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Homology
BLAST of mRNA_H-paniculata_contig17536.4157.1 vs. uniprot
Match: D7FYY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY9_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.680e-10 Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 3
Query: 294 SVEKACMGMSSRAFEVARAVSESEEKGVDPNALTVAYLARKQFLDMQK-RPTHQAMCLQIIARFKSSYG--KAPKPADLSQIEQEAKHAGDFMEGINDIVPYDKWTPALRTEAEKLAFVRVGACITWLKPHVRV 686
S ++ +G+ + AF +AVSESEEKGVD L+ + L L R Q++ + I+ARFK++ K P DL +++Q A AG++ + + ++PY+ WT L + + TW K H+ V
Sbjct: 41 SYKRLVIGLKAPAFAALKAVSESEEKGVDIGCLSKSLLDCDAVLKFPPGREFEQSLLIHILARFKTNEPGHKMPAKTDLPKLKQRALDAGEYFQLVTSVIPYESWTSPFHKSFYSLVYGKHTDWETWGKGHMTV 174
BLAST of mRNA_H-paniculata_contig17536.4157.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 2.350e-6 Identity = 43/143 (30.07%), Postives = 73/143 (51.05%), Query Frame = 3
Query: 303 KACMGMSSRAFEVARAVSESEEKGVDPNALTVAYLARKQFLDMQKRPTHQAMCLQIIARFKS-SYGKAPKP-ADLSQIEQEAKHAGDFMEGINDIVPYDKWTPALRTEAEKLAFVRVGACITWLKPHVRVILEEIKALEAKLP 725
KA G+ A + + ESE+K +D N +T+AY+++ F+ + Q LQI+AR+K G+A K D I +AK + + IVPY W+ L++E E +A+ + A ++ K + + +E+ L LP
Sbjct: 174 KAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAE--EQGFNLQILARWKKFQQGRAFKADIDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKSEFENMAYAK-PALWSFQKAFLDGLEDEVLKLSKGLP 313
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1360 |
| Cds size | 846 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17536.4157.1 >prot_H-paniculata_contig17536.4157.1 ID=prot_H-paniculata_contig17536.4157.1|Name=mRNA_H-paniculata_contig17536.4157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MGMSSRAFEVARAVSESEEKGVDPNALTVAYLARKQFLDMQKRPTHQAMC
LQIIARFKSSYGKAPKPADLSQIEQEAKHAGDFMEGINDIVPYDKWTPAL
RTEAEKLAFVRVGACITWLKPHVRVILEEIKALEAKLPDDCDEEIRAQVS
DVLWSKPLERIEKIMEADADLRVPLKKRQEKYQETKNKVNRLELTKGGPS
PLGRRNKNAGDDDESNKDDPNVLDNDYYNGDNDLDDDGMDSGSGKRCPGK
DARKGVLCPTCKSPASAKGFRHASERQPQAT* back to topmRNA from alignment at H-paniculata_contig17536:2318..5344- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig17536.4157.1 ID=mRNA_H-paniculata_contig17536.4157.1|Name=mRNA_H-paniculata_contig17536.4157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3027bp|location=Sequence derived from alignment at H-paniculata_contig17536:2318..5344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACTACTGTATGTCATTCTTCGTCAACAGTATTGTTCAGAATTTGTCAC
CAACTCTTCACAATCATCATTATGTTTTGTAATTTTTCTTTCACTTCCAC
TGTACGCCCTCTATTGCATCTTTACAGCTTTCAACATAGCCACAGAGTCT
ATTGCAGAGCGCACGACGTACGGCAAGCTGTTCTTCATGAATGAACTCAT
CTTGGCCGTCCAGAAGAGCCGCAACAAGAAGGACTGCTCTATTGCTGACT
ACAGCAGGGTGAGTATGTGCATTAATACTTCTTGGACCATGTACATGATG
ATACGATTCCATCACGTATGGTATAACTTTGCTTCGTTTGATACGGCGGG
CAGATTAACCCAAGTATACTTCTACTAAACCGGAGACGAAGTCTAACAAG
TATTCAATACCGTTTTTCGGCAGTATAAGAACGGAATCCATCTCCCTACT
AATATGTATAGCTGTCTATACTGCTAGTTATGTGTCCTCAATCAAATGAA
CACTCGCCCACACTTCTTATGAACATGCACAGATTGGTGCAAAGGCTCCG
GCAGAGAACACTCTCCGTCAGTGGAGAAGGCCTGCATGGGTATGTCCTCC
AGGGCGTTTGAAGTAGCTCGAGCAGTGTCCGAGAGTGAGGAGAAGGGGGT
CGACCCCAACGCCCTCACCGTTGCTTATCTTGCCCGCAAGCAGTTCCTTG
ATATGCAAAAACGCCCCACGCATCAGGCGATGTGCCTACAGATCATCGCA
AGGTGACATTTGGAACTGCGGGTGCAATTAAAGAGCTATACTCTCAAGTT
CATCGGGTTAGGAAACGCTTGTTGTGTCTTTGTGCATCATTTAGGTTTTG
TACAACGACCGACCGTGCTCTGTGTAACATGTTTGTTATGGTCTTATTGT
TTGGTGACTGTCCCAGAGGTGAAAAGCAAGCACAGCAACGAAGGCACGCT
TTTGGGGTGTTTTGCGATTGCTGCGCTATTGTTGGCGCCATTTGTTGTAT
GACAATATAGTCATTTGCGATTTTCTCCTTCCTCGTGCTTGCTTTCTTGC
GCCAGGTTCAAGTCATCCTACGGCAAAGCCCCAAAACCAGCCGACTTATC
CCAGATTGAACAAGAAGCAAAGCACGCTGGTGACTTCATGGAAGGGATCA
ACGACATTGTGCCTTATGACAAGTGGACCCCTGCGCTTCGCACGTAAGTA
GTGAAGCCTTTTCTTTATCCATTGAGCCCATGTGAATGATTTGGTATTGC
TGTGTAGCGCAGCACTTTTGCGTGCCAAGACAAAAAATGAAATGATAGTA
CTCGCTGCCCAGCAGTTGACGAAAACGCACGAACGGTTTGAGCTCCTACT
ATGCTGTTATTCTCTACTACTTGTGGCAGAGATGAGTTAAAACAATGAGC
CATGGCTAGCGTTTGTTATGAGTTGACACTACTGTACATGTACGCACGGC
CCATCTGACGTAACTGCCAGGGAAGCTGAAAAGTTGGCCTTCGTAAGGGT
TGGGGCTTGCATCACGTGGCTCAAGCCGCACGTGCGTGTAATTCTAGAGG
AGATCAAGGCGTTGGAAGCTAAGCTCCCTGATGACTGTGATGAGGAGATC
AGGGCACAGGTCTCAGATGTTCTCTGGTCGAAGCCATTGGAGCGCATCGA
GAAGGTGACAAACAATGTTTCATTTCAAAAAAAGATGTCGTATTATTGTT
GGTGACTTACACTTTGGGATGTTTACTCCCCCCCCCCATGTAGTGACAAT
ATCGCCGTGCAGATGGAGTGTGCAGCTTTCTCTTGCAATGATGGGTTTGC
TCATCATCACAGTTCTTGTGTCTGCCGCCTTATATGACATCACTATTATT
TTCGCCAGCTTGCTGGCGTGTATACTGCTGATAGCTCAAGCACATGGTGT
AGGGAGTATGCGCGACCTTTTTATTGCCGTCGCCCTTCCGTCGTCCTTTC
ACTATATCGTAATATTGTTAGATCATGGAGGCGGATGCTGACCTGCGGGT
CCCTTTAAAGAAACGGCAGGAGAAATACCAAGAGACTAAAAACAAGGTCA
ATCGCCTCGAATTGACGAAGGGCGGGCCATCACCCCTTGGGCGCCGCAAC
AAGAATGCTGGTGACGATGACGAGAGCAACAAGGACGACCCGAATGTTCT
TGACAACGACTACTACAACGGCGACAACGATCTCGACGATGATGGCATGG
ATTCTGGATCAGGCAAGAGGTGCCCCGGCAAGGATGCTCGTAAGGGGGTT
CTGTGTCCAACCTGCAAATCTCCTGCTTCTGCAAAGTAAGTGTGATAGGA
GTGATTCACTTATTGTGTTGTCCTTTCATTATGCAGAGGAGCTTTATTAT
ACGAACAGGACAATAATAGAACATCACCGCTTTCGTTACGGCGTTCTTTT
CCTGCTGCTATCTGGTAGGTAGCGGTTGTCATACAACTCACTGTACGGTA
ATAGCTTTTCATTGTCCACAGCGCTGCAAAAGCACGCATTACCGGGCCGA
TTTCCTTGGCCCACTGTAGCGAATGGTAGTGTTGGTACGGAAGTGACGTT
ACAGCAATGACAGGCAATCCGCAATAACCACCTTTCTCTACTGATGACTC
AGTCGCTTGTTCGATAGAACTACTGTTAGAGCGCATTGGGATAGTTGAGA
TAAATTGGCTGTGAGCTTGAACGTTGGATTGCTGGACCTCCAGCACGTCA
GTCAGCTACATCCTAACGGCTGTGCCTTTGTCCTCCTTCTCTTTCTTCTT
CCCCTTCGCCTGTCCGTGCACCCATGCATAGAGGTTTTCGCCATGCCTCT
GAACGGCAGCCGCAAGCTACCTGAAGTTCTCAAGAACCAGTACGTCGGCG
AGTACGACATCTACCTCAAGTACATCTCCTGTACTACTCTGGTACGTCCT
ACTTCGGAGAGAGGCCTCATGAAAGTTAGAGACTCCATACTCGAGCAGGG
ATGGCTGCGGCAGTTCACTCCTTCCGTGGTCATCCCACGTGAAAGCATGG
GTGACGACGGCAGCGTACCCAACCTTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig17536:2318..5344- >mRNA_H-paniculata_contig17536.4157.1 ID=mRNA_H-paniculata_contig17536.4157.1|Name=mRNA_H-paniculata_contig17536.4157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig17536:2318..5344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTATGTCCTCCAGGGCGTTTGAAGTAGCTCGAGCAGTGTCCGAGAG
TGAGGAGAAGGGGGTCGACCCCAACGCCCTCACCGTTGCTTATCTTGCCC
GCAAGCAGTTCCTTGATATGCAAAAACGCCCCACGCATCAGGCGATGTGC
CTACAGATCATCGCAAGATGGGTATGTCCTCCAGGGCGTTTGAAGTAGCT
CGAGCAGTGTCCGAGAGTGAGGAGAAGGGGGTCGACCCCAACGCCCTCAC
CGTTGCTTATCTTGCCCGCAAGCAGTTCCTTGATATGCAAAAACGCCCCA
CGCATCAGGCGATGTGCCTACAGATCATCGCAAGGTTCAAGTCATCCTAC
GGCAAAGCCCCAAAACCAGCCGACTTATCCCAGATTGAACAAGAAGCAAA
GCACGCTGGTGACTTCATGGAAGGGATCAACGACATTGTGCCTTATGACA
AGTGGACCCCTGCGCTTCGCACGTTCAAGTCATCCTACGGCAAAGCCCCA
AAACCAGCCGACTTATCCCAGATTGAACAAGAAGCAAAGCACGCTGGTGA
CTTCATGGAAGGGATCAACGACATTGTGCCTTATGACAAGTGGACCCCTG
CGCTTCGCACGGAAGCTGAAAAGTTGGCCTTCGTAAGGGTTGGGGCTTGC
ATCACGTGGCTCAAGCCGCACGTGCGTGTAATTCTAGAGGAGATCAAGGC
GTTGGAAGCTAAGCTCCCTGATGACTGTGATGAGGAGATCAGGGCACAGG
TCTCAGATGTTCTCTGGTCGAAGCCATTGGAGCGCATCGAGAAGGGAAGC
TGAAAAGTTGGCCTTCGTAAGGGTTGGGGCTTGCATCACGTGGCTCAAGC
CGCACGTGCGTGTAATTCTAGAGGAGATCAAGGCGTTGGAAGCTAAGCTC
CCTGATGACTGTGATGAGGAGATCAGGGCACAGGTCTCAGATGTTCTCTG
GTCGAAGCCATTGGAGCGCATCGAGAAGATCATGGAGGCGGATGCTGACC
TGCGGGTCCCTTTAAAGAAACGGCAGGAGAAATACCAAGAGACTAAAAAC
AAGGTCAATCGCCTCGAATTGACGAAGGGCGGGCCATCACCCCTTGGGCG
CCGCAACAAGAATGCTGGTGACGATGACGAGAGCAACAAGGACGACCCGA
ATGTTCTTGACAACGACTACTACAACGGCGACAACGATCTCGACGATGAT
GGCATGGATTCTGGATCAGGCAAGAGGTGCCCCGGCAAGGATGCTCGTAA
GGGGGTTCTGTGTCCAACCTGCAAATCTCCTGCTTCTGCAAAATCATGGA
GGCGGATGCTGACCTGCGGGTCCCTTTAAAGAAACGGCAGGAGAAATACC
AAGAGACTAAAAACAAGGTCAATCGCCTCGAATTGACGAAGGGCGGGCCA
TCACCCCTTGGGCGCCGCAACAAGAATGCTGGTGACGATGACGAGAGCAA
CAAGGACGACCCGAATGTTCTTGACAACGACTACTACAACGGCGACAACG
ATCTCGACGATGATGGCATGGATTCTGGATCAGGCAAGAGGTGCCCCGGC
AAGGATGCTCGTAAGGGGGTTCTGTGTCCAACCTGCAAATCTCCTGCTTC
TGCAAAAGGTTTTCGCCATGCCTCTGAACGGCAGCCGCAAGCTACCTGAA
GGTTTTCGCCATGCCTCTGAACGGCAGCCGCAAGCTACCTGA back to top
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