mRNA_H-paniculata_contig1758.4180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1758.4180.1
Unique NamemRNA_H-paniculata_contig1758.4180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1758.4180.1 vs. uniprot
Match: F0YRP4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRP4_AURAN)

HSP 1 Score: 87.0 bits (214), Expect = 4.200e-17
Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 1 
Query:    1 VAELNKTMEDMKSEHAFALHRKTAELLDELKQASEEREGQLSAKDARYEDLHQKHEIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRCEGLLEAQQQEHVWELKAREQAARKMEKELRSQIDRLQEDKNYNDQMYKQV 477
            VAE+ K +E+ +SE+ FALHRK  +   ELK A +EREG L+A+  R+E+L  +HE                                                 QQRCEGLLEAQQ+EH   ++  E   +++EKELR QIDRL ED  +N+QM+++V
Sbjct:  101 VAEMTKRLENQRSENDFALHRKDLDWEAELKHAQDEREGLLAAERVRFEELQDRHEKSMREYRADAARKGSHHIQVTHELENQYEHKLALEMERYDRLSEEIEAIQQRCEGLLEAQQREHETAIRNAEGRTKRVEKELRQQIDRLHEDAKHNEQMFREV 259
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BLAST of mRNA_H-paniculata_contig1758.4180.1 vs. uniprot
Match: A0A7S2CEP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEP0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.560e-12
Identity = 48/159 (30.19%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:    1 VAELNKTMEDMKSEHAFALHRKTAELLDELKQASEEREGQLSAKDARYEDLHQKHEIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRCEGLLEAQQQEHVWELKAREQAARKMEKELRSQIDRLQEDKNYNDQMYKQV 477
            V +++K +E+MKS++ FALHRK  +   E+K+ +EE++  ++A+ AR+ DL + H+                                                 QQRCEGLLEAQ  EH  +++  +  ++++EKELR +I++LQ+D  +N+Q +K+V
Sbjct:   61 VDDMSKKVEEMKSDNDFALHRKDLDWEIEIKRVNEEKDNLVAAEQARFSDLQKLHDDTKGKHLNIVQRKEDNHVKVTQELENQYEFKLAMEMERYDKLSEEIEAIQQRCEGLLEAQAAEHESKVRDHDAKSKRVEKELRMEIEKLQDDAKHNEQAFKEV 219
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BLAST of mRNA_H-paniculata_contig1758.4180.1 vs. uniprot
Match: A0A835Z3R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.970e-7
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  322 RCEGLLEAQQQEHVWELKAREQAARKMEKELRSQIDRLQEDKNYNDQMYKQV 477
            RC  LLEAQ  +H  +++ REQAAR +E+ELR QI+RLQEDK YNDQ+YK V
Sbjct:    7 RCNVLLEAQAAQHERDVRDREQAARHVERELRLQIERLQEDKKYNDQVYKTV 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1758.4180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F0YRP4_AURAN4.200e-1737.11Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2CEP0_9STRA9.560e-1230.19Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835Z3R4_9STRA1.970e-763.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1758contigH-paniculata_contig1758:222..1462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue3.8e-33
Seed eggNOG ortholog44056.XP_009043086.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD40 repeats
EggNOG OGs29BYW@1,2RJ2B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size477
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1758.4180.1prot_H-paniculata_contig1758.4180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1758 243..1462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.698478-UTR-H-paniculata_contig1758:221..2421622929377.698478-UTR-H-paniculata_contig1758:221..242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1758 222..242 +
1691480837.364816-UTR-H-paniculata_contig1758:221..2421691480837.364816-UTR-H-paniculata_contig1758:221..242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1758 222..242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.7143936-CDS-H-paniculata_contig1758:242..3171622929377.7143936-CDS-H-paniculata_contig1758:242..317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 243..317 +
1691480837.3779936-CDS-H-paniculata_contig1758:242..3171691480837.3779936-CDS-H-paniculata_contig1758:242..317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 243..317 +
1622929377.7281237-CDS-H-paniculata_contig1758:539..6681622929377.7281237-CDS-H-paniculata_contig1758:539..668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 540..668 +
1691480837.38721-CDS-H-paniculata_contig1758:539..6681691480837.38721-CDS-H-paniculata_contig1758:539..668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 540..668 +
1622929377.739114-CDS-H-paniculata_contig1758:905..10671622929377.739114-CDS-H-paniculata_contig1758:905..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 906..1067 +
1691480837.3979383-CDS-H-paniculata_contig1758:905..10671691480837.3979383-CDS-H-paniculata_contig1758:905..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 906..1067 +
1622929377.7533762-CDS-H-paniculata_contig1758:1372..14621622929377.7533762-CDS-H-paniculata_contig1758:1372..1462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 1373..1462 +
1691480837.409408-CDS-H-paniculata_contig1758:1372..14621691480837.409408-CDS-H-paniculata_contig1758:1372..1462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1758 1373..1462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1758.4180.1

>prot_H-paniculata_contig1758.4180.1 ID=prot_H-paniculata_contig1758.4180.1|Name=mRNA_H-paniculata_contig1758.4180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MEDMKSEHAFALHRKTAELLDELKQASEEREGQLSAKDARYEDLHQKHEI
MKRDNVEELDKKDRHHVQVMQELENQYEHRLAVELDRYDRLSEEVEAVQQ
RCEGLLEAQQQEHVWELKAREQAARKMEKELRSQIDRLQEDKNYNDQMYK
QV
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mRNA from alignment at H-paniculata_contig1758:222..1462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1758.4180.1 ID=mRNA_H-paniculata_contig1758.4180.1|Name=mRNA_H-paniculata_contig1758.4180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1241bp|location=Sequence derived from alignment at H-paniculata_contig1758:222..1462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGGAGCTCAACAAAACGATGGAGGATATGAAAAGTGAACACGCCTT
CGCTTTGCATCGCAAAACAGCAGAACTGTTGGACGAACTGAAACAGGTAA
TAATAATCAACTCTTGTCAGCAGGGGAGTGGAGTATCACGCTTGATGGGA
TGAACTGAGTGGTGGTTTAGATCTTGACACACAAACTGCCAAGTTTCCTA
GTTCTTCACGATGCTCGCATAGCATTGAAGCATCCGCAGAAGTTTTGAAG
TATGGTGTGACCAACAGCGCGTGTCAAGCAGTACCCTCAGTGACCCGTTT
ATAGAATCCAATTTGCAGGCATCGGAGGAACGTGAAGGTCAACTGTCCGC
AAAAGACGCTCGATACGAAGACCTCCACCAGAAACACGAGATCATGAAGC
GAGACAATGTCGAGGAGTTGGACAAGAAAGACCGACATCACGTACAGGTG
CTCAAGTACATCGTGAATCAGGACTAATGCCGCGACAACGGCCACACTAC
AGAAAATCGATTTCCAATCGCAATGTAGAAAACAAAATTAGTTTCATACT
GTGCTTGAGAGCTGGTCTCTTTGAAAAATGGAAAATTAACCTCAGATGGA
TGTCGCCCACCCCTCTCGAACAAACTCTCCTAGAGGTATACGGTCCGAGC
TATTGCCTGTGCTGTCCACGCCTAACCGTGATAGGTTATGCAAGAGTTAG
AAAACCAGTATGAGCACCGTCTTGCCGTGGAGCTAGATCGTTATGATCGT
CTGAGCGAAGAAGTCGAAGCTGTGCAGCAACGATGCGAAGGCCTGCTCGA
AGCTCAACAGCAAGAGCACGTGTGGGAGCTCAAAGCTAGGGAGCAGGTGA
TTCAGCAGACGAAGGAAACTGTTGGCCTCAACTAGATCTATGTTTTTGGG
AAAATGCAGGGAGGTATGCTTAACCTACAAAACTCACTACATCAGTTGTT
GACCGGGCTCGTTCGGGGCGTGATTGAACAATAAAGCGCTGAGAGCATTG
GGGATGGGTGCGTACTGCAGGGGAATTAGCTTTTACTTGCTATGGGAAAC
GATGCCATAGTACAGTAATAGGTGACATCAACGCCCCTCTTTCCCTCCCT
CCTTCTCTACTTTCGTGGCTGCAACCACCCTGTTTTTGCAACCCACACAA
GGCTGCCCGCAAGATGGAAAAGGAGCTACGGTCGCAGATAGATCGCCTGC
AGGAGGACAAGAACTACAATGATCAGATGTACAAACAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig1758:222..1462+

>mRNA_H-paniculata_contig1758.4180.1 ID=mRNA_H-paniculata_contig1758.4180.1|Name=mRNA_H-paniculata_contig1758.4180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig1758:222..1462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGATATGAAAAGTGAACACGCCTTCGCTTTGCATCGCAAAACAGC
AGAACTGTTGGACGAACTGAAACAGATGGAGGATATGAAAAGTGAACACG
CCTTCGCTTTGCATCGCAAAACAGCAGAACTGTTGGACGAACTGAAACAG
GCATCGGAGGAACGTGAAGGTCAACTGTCCGCAAAAGACGCTCGATACGA
AGACCTCCACCAGAAACACGAGATCATGAAGCGAGACAATGTCGAGGAGT
TGGACAAGAAAGACCGACATCACGTACAGGCATCGGAGGAACGTGAAGGT
CAACTGTCCGCAAAAGACGCTCGATACGAAGACCTCCACCAGAAACACGA
GATCATGAAGCGAGACAATGTCGAGGAGTTGGACAAGAAAGACCGACATC
ACGTACAGGTTATGCAAGAGTTAGAAAACCAGTATGAGCACCGTCTTGCC
GTGGAGCTAGATCGTTATGATCGTCTGAGCGAAGAAGTCGAAGCTGTGCA
GCAACGATGCGAAGGCCTGCTCGAAGCTCAACAGCAAGAGCACGTGTGGG
AGCTCAAAGCTAGGGAGCAGGTTATGCAAGAGTTAGAAAACCAGTATGAG
CACCGTCTTGCCGTGGAGCTAGATCGTTATGATCGTCTGAGCGAAGAAGT
CGAAGCTGTGCAGCAACGATGCGAAGGCCTGCTCGAAGCTCAACAGCAAG
AGCACGTGTGGGAGCTCAAAGCTAGGGAGCAGGCTGCCCGCAAGATGGAA
AAGGAGCTACGGTCGCAGATAGATCGCCTGCAGGAGGACAAGAACTACAA
TGATCAGATGTACAAACAGGTAGCTGCCCGCAAGATGGAAAAGGAGCTAC
GGTCGCAGATAGATCGCCTGCAGGAGGACAAGAACTACAATGATCAGATG
TACAAACAGGTA
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