mRNA_H-paniculata_contig174.4103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig174.4103.1
Unique NamemRNA_H-paniculata_contig174.4103.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig174.4103.1 vs. uniprot
Match: A0A6H5J936_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J936_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.290e-18
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 2 
Query:    8 STNPEMDPGRLARGALINAALSVGAHVTRDRQRATVSADRARQCLKEIFDVPSEEAASAFMCLAYYNT 211
            S  P+ D  R AR +LI AALSVGA VTRD+  A   A+ ARQ LKEIFDVPSEEAASAF+CLAY+NT
Sbjct:  521 SGGPDTDFERFARSSLIEAALSVGALVTRDQVAAVRFAENARQLLKEIFDVPSEEAASAFLCLAYFNT 588
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BLAST of mRNA_H-paniculata_contig174.4103.1 vs. uniprot
Match: D8LRD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD8_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.490e-17
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:    8 STNPEMDPGRLARGALINAALSVGAHVTRDRQRATVSADRARQCLKEIFDVPSEEAASAFMCLAYYNT 211
            S   + D  R AR +LI AALSVGA VTRDR  A   A+ ARQ LKEIFDVPSEEAASAF+CLAY+NT
Sbjct:  324 SGGSDTDFERFARSSLIEAALSVGALVTRDRVAAVGFAENARQLLKEIFDVPSEEAASAFLCLAYFNT 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig174.4103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J936_9PHAE4.290e-1867.65Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LRD8_ECTSI1.490e-1767.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig174contigH-paniculata_contig174:7336..9056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.484268-CDS-H-paniculata_contig174:7336..75131622929368.484268-CDS-H-paniculata_contig174:7336..7513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 7337..7513 -
1691480833.1636164-CDS-H-paniculata_contig174:7336..75131691480833.1636164-CDS-H-paniculata_contig174:7336..7513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 7337..7513 -
1622929368.499922-CDS-H-paniculata_contig174:9020..90561622929368.499922-CDS-H-paniculata_contig174:9020..9056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 9021..9056 -
1691480833.1780157-CDS-H-paniculata_contig174:9020..90561691480833.1780157-CDS-H-paniculata_contig174:9020..9056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 9021..9056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig174.4103.1prot_H-paniculata_contig174.4103.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig174 7337..9056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig174.4103.1

>prot_H-paniculata_contig174.4103.1 ID=prot_H-paniculata_contig174.4103.1|Name=mRNA_H-paniculata_contig174.4103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
RLVHKSRDGSWEVGSWRSHQCCPECRCARDERSTAGHCVCRPRSTVPEGD
LRRSERGGGERVHVPCLLQHP
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mRNA from alignment at H-paniculata_contig174:7336..9056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig174.4103.1 ID=mRNA_H-paniculata_contig174.4103.1|Name=mRNA_H-paniculata_contig174.4103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1721bp|location=Sequence derived from alignment at H-paniculata_contig174:7336..9056- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCTGGTCCACAAATCCCGAGATGGATCCTGGGAGGTCGGTATTAAGGC
GGCAATCGCCTACACTTCCACCATAAAACTGAGATACGATCGCTGTCGTG
GCGTGCAGCGCGGTTTTTGCCCCCAAAAAATGCATCGAGTGAAATTGACA
TTGGTAAAAACTTTGGAACTTTTCCACGTGCATAAGAGTTTTAGAACCCT
GAAACGATCACTTGTTTTGCGATATCACGGGTGCGGCGAAATCGCGCACA
TTATGGTGACCTGTGGTCTTCACTTGCTGGCAGACGTCTATGGCGAACGA
ATTGCCGTAACCTCTGGTTCGAAGAGGCGAGATGTTCTCTCGCCCGGTTC
TCAAACGTACGCTCCTCTGCACCCAGTCCAAACCTAAAACGATGAGGCTC
CGGCTAGGCTCCCAACCCTTGACTCTTATTTCCGCCGCAAATGATTCAAT
TTTTAATATACTCGAGGGCATGACTGCTAGAAAAAGTGAAATAAACGAAC
CTGGTTGCTTGATATATCCTGAAAAATTTAAAGGGGAGCTTTATTTCCTG
TTTGGTACTAGGTGGTCCCGCGGGCATACATGTCGCGAAAGTACATATTC
CTCAGTGCGGTTTTTTCTACGGTGCAGTGTGGGAGATGGCCTTGTCCTAC
GAGTGAAGGATGAGCTATTTTGGCTGCATGTGCAGCTGGTGGTTTCAAAA
TGCCCACTAGTTTATGCGAAAATCATTCCTGCACGCGTAAAATTGTCTTT
TCTCAATGAATTTTGCAGTCAACGGCGATTCGTATGGACCCTTTGTCGCC
AAGTTACAGGCATTATGTTTATGACAGCTACAAAGAAGATATCAAACGTC
CAGCAATGGAGCCAAGAGAAGTATCTTGTTGCAAAATATGTTTCTTTTTA
GTCGATCGTTTGTCTTCAATTGCTCATTGAAATAGCTGACATTGCACCAT
AGCCACCGCCGTAGCTGCATGTATATATCCTACCTCCGTTGGCGAAAATG
TAGAGGTACACAGCTGCGTGTCGTTCTGGCATAGGCGACAAAAATCGCAT
ACGCTTGTCATTTTCCAGCTAAGAAGAACCACCGTGATCAGAATCGCCAT
CAATAGTTAACCAAACACGTCATTCATGTGGTACGTTTACTTGTTAAGCA
ATCGTGCATGTGCACGGTCATGGTACGTTTAAGAGAGCCTTCCGTCTTGG
AATAGTTTATGACCCTGAATGGACCACGTCTAAGTCGCGCGTTCAGCTTC
AACCTTACTTGGAGTCACGTTCAAAAATGTTCAATAATTACCAATCGTGG
TATCGTACGAAATTCGCTTGTTGTTATGTTGCAGTTGTAATCCTTGATGG
GTCAGGTTAGGGTCGAAGAAGCTGTTGTTCTCGTTACCCCCCCCGTCTCC
TTTTGCATTGGAGAGAGCGAGGGATCTCAGTTGGAGCAACGGTCCGCTCC
TTCGACGATGTATGATGAGTGATCTTGACAGCTGAGGTACGAAATCATGA
GCCCGCCCCTTGTGCGCCTCGCGTTTGTTTACCCGGCCTGCAGGTTGGCT
CGTGGCGCTCTCATCAATGCTGCCCTGAGTGTCGGTGCGCACGTGACGAG
AGATCGACAGCGGGCCACTGTGTCTGCCGACCGCGCTCGACAGTGCCTGA
AGGAGATCTTCGACGTTCCGAGCGAGGAGGCGGCGAGCGCGTTCATGTGC
CTTGCTTACTACAACACCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig174:7336..9056-

>mRNA_H-paniculata_contig174.4103.1 ID=mRNA_H-paniculata_contig174.4103.1|Name=mRNA_H-paniculata_contig174.4103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig174:7336..9056- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCTGGTCCACAAATCCCGAGATGGATCCTGGGAGCGGCTGGTCCACAA
ATCCCGAGATGGATCCTGGGAGGTTGGCTCGTGGCGCTCTCATCAATGCT
GCCCTGAGTGTCGGTGCGCACGTGACGAGAGATCGACAGCGGGCCACTGT
GTCTGCCGACCGCGCTCGACAGTGCCTGAAGGAGATCTTCGACGTTCCGA
GCGAGGAGGCGGCGAGCGCGTTCATGTGCCTTGCTTACTACAACACCCAG
TTGGCTCGTGGCGCTCTCATCAATGCTGCCCTGAGTGTCGGTGCGCACGT
GACGAGAGATCGACAGCGGGCCACTGTGTCTGCCGACCGCGCTCGACAGT
GCCTGAAGGAGATCTTCGACGTTCCGAGCGAGGAGGCGGCGAGCGCGTTC
ATGTGCCTTGCTTACTACAACACCCA
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