mRNA_H-paniculata_contig17444.4128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17444.4128.1
Unique NamemRNA_H-paniculata_contig17444.4128.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17444.4128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17444contigH-paniculata_contig17444:1833..2579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17444.4128.1prot_H-paniculata_contig17444.4128.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17444 1862..2305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.2502136-UTR-H-paniculata_contig17444:1832..18611622929371.2502136-UTR-H-paniculata_contig17444:1832..1861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17444 1833..1861 +
1691480834.3844683-UTR-H-paniculata_contig17444:1832..18611691480834.3844683-UTR-H-paniculata_contig17444:1832..1861Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17444 1833..1861 +
1622929371.279164-UTR-H-paniculata_contig17444:2305..25791622929371.279164-UTR-H-paniculata_contig17444:2305..2579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17444 2306..2579 +
1691480834.4126043-UTR-H-paniculata_contig17444:2305..25791691480834.4126043-UTR-H-paniculata_contig17444:2305..2579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17444 2306..2579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.265514-CDS-H-paniculata_contig17444:1861..23051622929371.265514-CDS-H-paniculata_contig17444:1861..2305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17444 1862..2305 +
1691480834.4029403-CDS-H-paniculata_contig17444:1861..23051691480834.4029403-CDS-H-paniculata_contig17444:1861..2305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17444 1862..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17444.4128.1

>prot_H-paniculata_contig17444.4128.1 ID=prot_H-paniculata_contig17444.4128.1|Name=mRNA_H-paniculata_contig17444.4128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MIPSNRSNDDATMLHQHFLNHQSSPPPLPLLPARVVAVSAASSNEGDKIH
AVGSYRSCLFALSSTPPLSLASARAAVLPVGGTPPCPLPPPPPPRRYFIQ
SRTRRPGPSTSSGLASAVSSVSLLLLLLLLSRSSRTNVCPRSAEARK*
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mRNA from alignment at H-paniculata_contig17444:1833..2579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17444.4128.1 ID=mRNA_H-paniculata_contig17444.4128.1|Name=mRNA_H-paniculata_contig17444.4128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig17444:1833..2579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCACACTCCTCCTCTCATTAAACGCGATGATCCCTTCTAACAGGAGC
AACGATGATGCCACCATGCTCCACCAACATTTTCTCAACCACCAGTCGTC
ACCGCCACCGCTACCTTTGCTCCCCGCTAGAGTAGTTGCTGTTTCCGCCG
CATCGAGCAACGAAGGCGACAAAATCCACGCCGTTGGTTCATATCGATCC
TGTTTGTTCGCGCTCTCGTCTACCCCTCCCCTTTCATTAGCCTCCGCCCG
TGCGGCCGTACTACCTGTAGGTGGTACCCCGCCTTGCCCTTTACCACCGC
CGCCGCCACCGCGAAGATATTTTATCCAGTCTCGTACTCGACGCCCGGGG
CCAAGCACTTCATCGGGTCTTGCCTCTGCGGTTTCGTCCGTTTCGCTGCT
GCTACTGCTGTTGTTACTATCGAGGTCATCGAGAACAAATGTTTGTCCCC
GTTCCGCGGAGGCTCGAAAATAATCGCTTGAGAACAGGATTCGCGGTTTC
TGTTCTTGTTGTTCAAGTTCTGTGGGGGGGGTATCGGTCTTGTTGCCATT
ATTCGTGGCGTCCTCGTCTTCTGATGTAGGCAGCAGCGGCTGTTTTGTAT
GAGTACTGGAGGCCAATTGCTTCTCTTGTAGGTTGCGGTATTCCCGGCAC
TTCTCCTTGGCGTCGTAGTAAGCGTCCCAGCAGCGACTGCTGTAATCGAA
GCTCAGTCCGAACTGCATGAACGCGGCGAACCCCGTGAGCTTTATCT
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Coding sequence (CDS) from alignment at H-paniculata_contig17444:1833..2579+

>mRNA_H-paniculata_contig17444.4128.1 ID=mRNA_H-paniculata_contig17444.4128.1|Name=mRNA_H-paniculata_contig17444.4128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig17444:1833..2579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCCTTCTAACAGGAGCAACGATGATGCCACCATGCTCCACCAACA
TTTTCTCAACCACCAGTCGTCACCGCCACCGCTACCTTTGCTCCCCGCTA
GAGTAGTTGCTGTTTCCGCCGCATCGAGCAACGAAGGCGACAAAATCCAC
GCCGTTGGTTCATATCGATCCTGTTTGTTCGCGCTCTCGTCTACCCCTCC
CCTTTCATTAGCCTCCGCCCGTGCGGCCGTACTACCTGTAGGTGGTACCC
CGCCTTGCCCTTTACCACCGCCGCCGCCACCGCGAAGATATTTTATCCAG
TCTCGTACTCGACGCCCGGGGCCAAGCACTTCATCGGGTCTTGCCTCTGC
GGTTTCGTCCGTTTCGCTGCTGCTACTGCTGTTGTTACTATCGAGGTCAT
CGAGAACAAATGTTTGTCCCCGTTCCGCGGAGGCTCGAAAATAAATGATC
CCTTCTAACAGGAGCAACGATGATGCCACCATGCTCCACCAACATTTTCT
CAACCACCAGTCGTCACCGCCACCGCTACCTTTGCTCCCCGCTAGAGTAG
TTGCTGTTTCCGCCGCATCGAGCAACGAAGGCGACAAAATCCACGCCGTT
GGTTCATATCGATCCTGTTTGTTCGCGCTCTCGTCTACCCCTCCCCTTTC
ATTAGCCTCCGCCCGTGCGGCCGTACTACCTGTAGGTGGTACCCCGCCTT
GCCCTTTACCACCGCCGCCGCCACCGCGAAGATATTTTATCCAGTCTCGT
ACTCGACGCCCGGGGCCAAGCACTTCATCGGGTCTTGCCTCTGCGGTTTC
GTCCGTTTCGCTGCTGCTACTGCTGTTGTTACTATCGAGGTCATCGAGAA
CAAATGTTTGTCCCCGTTCCGCGGAGGCTCGAAAATAA
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