mRNA_H-paniculata_contig17499.4140.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17499.4140.1
Unique NamemRNA_H-paniculata_contig17499.4140.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17499.4140.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.030e-5
Identity = 31/94 (32.98%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:    4 ERVDEVRATGENLEESTVADGRQGVGSSNASPLAVPRKSMETLEQLVRDLSLKGHKRSSPTHPFLCFKTTMQLVDKARKGEDWSWVRNKNVGAF 285
            ER+D  RA G       +  G    G+    P  V   + ETL+++++   + G +  SP   F  F   M LVD+  +GE+W+WVR KN+  F
Sbjct: 1163 ERLDGGRAEG-------LPQGAGAHGAQQGWPSPVQGFTYETLKEVIKSFEVDGMRGRSP---FPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17499.4140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU35_ECTSI2.030e-532.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17499contigH-paniculata_contig17499:2176..2777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size379
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17499.4140.1prot_H-paniculata_contig17499.4140.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17499 2261..2434 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.5818367-UTR-H-paniculata_contig17499:2175..22601622929373.5818367-UTR-H-paniculata_contig17499:2175..2260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17499 2176..2260 -
1691480835.5451047-UTR-H-paniculata_contig17499:2175..22601691480835.5451047-UTR-H-paniculata_contig17499:2175..2260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17499 2176..2260 -
1622929373.6071637-UTR-H-paniculata_contig17499:2434..24641622929373.6071637-UTR-H-paniculata_contig17499:2434..2464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17499 2435..2464 -
1691480835.568807-UTR-H-paniculata_contig17499:2434..24641691480835.568807-UTR-H-paniculata_contig17499:2434..2464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17499 2435..2464 -
1622929373.6226168-UTR-H-paniculata_contig17499:2687..27771622929373.6226168-UTR-H-paniculata_contig17499:2687..2777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17499 2688..2777 -
1691480835.5817115-UTR-H-paniculata_contig17499:2687..27771691480835.5817115-UTR-H-paniculata_contig17499:2687..2777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17499 2688..2777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.5943816-CDS-H-paniculata_contig17499:2260..24341622929373.5943816-CDS-H-paniculata_contig17499:2260..2434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17499 2261..2434 -
1691480835.554257-CDS-H-paniculata_contig17499:2260..24341691480835.554257-CDS-H-paniculata_contig17499:2260..2434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17499 2261..2434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17499.4140.1

>prot_H-paniculata_contig17499.4140.1 ID=prot_H-paniculata_contig17499.4140.1|Name=mRNA_H-paniculata_contig17499.4140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
METLEQLVRDLSLKGHKRSSPTHPFLCFKTTMQLVDKARKGEDWSWVRNK
NVGAFTA*
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mRNA from alignment at H-paniculata_contig17499:2176..2777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17499.4140.1 ID=mRNA_H-paniculata_contig17499.4140.1|Name=mRNA_H-paniculata_contig17499.4140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=602bp|location=Sequence derived from alignment at H-paniculata_contig17499:2176..2777- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCGCGTCGATGAAGTACGCGCGACAGGGGAAAATCTGGAAGAGAG
CACCGTCGCGGATGGTCGTCAAGGCGTGGGTAGTTCGAATGTAAGTGGCA
CTGTGTGCGGTGAGTGTTGCATGCAGCGATTGCCCATGCAGCGAAACAAA
TGCTTCCCCCGATACAATAGTGGTAACTTGACGCACTCGGCAGTAACCCT
AGCTGCATGTAAAACACATTTCCACCACCACGCTGTGGAGTCTGAATGCT
CTACCTTAACCCAACTACCTTGCGTCTCGGACCACGACTTTGGTGTAATC
AATTCTCCCATAGGCTAGCCCATTGGCCGTGCCGAGGAAATCAATGGAAA
CGTTGGAGCAACTGGTACGGGATCTAAGCCTCAAAGGGCACAAGAGAAGC
AGCCCCACCCACCCGTTTTTGTGCTTTAAAACCACAATGCAATTGGTTGA
TAAAGCGAGAAAAGGAGAGGATTGGTCGTGGGTGAGAAATAAGAACGTTG
GGGCCTTCACGGCTTAATCTCGTGGAGTGTGAACAACGGAGTGCTCGCCA
CGGCAGGGTTGTGTATTCGAGCTACGGCGCACTGAAGAGCGATTGGCGGC
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig17499:2176..2777-

>mRNA_H-paniculata_contig17499.4140.1 ID=mRNA_H-paniculata_contig17499.4140.1|Name=mRNA_H-paniculata_contig17499.4140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig17499:2176..2777- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAACGTTGGAGCAACTGGTACGGGATCTAAGCCTCAAAGGGCACAA
GAGAAGCAGCCCCACCCACCCGTTTTTGTGCTTTAAAACCACAATGCAAT
TGGTTGATAAAGCGAGAAAAGGAGAGGATTGGTCGTGGGTGAGAAATAAG
AACGTTGGGGCCTTCACGGCTTAAATGGAAACGTTGGAGCAACTGGTACG
GGATCTAAGCCTCAAAGGGCACAAGAGAAGCAGCCCCACCCACCCGTTTT
TGTGCTTTAAAACCACAATGCAATTGGTTGATAAAGCGAGAAAAGGAGAG
GATTGGTCGTGGGTGAGAAATAAGAACGTTGGGGCCTTCACGGCTTAA
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