mRNA_H-paniculata_contig17423.4119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17423.4119.1
Unique NamemRNA_H-paniculata_contig17423.4119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.280e-63
Identity = 134/323 (41.49%), Postives = 180/323 (55.73%), Query Frame = 3
Query:  768 GSTLRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
            G  ++ L ++ GVS E    +LPP  V WA     E      P +  L  HD      R+ Q K+G  + +  +   +  L++LP    P   D+ +G  E  + A AR RS  G G  A  +A P E AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:    2 GDAIKELNQEHGVSVEILKGILPPSWVEWALEPAGETRRRQ-PTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 323          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.700e-63
Identity = 137/333 (41.14%), Postives = 184/333 (55.26%), Query Frame = 3
Query:  738 FPGHRWSAHWGSTLRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
             PG       G  ++ L ++ GVS E    +LPP  V WA     E G    P +  L  HD      R+ Q K+G  +++  +   +  L++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +   E     RR L+I+ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:   81 IPGTVLVERMGDAIKELNQEHGVSVEILKGILPPLWVEWALQPPGETGRRQ-PTVAELAAHDGEYTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHALLRAAPTDRAREIQSNEFGYATRRALEIEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 412          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 5.740e-63
Identity = 134/333 (40.24%), Postives = 182/333 (54.65%), Query Frame = 3
Query:  738 FPGHRWSAHWGSTLRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
             PG       G  ++ L ++ G+S E    +LPP  V WA     E G    P +  L  HD      R+ Q K+G  +++  +   +  L++LP    PP  D+ +G  E  + A AR RS  G G     RA   + AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H A  GHV FDER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:   90 IPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYACPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 421          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.080e-60
Identity = 135/334 (40.42%), Postives = 184/334 (55.09%), Query Frame = 3
Query:  738 FPGHRWSAHWGSTLRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVGE 1727
             PG       G  ++ L ++  +S E    +LPP  V WA     E G    P +  L  HD      R+ Q K+G  +++  +   +  L++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L ++ +LA +CP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG    E ++++A+  V E
Sbjct:  794 IPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPAGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVEE 1126          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 6.710e-60
Identity = 131/327 (40.06%), Postives = 179/327 (54.74%), Query Frame = 3
Query:  738 FPGHRWSAHWGSTLRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQV 1706
             PG       G  ++ L ++  +S E    +LPP  V WA     E G    P +  L  HD      R+ Q ++G  +++  +   +  L++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG L+DVTHADP +  HL  GSAT DG+AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG    E ++++
Sbjct:  313 IPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHELGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGTLLDVTHADPHAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 638          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 9.900e-60
Identity = 134/333 (40.24%), Postives = 183/333 (54.95%), Query Frame = 3
Query:  738 FPGHRWSAHWGSTLRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
             PG       G  ++ L ++ G+S E    +LPP  V WA     E G    P +  L  HD      R+ Q K+G  +++  +   +  L++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L I+ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG+    SEARK  H +R GHV  DER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:  837 IPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTEIQASEARKRQHYSRPGHVSLDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 1168          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 7.040e-58
Identity = 129/301 (42.86%), Postives = 171/301 (56.81%), Query Frame = 3
Query:  786 LAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDAPGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLG 1676
            L  + GVS +    +LPP  V WA     E G    P +  L  +D      R+ Q K+G  +++  +  L+  L +LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MD+V+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG+AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG
Sbjct:  484 LNREHGVSVKILKGILPPSWVEWAFEPPGETGRRQ-PTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGVLLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 783          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 6.380e-54
Identity = 119/269 (44.24%), Postives = 155/269 (57.62%), Query Frame = 3
Query:  960 VGNLLHEANITT----------LLSLLDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
            +GNLL     +T          L    ++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:    1 MGNLLRRGKPSTNWARRFTRYNLKGSWEHLPQQAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 269          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 9.190e-54
Identity = 113/243 (46.50%), Postives = 148/243 (60.91%), Query Frame = 3
Query: 1008 LDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
            L++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H AR G+V FDER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:    4 LEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 246          
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.480e-53
Identity = 114/243 (46.91%), Postives = 148/243 (60.91%), Query Frame = 3
Query: 1008 LDNLPPAGRPPGPDDQFGEIEPTDAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLAARCP-CFGAKD---VTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVEDGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHLERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLGRCREELLEQVASSVVG 1724
            L++LP    PP  D+ +G  E  + A AR RS  G G  A  RA P + AR +P  E V   RR L ++ +LA RCP C   ++   +TT HAR   R G  V+ ++PL + ++R L  L ++  VE G  FT +R+  MDIV+  G L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  H AR GHV FDER FKLT LAVE+FGRLG    E ++++A+  VG
Sbjct:    4 LEHLPHEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17423.4119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDZ4_9PHAE1.280e-6341.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE1.700e-6341.14Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ53_9PHAE5.740e-6340.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE3.080e-6040.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ7_9PHAE6.710e-6040.06Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KMQ2_9PHAE9.900e-6040.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTC7_9PHAE7.040e-5842.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K198_9PHAE6.380e-5444.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPW7_9PHAE9.190e-5446.50Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE1.480e-5346.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17423contigH-paniculata_contig17423:3788..5517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1731
Cds size1254
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.098047-UTR-H-paniculata_contig17423:3787..42631622929370.098047-UTR-H-paniculata_contig17423:3787..4263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17423 3788..4263 +
1691480833.8760579-UTR-H-paniculata_contig17423:3787..42631691480833.8760579-UTR-H-paniculata_contig17423:3787..4263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17423 3788..4263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.1176653-CDS-H-paniculata_contig17423:4263..55171622929370.1176653-CDS-H-paniculata_contig17423:4263..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17423 4264..5517 +
1691480833.8930051-CDS-H-paniculata_contig17423:4263..55171691480833.8930051-CDS-H-paniculata_contig17423:4263..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17423 4264..5517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17423.4119.1prot_H-paniculata_contig17423.4119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17423 4264..5517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17423.4119.1

>prot_H-paniculata_contig17423.4119.1 ID=prot_H-paniculata_contig17423.4119.1|Name=mRNA_H-paniculata_contig17423.4119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=418bp
MDVGEHPGTPPTSRRTSLLRRWLPGEPSQPPAPSVTLGHHVDRFRGVGTR
LGIEQVLVSNGREYVRHAAADNRGLVGTVGGNGCGHIFPGHRWSAHWGST
LRILAEQGGVSAEQQAAVLPPGLVAWAHGGRSEDGSLPIPNIDVLGGHDA
PGRNSRRLQAKVGNLLHEANITTLLSLLDNLPPAGRPPGPDDQFGEIEPT
DAAKARFRSMSGTGVLATQRAQPYENARTVPPAEDVLMERRFLDIKPYLA
ARCPCFGAKDVTTRHARISHRAGVLVDQYQPLLHVVTRLLKRLGIRSTVE
DGDSFTADRDYRMDIVVLAGELRDALINAYRVKGLLIDVTHADPQSAEHL
ERGSATIDGSAAAISEARKSAHCARRGHVPFDERCFKLTPLAVETFGRLG
RCREELLEQVASSVVGEQ
back to top

mRNA from alignment at H-paniculata_contig17423:3788..5517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17423.4119.1 ID=mRNA_H-paniculata_contig17423.4119.1|Name=mRNA_H-paniculata_contig17423.4119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1730bp|location=Sequence derived from alignment at H-paniculata_contig17423:3788..5517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTCGAGCGTCTGAGGGTGGAGCTATTGGCCTATCTGGACCATCTAGC GCTGGCAATGGGGGAGCTGACGAAAGAAAACTTACGGGCGATTTATTTCC TCGTGCACGAGCTAGCACGCATAGGAGTGCAGATCGACAACGCCAAGACG AACGTGGTGCCCCCAATGAACCACACCCCCACTGAAAGGGAGATCGCTGC GCTGGAGGCGATGGGCATCAGCGTCGCAGAGGGAGGGAGAACTGTGGTGG TGAGTACACCGATTGGGACCGACGCATTCGTTCAGCAGCACACCGTCACC GTAGTCAAGGAAAAGGGGGCAGAGCACCTTGCGCGCCTACTAGCTCATAC ACCGGAAAAACAAGCGGCGATGCTGATCGCCACAAAGTCCAGGGCCCTGA AGACCTGCTTCCTGGAGAGGGTGATGGAAGCCGCACTCTCCGGCCAAGCC TGCACACTAACCGACAATGGCGGACTATGGATGTTGGAGAACATCCTGGA ACACCCCCAACCAGCAGAAGAACAAGCCTTCTTCGACGCTGGCTGCCCGG CGAACCGTCTCAACCTCCTGCCCCATCAGTGACTCTAGGCCACCATGTCG ACCGGTTCAGAGGGGTTGGGACTCGCCTCGGCATAGAGCAGGTGCTGGTT AGCAACGGTAGGGAGTATGTGCGGCATGCTGCCGCAGATAATCGCGGACT CGTCGGGACCGTTGGGGGGAACGGGTGCGGGCACATCTTCCCGGGACACC GGTGGAGCGCTCATTGGGGGTCGACTCTCCGCATTTTGGCAGAACAGGGA GGAGTTAGCGCCGAACAACAAGCTGCGGTGCTGCCGCCTGGGCTGGTCGC ATGGGCTCACGGAGGACGGAGCGAAGACGGATCGCTGCCTATACCGAACA TCGATGTTCTGGGAGGGCACGATGCGCCAGGGAGGAACTCCCGTCGACTG CAAGCGAAGGTCGGTAATCTGCTTCACGAGGCCAACATAACGACCTTGCT CTCGCTGCTTGACAACCTACCCCCGGCCGGTAGGCCACCTGGCCCTGATG ACCAGTTCGGAGAGATCGAGCCGACCGACGCGGCTAAAGCGAGATTCCGC AGCATGTCGGGGACTGGAGTTCTGGCGACGCAACGGGCACAGCCCTACGA AAACGCCAGGACCGTACCTCCAGCAGAAGACGTGCTCATGGAGCGGAGGT TTCTTGACATTAAGCCCTACTTAGCTGCTCGATGCCCATGCTTCGGAGCG AAGGACGTCACCACACGCCACGCCCGAATTTCCCATCGAGCGGGGGTGCT AGTAGACCAATACCAACCGCTCCTACACGTGGTCACACGACTCCTGAAGC GACTGGGTATCAGGAGCACGGTAGAAGATGGAGACTCGTTTACGGCGGAC CGAGACTACCGGATGGACATTGTCGTCCTGGCAGGAGAGCTCCGAGATGC TCTCATCAACGCCTACCGCGTCAAGGGCCTCCTGATCGACGTCACGCACG CAGATCCCCAGTCGGCAGAGCACCTCGAGCGCGGGAGCGCTACCATCGAT GGCTCAGCCGCCGCCATTTCCGAGGCGCGCAAAAGCGCGCACTGCGCTCG AAGAGGACACGTGCCCTTCGACGAGCGTTGTTTCAAACTTACTCCCCTCG CGGTGGAAACCTTTGGCCGTCTGGGAAGGTGCAGAGAGGAGCTGCTTGAG CAGGTGGCATCCAGCGTGGTGGGTGAACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17423:3788..5517+

>mRNA_H-paniculata_contig17423.4119.1 ID=mRNA_H-paniculata_contig17423.4119.1|Name=mRNA_H-paniculata_contig17423.4119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at H-paniculata_contig17423:3788..5517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGTTGGAGAACATCCTGGAACACCCCCAACCAGCAGAAGAACAAG
CCTTCTTCGACGCTGGCTGCCCGGCGAACCGTCTCAACCTCCTGCCCCAT
CAGTGACTCTAGGCCACCATGTCGACCGGTTCAGAGGGGTTGGGACTCGC
CTCGGCATAGAGCAGGTGCTGGTTAGCAACGGTAGGGAGTATGTGCGGCA
TGCTGCCGCAGATAATCGCGGACTCGTCGGGACCGTTGGGGGGAACGGGT
GCGGGCACATCTTCCCGGGACACCGGTGGAGCGCTCATTGGGGGTCGACT
CTCCGCATTTTGGCAGAACAGGGAGGAGTTAGCGCCGAACAACAAGCTGC
GGTGCTGCCGCCTGGGCTGGTCGCATGGGCTCACGGAGGACGGAGCGAAG
ACGGATCGCTGCCTATACCGAACATCGATGTTCTGGGAGGGCACGATGCG
CCAGGGAGGAACTCCCGTCGACTGCAAGCGAAGGTCGGTAATCTGCTTCA
CGAGGCCAACATAACGACCTTGCTCTCGCTGCTTGACAACCTACCCCCGG
CCGGTAGGCCACCTGGCCCTGATGACCAGTTCGGAGAGATCGAGCCGACC
GACGCGGCTAAAGCGAGATTCCGCAGCATGTCGGGGACTGGAGTTCTGGC
GACGCAACGGGCACAGCCCTACGAAAACGCCAGGACCGTACCTCCAGCAG
AAGACGTGCTCATGGAGCGGAGGTTTCTTGACATTAAGCCCTACTTAGCT
GCTCGATGCCCATGCTTCGGAGCGAAGGACGTCACCACACGCCACGCCCG
AATTTCCCATCGAGCGGGGGTGCTAGTAGACCAATACCAACCGCTCCTAC
ACGTGGTCACACGACTCCTGAAGCGACTGGGTATCAGGAGCACGGTAGAA
GATGGAGACTCGTTTACGGCGGACCGAGACTACCGGATGGACATTGTCGT
CCTGGCAGGAGAGCTCCGAGATGCTCTCATCAACGCCTACCGCGTCAAGG
GCCTCCTGATCGACGTCACGCACGCAGATCCCCAGTCGGCAGAGCACCTC
GAGCGCGGGAGCGCTACCATCGATGGCTCAGCCGCCGCCATTTCCGAGGC
GCGCAAAAGCGCGCACTGCGCTCGAAGAGGACACGTGCCCTTCGACGAGC
GTTGTTTCAAACTTACTCCCCTCGCGGTGGAAACCTTTGGCCGTCTGGGA
AGGTGCAGAGAGGAGCTGCTTGAGCAGGTGGCATCCAGCGTGGTGGGTGA
ACAGATGGATGTTGGAGAACATCCTGGAACACCCCCAACCAGCAGAAGAA
CAAGCCTTCTTCGACGCTGGCTGCCCGGCGAACCGTCTCAACCTCCTGCC
CCATCAGTGACTCTAGGCCACCATGTCGACCGGTTCAGAGGGGTTGGGAC
TCGCCTCGGCATAGAGCAGGTGCTGGTTAGCAACGGTAGGGAGTATGTGC
GGCATGCTGCCGCAGATAATCGCGGACTCGTCGGGACCGTTGGGGGGAAC
GGGTGCGGGCACATCTTCCCGGGACACCGGTGGAGCGCTCATTGGGGGTC
GACTCTCCGCATTTTGGCAGAACAGGGAGGAGTTAGCGCCGAACAACAAG
CTGCGGTGCTGCCGCCTGGGCTGGTCGCATGGGCTCACGGAGGACGGAGC
GAAGACGGATCGCTGCCTATACCGAACATCGATGTTCTGGGAGGGCACGA
TGCGCCAGGGAGGAACTCCCGTCGACTGCAAGCGAAGGTCGGTAATCTGC
TTCACGAGGCCAACATAACGACCTTGCTCTCGCTGCTTGACAACCTACCC
CCGGCCGGTAGGCCACCTGGCCCTGATGACCAGTTCGGAGAGATCGAGCC
GACCGACGCGGCTAAAGCGAGATTCCGCAGCATGTCGGGGACTGGAGTTC
TGGCGACGCAACGGGCACAGCCCTACGAAAACGCCAGGACCGTACCTCCA
GCAGAAGACGTGCTCATGGAGCGGAGGTTTCTTGACATTAAGCCCTACTT
AGCTGCTCGATGCCCATGCTTCGGAGCGAAGGACGTCACCACACGCCACG
CCCGAATTTCCCATCGAGCGGGGGTGCTAGTAGACCAATACCAACCGCTC
CTACACGTGGTCACACGACTCCTGAAGCGACTGGGTATCAGGAGCACGGT
AGAAGATGGAGACTCGTTTACGGCGGACCGAGACTACCGGATGGACATTG
TCGTCCTGGCAGGAGAGCTCCGAGATGCTCTCATCAACGCCTACCGCGTC
AAGGGCCTCCTGATCGACGTCACGCACGCAGATCCCCAGTCGGCAGAGCA
CCTCGAGCGCGGGAGCGCTACCATCGATGGCTCAGCCGCCGCCATTTCCG
AGGCGCGCAAAAGCGCGCACTGCGCTCGAAGAGGACACGTGCCCTTCGAC
GAGCGTTGTTTCAAACTTACTCCCCTCGCGGTGGAAACCTTTGGCCGTCT
GGGAAGGTGCAGAGAGGAGCTGCTTGAGCAGGTGGCATCCAGCGTGGTGG
GTGAACAG
back to top