mRNA_H-paniculata_contig1741.4109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1741.4109.1
Unique NamemRNA_H-paniculata_contig1741.4109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 5.500e-35
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEEQV 207
            IS+S+MIDADWTIGRERAD+AGKILADALLNREQGCRPVTL+GTSLG RLIFACLEEIARRHELWEEQ+
Sbjct:  679 ISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQM 747
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.730e-24
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWE 198
            +++++ ID+DW IG ERAD AGK+LA  LL+REQG RPVTLIGTS+G RL+F+CLEE+ RRHELWE
Sbjct:   58 VALADYIDSDWAIGCERADKAGKVLAGILLSREQGTRPVTLIGTSIGARLMFSCLEEMVRRHELWE 123
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A7S2URA8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URA8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.270e-17
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEEQ 204
            ++ +NMID  WT+  ERAD AG+ LA +LL+   G RPVTL+G S+G R I+ACL+E+A+  E WEEQ
Sbjct:   51 VAAANMIDGTWTLAIERADEAGEELAKSLLHSTAGHRPVTLVGFSMGARTIYACLKELAKHQEKWEEQ 118
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: UPI00065B96BA (transmembrane and coiled-coil domain-containing protein 4 isoform X1 n=5 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B96BA)

HSP 1 Score: 80.1 bits (196), Expect = 6.250e-16
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARR 183
            +S SN+ID  W++  +RA  AG++LA+ LL+REQG RPVTLIG SLG R+IF+CLEE+ +R
Sbjct:  389 VSASNIIDNPWSVALQRAQAAGRMLAEVLLSREQGNRPVTLIGYSLGARVIFSCLEELCKR 449
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A2C9JQT8_BIOGL (Uncharacterized protein n=5 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JQT8_BIOGL)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-15
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEEQ 204
            IS +N ID  W++  +RA  AGK LA+ LL REQG RPVTLIG SLG R+IF+CLEE+++R +  E +
Sbjct:  359 ISAANFIDNPWSVALQRAQTAGKALAEVLLAREQGNRPVTLIGFSLGARVIFSCLEELSKRKDSEETE 426
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A7S2RYC4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.510e-15
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEEQV 207
            I   + ID  WT+  ERAD+AG++LA+ LL R  G RPVTLIG S+G RLIF+CL  + ++HE W  +V
Sbjct:  250 IKAFDSIDPIWTLACERADLAGQLLAETLLERAHGSRPVTLIGYSMGARLIFSCLRTLRQKHETWLAEV 318
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A7S2WFL1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFL1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.600e-15
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEEQV 207
            I   + ID  WT+  ERAD+AG++LA+ LL R  G RPVTLIG S+G RLIF+CL  + ++HE W  +V
Sbjct:  823 IKAFDSIDPIWTLACERADLAGQLLAETLLERAHGSRPVTLIGYSMGARLIFSCLRTLRQKHETWLAEV 891
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: W7TZH7_9STRA (Uncharacterized protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.180e-15
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEE 201
            +  ++MID  WTI  E+AD AG++LA  L+ +E+G RP+ LIG S+G RLI ACL E+AR H  WE+
Sbjct:  656 LQAADMIDNSWTIACEKADRAGQLLAQILVRKERGHRPIVLIGFSMGARLIMACLSELARIHNSWED 722
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A2T7PU77_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PU77_POMCA)

HSP 1 Score: 77.4 bits (189), Expect = 5.530e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARR 183
            +SVSN+ID  W++  +RA  AGK LA+ LL REQG RPVTLIG SLG R+IF CLEE+++R
Sbjct:  393 LSVSNIIDNPWSVSMQRAVSAGKQLAEVLLAREQGKRPVTLIGYSLGARVIFYCLEEMSKR 453
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BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Match: A0A7S0CK56_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK56_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.080e-15
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 ISVSNMIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACLEEIARRHELWEEQ 204
            ++ ++MID  WT+  ERAD AG  LA  LL  E G RPVTL+G S+G RLI++CL+E+ R   +WE Q
Sbjct:   43 VNAAHMIDGTWTLAIERADEAGAELARCLLESEAGHRPVTLVGFSMGARLIYSCLKELDRHQTIWENQ 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1741.4109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP69_ECTSI5.500e-3591.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4D9_9STRA7.730e-2468.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2URA8_9STRA8.270e-1754.41Hypothetical protein n=1 Tax=Attheya septentrional... [more]
UPI00065B96BA6.250e-1659.02transmembrane and coiled-coil domain-containing pr... [more]
A0A2C9JQT8_BIOGL1.160e-1555.88Uncharacterized protein n=5 Tax=Biomphalaria glabr... [more]
A0A7S2RYC4_9STRA1.510e-1552.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WFL1_9STRA1.600e-1552.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TZH7_9STRA2.180e-1552.24Uncharacterized protein n=5 Tax=Nannochloropsis ga... [more]
A0A2T7PU77_POMCA5.530e-1562.30Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A7S0CK56_9STRA7.080e-1551.47Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1741contigH-paniculata_contig1741:23652..24105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue4.6e-28
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
KEGG koko:K14773
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size210
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1741.4109.1prot_H-paniculata_contig1741.4109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1741 23667..24105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.2847304-UTR-H-paniculata_contig1741:23651..236661622929369.2847304-UTR-H-paniculata_contig1741:23651..23666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1741 23652..23666 +
1691480833.535914-UTR-H-paniculata_contig1741:23651..236661691480833.535914-UTR-H-paniculata_contig1741:23651..23666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1741 23652..23666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.296279-CDS-H-paniculata_contig1741:23666..237531622929369.296279-CDS-H-paniculata_contig1741:23666..23753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1741 23667..23753 +
1691480833.5468109-CDS-H-paniculata_contig1741:23666..237531691480833.5468109-CDS-H-paniculata_contig1741:23666..23753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1741 23667..23753 +
1622929369.3084307-CDS-H-paniculata_contig1741:23997..241051622929369.3084307-CDS-H-paniculata_contig1741:23997..24105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1741 23998..24105 +
1691480833.562322-CDS-H-paniculata_contig1741:23997..241051691480833.562322-CDS-H-paniculata_contig1741:23997..24105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1741 23998..24105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1741.4109.1

>prot_H-paniculata_contig1741.4109.1 ID=prot_H-paniculata_contig1741.4109.1|Name=mRNA_H-paniculata_contig1741.4109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MIDADWTIGRERADIAGKILADALLNREQGCRPVTLIGTSLGGRLIFACL
EEIARRHELWEEQV*
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mRNA from alignment at H-paniculata_contig1741:23652..24105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1741.4109.1 ID=mRNA_H-paniculata_contig1741.4109.1|Name=mRNA_H-paniculata_contig1741.4109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at H-paniculata_contig1741:23652..24105+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATCAGTTTCCAACATGATCGATGCCGACTGGACGATCGGCCGGGAACG
AGCAGACATTGCCGGGAAGATTCTCGCAGACGCCCTTCTCAACAGAGAGC
AGGTGTGTTTCAAACGCCACATATCACAGGGTGTAGTTAGGGGTCCTGAA
GCTGTAGCTGGATATTTGCCTGAGCTGAGTGGTGGATCCTTGACGCAGTA
CACGTCTAGGTGCGTGTACCGCATCCCACGAGAAAGTTCTTGTTGGATGG
TGCAGGTCGTTCTCGTATAATTTAGCGATTTTGAAGTGTTGGATACTAAA
TGATCGTGGTTTTGTCGACGTGGTTTGTTTTGTCCGTGTATTGCAGGGCT
GCCGTCCTGTGACGTTGATAGGCACGTCACTGGGGGGACGACTAATCTTC
GCGTGCTTGGAAGAGATTGCCCGGCGCCATGAGCTTTGGGAAGAGCAGGT
ATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1741:23652..24105+

>mRNA_H-paniculata_contig1741.4109.1 ID=mRNA_H-paniculata_contig1741.4109.1|Name=mRNA_H-paniculata_contig1741.4109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig1741:23652..24105+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGATGCCGACTGGACGATCGGCCGGGAACGAGCAGACATTGCCGG
GAAGATTCTCGCAGACGCCCTTCTCAACAGAGAGCAGATGATCGATGCCG
ACTGGACGATCGGCCGGGAACGAGCAGACATTGCCGGGAAGATTCTCGCA
GACGCCCTTCTCAACAGAGAGCAGGGCTGCCGTCCTGTGACGTTGATAGG
CACGTCACTGGGGGGACGACTAATCTTCGCGTGCTTGGAAGAGATTGCCC
GGCGCCATGAGCTTTGGGAAGAGCAGGTATAGGGCTGCCGTCCTGTGACG
TTGATAGGCACGTCACTGGGGGGACGACTAATCTTCGCGTGCTTGGAAGA
GATTGCCCGGCGCCATGAGCTTTGGGAAGAGCAGGTATAG
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