prot_H-paniculata_contig17524.4152.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17524.4152.1
Unique Nameprot_H-paniculata_contig17524.4152.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length80
Homology
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-14
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPDIA  V   + F ENPG +H  A +K+++Y+L+T D+GITY+G   G  +  Y+D D+A  +DDRRSVSG  +++
Sbjct:  327 TRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRDDRRSVSGVMLMM 403          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2P4XFG4_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFG4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.220e-13
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    3 RPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            RPDIA  V   + F ENPG  H  A +K+++Y+L+T D+GITY G   G ++  Y+D+D+   +DDR SVSG  +++
Sbjct:  115 RPDIAVTVTKLSRFLENPGQKHWDAGIKVVRYLLKTKDVGITYDGL-LGTELTAYSDVDWTGNRDDRGSVSGMMLII 190          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A329R934_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R934_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.410e-13
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPDI++AV   + F ENPG  H  A +++++Y+L+T D+GIT  G+  G  ++ Y+D D+A  +DDR SVSG  +++
Sbjct:  297 TRPDISNAVAQLSRFLENPGHKHWDASIRVVRYLLKTKDVGITCDGRQ-GTKLVAYSDADWAGNRDDRSSVSGLMLMM 373          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 6.520e-13
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPDIA A+     F  +PG+ H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  485 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFML 561          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 6.690e-13
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPDIA A+     F  +PG+ H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  793 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFML 869          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 71.6 bits (174), Expect = 8.990e-13
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPDIA A+     F  +PG+ H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  591 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVVGYADADYAGCADDLKSTSGYVFML 667          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A1Q3ETR3_LENED (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3ETR3_LENED)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    3 RPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQ-DCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            RPDIAHA    + F  NP   H + ++ +++Y+  T DLGITY+     G+  +VYAD DYA+C D RRS SG   ++
Sbjct: 1228 RPDIAHAANVLSRFAHNPRKVHWQHLMHLVRYISGTRDLGITYTKMAPGGLSPIVYADADYASCVDTRRSTSGVLTMM 1305          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N5VPW3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VPW3_9BASI)

HSP 1 Score: 70.5 bits (171), Expect = 2.330e-12
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLV-YADLDYATCQDDRRSVSGGAVLL 79
            TRPDI  AV + + +   PG++H  A +++L+Y+  T D+G+  S      D LV YAD D+A+C + RRSVSG  +LL
Sbjct: 1109 TRPDITFAVSSLSQYLNAPGINHWEAGIQVLRYLKGTRDVGLKLSKNPVAQDSLVGYADADWASCPESRRSVSGNLILL 1187          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A0J7JWL9_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JWL9_LASNI)

HSP 1 Score: 68.2 bits (165), Expect = 5.150e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPD+A A    + FC NP  +H +   ++L+Y+ RT D GITY+ +DC   M  Y D D+A   +DRRS SG  ++L
Sbjct:   31 TRPDLAFAASALSRFCTNPEEAHWKLAKRVLRYLQRTIDYGITYT-KDCE-KMRAYVDSDWAGDVEDRRSCSGNVIIL 106          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 69.3 bits (168), Expect = 5.910e-12
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    2 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 79
            TRPDIA A+     F  +P + H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  949 TRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTYRHSDL-LEVVGYADADYAGCADDLKSTSGYVFML 1025          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225UK66_9STRA1.060e-1447.44Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A2P4XFG4_9STRA3.220e-1344.16Retrovirus-related pol Polyprotein n=1 Tax=Phytoph... [more]
A0A329R934_9STRA3.410e-1343.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IDU9_FAGSY6.520e-1344.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HDZ1_FAGSY6.690e-1344.87RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A2N9GV19_FAGSY8.990e-1344.87Integrase catalytic domain-containing protein n=6 ... [more]
A0A1Q3ETR3_LENED1.700e-1243.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N5VPW3_9BASI2.330e-1243.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A0J7JWL9_LASNI5.150e-1243.59Retrovirus-related pol polyprotein from transposon... [more]
A0A2N9EBY4_FAGSY5.910e-1243.59Integrase catalytic domain-containing protein n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17524contigH-paniculata_contig17524:1380..1619 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17524.4152.1mRNA_H-paniculata_contig17524.4152.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17524 1380..1619 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17524.4152.1 ID=prot_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MTRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDC
GVDMLVYADLDYATCQDDRRSVSGGAVLLG
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