8B2J1_CULPI7.740e-929.05Copia protein (Fragment) n=2 Tax=Culex pipiens Tax... [more]
A0A3S3NP32_9ACAR8.700e-930.00Integrase core domain protein-like protein (Fragme... [more]
A0A2G2XFF4_CAPBA5.130e-831.69Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
UPI00084F5D431.630e-627.14uncharacterized protein LOC108767079 n=1 Tax=Trach... [more]
A0A0A9WQD4_LYGHE2.100e-630.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A8K0KNF1_LADFU5.970e-629.77Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A438HJC7_VITVI6.030e-629.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G2XAU8_CAPBA7.160e-627.97CCHC-type domain-containing protein n=1 Tax=Capsic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1762contigH-paniculata_contig1762:23563..24108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.9
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog7029.ACYPI089092-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons2
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.9254174-CDS-H-paniculata_contig1762:23562..238131622929379.9254174-CDS-H-paniculata_contig1762:23562..23813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 23563..23813 -
1691480838.2514932-CDS-H-paniculata_contig1762:23562..238131691480838.2514932-CDS-H-paniculata_contig1762:23562..23813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 23563..23813 -
1622929379.9415352-CDS-H-paniculata_contig1762:23864..241081622929379.9415352-CDS-H-paniculata_contig1762:23864..24108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 23865..24108 -
1691480838.2678587-CDS-H-paniculata_contig1762:23864..241081691480838.2678587-CDS-H-paniculata_contig1762:23864..24108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 23865..24108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1762.4192.1prot_H-paniculata_contig1762.4192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1762 23563..24108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1762.4192.1

>prot_H-paniculata_contig1762.4192.1 ID=prot_H-paniculata_contig1762.4192.1|Name=mRNA_H-paniculata_contig1762.4192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
GRRSTQSRAANDGGRNNANTTAASPQGGNLNGRCLRCKLEGHFWRDCRAR
ISPAQSRKEAALVFVESDHGEVHACTVLGISKKWRSDSGATYHMTCCPEY
MSNLRPSNDKVRVRGGRLLDIENYGTLTIVPQSEGGNVTLILRDVAYVPQ
LRFNLFSLKAAQKRG
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mRNA from alignment at H-paniculata_contig1762:23563..24108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1762.4192.1 ID=mRNA_H-paniculata_contig1762.4192.1|Name=mRNA_H-paniculata_contig1762.4192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=546bp|location=Sequence derived from alignment at H-paniculata_contig1762:23563..24108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCGCCGTAGCACGCAGAGCAGAGCCGCAAACGATGGCGGCAGAAACAA CGCCAACACGACCGCTGCATCTCCGCAAGGGGGCAATCTAAATGGAAGAT GTCTCCGCTGCAAGCTGGAGGGTCATTTCTGGCGGGACTGCAGGGCGCGG ATTAGTCCTGCACAGTCGCGGAAAGAGGCCGCTTTGGTTTTTGTCGAGAG TGACCATGGTGAGGTCCATGCGTGTACAGTGCTTGGTATTTCGAGTGAAA GTACTGATGGGGTAGATGGGAATCAGATTCAGGTAGATGGTCTAGAAAAA TGGCGTAGTGATAGTGGTGCTACTTACCACATGACGTGTTGCCCCGAGTA CATGTCTAACCTCCGCCCCAGCAACGATAAGGTTAGAGTTCGAGGTGGTA GACTACTTGACATAGAAAACTATGGTACACTGACTATAGTGCCGCAAAGT GAGGGAGGAAATGTCACACTGATCCTTCGAGATGTTGCGTATGTTCCCCA ACTACGTTTTAACTTGTTCTCGCTAAAGGCAGCGCAGAAGCGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1762:23563..24108-

>mRNA_H-paniculata_contig1762.4192.1 ID=mRNA_H-paniculata_contig1762.4192.1|Name=mRNA_H-paniculata_contig1762.4192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig1762:23563..24108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCGCCGTAGCACGCAGAGCAGAGCCGCAAACGATGGCGGCAGAAACAA
CGCCAACACGACCGCTGCATCTCCGCAAGGGGGCAATCTAAATGGAAGAT
GTCTCCGCTGCAAGCTGGAGGGTCATTTCTGGCGGGACTGCAGGGCGCGG
ATTAGTCCTGCACAGTCGCGGAAAGAGGCCGCTTTGGTTTTTGTCGAGAG
TGACCATGGTGAGGTCCATGCGTGTACAGTGCTTGGTATTTCGAGGCCGC
CGTAGCACGCAGAGCAGAGCCGCAAACGATGGCGGCAGAAACAACGCCAA
CACGACCGCTGCATCTCCGCAAGGGGGCAATCTAAATGGAAGATGTCTCC
GCTGCAAGCTGGAGGGTCATTTCTGGCGGGACTGCAGGGCGCGGATTAGT
CCTGCACAGTCGCGGAAAGAGGCCGCTTTGGTTTTTGTCGAGAGTGACCA
TGGTGAGGTCCATGCGTGTACAGTGCTTGGTATTTCGAAAAAATGGCGTA
GTGATAGTGGTGCTACTTACCACATGACGTGTTGCCCCGAGTACATGTCT
AACCTCCGCCCCAGCAACGATAAGGTTAGAGTTCGAGGTGGTAGACTACT
TGACATAGAAAACTATGGTACACTGACTATAGTGCCGCAAAGTGAGGGAG
GAAATGTCACACTGATCCTTCGAGATGTTGCGTATGTTCCCCAACTACGT
TTTAACTTGTTCTCGCTAAAGGCAGCGCAGAAGCGGGGCAAAAATGGCGT
AGTGATAGTGGTGCTACTTACCACATGACGTGTTGCCCCGAGTACATGTC
TAACCTCCGCCCCAGCAACGATAAGGTTAGAGTTCGAGGTGGTAGACTAC
TTGACATAGAAAACTATGGTACACTGACTATAGTGCCGCAAAGTGAGGGA
GGAAATGTCACACTGATCCTTCGAGATGTTGCGTATGTTCCCCAACTACG
TTTTAACTTGTTCTCGCTAAAGGCAGCGCAGAAGCGGGGC
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