mRNA_H-paniculata_contig10628.407.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10628.407.1
Unique NamemRNA_H-paniculata_contig10628.407.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10628.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10628contigH-paniculata_contig10628:224..3639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size949
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10628.407.1prot_H-paniculata_contig10628.407.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10628 329..3623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.1601412-UTR-H-paniculata_contig10628:223..3281622928767.1601412-UTR-H-paniculata_contig10628:223..328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10628 224..328 -
1691480611.470388-UTR-H-paniculata_contig10628:223..3281691480611.470388-UTR-H-paniculata_contig10628:223..328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10628 224..328 -
1622928767.2707117-UTR-H-paniculata_contig10628:3623..36391622928767.2707117-UTR-H-paniculata_contig10628:3623..3639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10628 3624..3639 -
1691480611.525928-UTR-H-paniculata_contig10628:3623..36391691480611.525928-UTR-H-paniculata_contig10628:3623..3639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10628 3624..3639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.1770833-CDS-H-paniculata_contig10628:328..7151622928767.1770833-CDS-H-paniculata_contig10628:328..715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 329..715 -
1691480611.4784026-CDS-H-paniculata_contig10628:328..7151691480611.4784026-CDS-H-paniculata_contig10628:328..715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 329..715 -
1622928767.1948414-CDS-H-paniculata_contig10628:947..10111622928767.1948414-CDS-H-paniculata_contig10628:947..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 948..1011 -
1691480611.485564-CDS-H-paniculata_contig10628:947..10111691480611.485564-CDS-H-paniculata_contig10628:947..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 948..1011 -
1622928767.2093122-CDS-H-paniculata_contig10628:1059..10971622928767.2093122-CDS-H-paniculata_contig10628:1059..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 1060..1097 -
1691480611.496312-CDS-H-paniculata_contig10628:1059..10971691480611.496312-CDS-H-paniculata_contig10628:1059..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 1060..1097 -
1622928767.2227192-CDS-H-paniculata_contig10628:2177..22431622928767.2227192-CDS-H-paniculata_contig10628:2177..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 2178..2243 -
1691480611.5038347-CDS-H-paniculata_contig10628:2177..22431691480611.5038347-CDS-H-paniculata_contig10628:2177..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 2178..2243 -
1622928767.2408788-CDS-H-paniculata_contig10628:2700..29281622928767.2408788-CDS-H-paniculata_contig10628:2700..2928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 2701..2928 -
1691480611.511393-CDS-H-paniculata_contig10628:2700..29281691480611.511393-CDS-H-paniculata_contig10628:2700..2928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 2701..2928 -
1622928767.2557614-CDS-H-paniculata_contig10628:3578..36231622928767.2557614-CDS-H-paniculata_contig10628:3578..3623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 3579..3623 -
1691480611.518664-CDS-H-paniculata_contig10628:3578..36231691480611.518664-CDS-H-paniculata_contig10628:3578..3623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10628 3579..3623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10628.407.1

>prot_H-paniculata_contig10628.407.1 ID=prot_H-paniculata_contig10628.407.1|Name=mRNA_H-paniculata_contig10628.407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MFYQTRGMKLTQSSQVVIVLVIGILIDLGHARDLPHLLTSRFGILAGKSA
CEGFLDSACRVFRYVQEFTGFSHPLELVLCENGEIKVYVSPFIHLKEFYE
DKDNTMFLQRLFQLHANQTIDSLKMIQNAANLLLTAAASPPLLTLAESGM
GRYAGSYQYHQVNLLSPPVPEAADGQLTAAVALSVRSFLAPTGVGGRSIE
LRTQDRFGEDLRSAIRSLSLGPEAQKPSILARAAISAAVKRQAKPEADIM
LYPARLSALAVNSVRLISSTKNKDI*
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mRNA from alignment at H-paniculata_contig10628:224..3639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10628.407.1 ID=mRNA_H-paniculata_contig10628.407.1|Name=mRNA_H-paniculata_contig10628.407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3416bp|location=Sequence derived from alignment at H-paniculata_contig10628:224..3639- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTCCCAGTGTGTTATGTTTTACCAGACACGTGGCATGAAGCTTACAC
AATCTTCTCAGGTACGAGGAATACAGGTGCCCAAAAAGGAAACTAATCGT
GGAGTGGATTTGTTATGTGGTTGGTGCATCGATCGTTACCCGTTGTAAAT
CAAGATTCAGCGGTTGAAGGCGTAGCGGGGTATAGCTCTGGTGATGGTAG
TGGCGGTGGTTGTCATGCGTTTGACAGCAAAACCCAAGCGTGGATTATTC
TATATGTATGAATGTTGCGGTATAATAGGCTGAACCGTAGACGTGGTCGT
CAAAACCTGATTTGGCCTTGCTCCGCGCCGTGCATCATCGTTGTCCATAG
ACATGGCCTCTTGTGTAGTGCTGCACAGATCCTACCTGTACAGTAGGAGG
CCGTGCTGGCTGCTTTTGAGCTTTGAAAAAGAGATGCGACAAACGTGTAG
AAGTTTATAAGGGAACTCAATCCAAATTTATTACGATCGTGTACACTGCC
CGTGTTGGTTTCGACTTCTTGACGTGGGTATTTCACAAATGTTGAGCGCA
ACATGGTAGTCTTGAAAATATGATGATTTCACACACGTAGTGGTGTACAT
GCCACCTTGAGTGCCCGCCGCCCGTCCCTGCCCGGTCCTCATCTCATCCC
ATCCTCACGTCTCCGCTCTTGCTCGCTCGACGACCCGCGGATCGTGCGCG
TGCCTCTCTAGGTAGTCATCGTGCTGGTGATAGGGATATTGATAGACCTG
GGTCATGCGCGCGACTTACCGCACCTGCTTACCTCGCGATTCGGGATTTT
GGCCGGCAAGAGTGCCTGCGAAGGCTTTTTGGATTCTGCGTGTCGAGTGT
TTCGATATGTGCAGGAATTTACCGGGTTCAGCCACCCTCTCGAGCTGGTA
TTGTGTGAGAATGGAGAAATCAAGGTGTACGTTAGTCCGGTGAGCTACTC
TGAAGATGAGCATGAGATCTAACGGTCTCTACTTTTGGGGGGGGTTAACT
GATGTGTTGTTTTCGTGATGACACATGAACGTTTGGTGAATACAACCGAT
GGCTCAGACTTTCGCGCACGGCAAAAACTGCACGCATTTACCTTCTGTTT
TTTTGTTTTTTTTCTTCGGAGTGTCTCATGTCAGCCTTATTGATTTGCCA
ATCTAAGGTCATACGACCGGCAGCTACCCGCAGGCTCAAATCGTGCGCCC
TTGGAGTGCACCGATCCTTTGTGGACAGGGATTTTGGCGGGGAAGTTTAT
AGACAATGAACATACATAGTTGTGGCCTAGCTACAGTCGGGCCATGGTCA
TTATTGCTCTGCTGTCTTTGGTAAGATTTCTTGAGAGACCTCGTATGTAC
GTCGCTCGTTGTTCCACTGCGTTGTGCTGATATGACAATGATACAGTTTA
TTCACTTGAAGGAGTTTTACGAAGATAAGGATAACACGATGTTCCTGCAA
CGTCTCTTTCAGGTGAGGTGCTAGATCTGATTAGTCCTAAGAGACGATAC
GCATCCATTTCTGCTTCAGTCCGTTTTGATGTCGAACTCTTTGTTGGAAT
ATGGACATCTACTTTCTGTTGCCATCTCTTGTAGTCCGATTATCGGTCAC
CAGCTCAATGCACACGCGGCGAGTTTTAGTAAAGTGGGGAGACTATTCTA
TGATTTGAGATCGGAGGCTTGCCCCTCTCTCTTCACTCTCTTCTGCTTCC
CCTTGCTTTGGCCACCTAAGTGCCACTCTTTCAAAAACGATCTTTCTTTC
TATACAAGTGTGCTTAACAGCTACTTCATGCCGTCTCTGCGCTTCTCTCC
GAGACATCAAGATACAGTCATACTGCCTTCCAACATCTTGTGTTCGTGCA
AAAACGCATGAAGTTGTCTCGTCGCCATCCGCCAGCACAACGCTATCTTG
AGCAACTATTATCATAGTGTGATTCGTGGTTCCGTTGAGGTTGGCGCCCA
GTTAATTCGCCATATTACTCTGTATGGATAGGTGGCTCTGTACTCTAGTC
TCGAAACATTTGTCATGTGTTGAATGCGTGATAGCGTGCTCTATAGTACG
TCGACCGAAATGGACTGCTGGAGAATGGTCACCTTTTTGTGTTGGCATCG
TGCGGAACAGTATCGGGTTCCAGACGTTAGCGAGTTCAACCGAGCCGTCA
CTCTCCTCCCTAAGTTGAACGCGTGTTAGTTGATAGCCTTGGCCCTGACA
GCATTGAGAGACATATTATTGTGTTTGTGTCATCAGGTGGTCGAGTGTAC
TCCTACTGGACATGAGATAACGTAACATGAAGCCGTCGCTTCACCAAGTG
TTGTACTATGTAGCTGTATGCTTCCCAACGTAAGGGCGACCTAACCATGG
ATCTTCACGTCGGGATATTGAGGCTGTATGTGCACCTCATGTTTCCGAAG
CGCTCCACGGTCCGCCGTATCCACTACATGCCTTTTGATCTAGACTGATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTGTTTACTCTCGAATTGA
CGTGGTCTTGTCAATTAACTTTGTGTGCTTTCTTGTTGGAAGCTCCATGC
CAATCAAACGATCGACAGCCTCAAGATGATTGACATCGAGAACACCATGG
ATTGCCATCGTTCTTCAACAAGGCTCAACCAGAATGCTGCCAATCTGCTT
TTGACCGCGGCGGCCAGCCCGCCTCTTCTTACACTTGCCGAGGTGCGTTC
GTCCAGCGTGCCCGGCTCTTTCACAGAAGTATCTGTGAGGACGACAGCGA
GGAGAATTAAATCACTTTCTGTCATAGGGCACTACTTGAGCGTCACTGGT
TGTTGCTCATTTTCTAGCGCAGCACGATGAAAGCAAACCTCCCATACGTG
GCATCACACCGCTCTTTTCTCTTTTCGTCGTACCTCCAGTCCCTTTCGTT
CCCTCCCTTGCTGCGTGGTATCAGAGCGGAATGGGTCGCTACGCTGGGAG
CTACCAATACCACCAAGTGAACCTGCTGTCACCCCCCGTGCCGGAAGCCG
CAGATGGGCAACTGACAGCAGCGGTAGCACTCTCGGTCCGAAGTTTTTTG
GCTCCAACCGGAGTGGGGGGGCGATCTATTGAGCTTCGAACCCAAGATCG
ATTTGGAGAAGATCTCCGCAGCGCAATCAGGAGCCTCTCCCTAGGACCGG
AAGCGCAAAAGCCCTCGATTTTGGCCAGGGCCGCCATCTCCGCAGCCGTA
AAGCGACAGGCAAAACCTGAGGCGGACATCATGCTGTATCCTGCGAGGCT
AAGTGCCCTAGCCGTGAACAGCGTGCGCCTCATCTCTTCTACGAAAAACA
AGGACATTTAACCTGATCGATTTGTCTACTTTTCTTAGGGAAAAGCGTTC
TTGGCGCAATTACCGCACCAAAATCTCGGTGTTTGTCGGCTATATGGCGA
ATAACGAATGGCTTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig10628:224..3639-

>mRNA_H-paniculata_contig10628.407.1 ID=mRNA_H-paniculata_contig10628.407.1|Name=mRNA_H-paniculata_contig10628.407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig10628:224..3639- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTACCAGACACGTGGCATGAAGCTTACACAATCTTCTCAGATGTT
TTACCAGACACGTGGCATGAAGCTTACACAATCTTCTCAGGTAGTCATCG
TGCTGGTGATAGGGATATTGATAGACCTGGGTCATGCGCGCGACTTACCG
CACCTGCTTACCTCGCGATTCGGGATTTTGGCCGGCAAGAGTGCCTGCGA
AGGCTTTTTGGATTCTGCGTGTCGAGTGTTTCGATATGTGCAGGAATTTA
CCGGGTTCAGCCACCCTCTCGAGCTGGTATTGTGTGAGAATGGAGAAATC
AAGGTGTACGTTAGTCCGGTAGTCATCGTGCTGGTGATAGGGATATTGAT
AGACCTGGGTCATGCGCGCGACTTACCGCACCTGCTTACCTCGCGATTCG
GGATTTTGGCCGGCAAGAGTGCCTGCGAAGGCTTTTTGGATTCTGCGTGT
CGAGTGTTTCGATATGTGCAGGAATTTACCGGGTTCAGCCACCCTCTCGA
GCTGGTATTGTGTGAGAATGGAGAAATCAAGGTGTACGTTAGTCCGTTTA
TTCACTTGAAGGAGTTTTACGAAGATAAGGATAACACGATGTTCCTGCAA
CGTCTCTTTCAGTTTATTCACTTGAAGGAGTTTTACGAAGATAAGGATAA
CACGATGTTCCTGCAACGTCTCTTTCAGCTCCATGCCAATCAAACGATCG
ACAGCCTCAAGATGATCTCCATGCCAATCAAACGATCGACAGCCTCAAGA
TGATCCAGAATGCTGCCAATCTGCTTTTGACCGCGGCGGCCAGCCCGCCT
CTTCTTACACTTGCCGAGCCAGAATGCTGCCAATCTGCTTTTGACCGCGG
CGGCCAGCCCGCCTCTTCTTACACTTGCCGAGAGCGGAATGGGTCGCTAC
GCTGGGAGCTACCAATACCACCAAGTGAACCTGCTGTCACCCCCCGTGCC
GGAAGCCGCAGATGGGCAACTGACAGCAGCGGTAGCACTCTCGGTCCGAA
GTTTTTTGGCTCCAACCGGAGTGGGGGGGCGATCTATTGAGCTTCGAACC
CAAGATCGATTTGGAGAAGATCTCCGCAGCGCAATCAGGAGCCTCTCCCT
AGGACCGGAAGCGCAAAAGCCCTCGATTTTGGCCAGGGCCGCCATCTCCG
CAGCCGTAAAGCGACAGGCAAAACCTGAGGCGGACATCATGCTGTATCCT
GCGAGGCTAAGTGCCCTAGCCGTGAACAGCGTGCGCCTCATCTCTTCTAC
GAAAAACAAGGACATTTAAAGCGGAATGGGTCGCTACGCTGGGAGCTACC
AATACCACCAAGTGAACCTGCTGTCACCCCCCGTGCCGGAAGCCGCAGAT
GGGCAACTGACAGCAGCGGTAGCACTCTCGGTCCGAAGTTTTTTGGCTCC
AACCGGAGTGGGGGGGCGATCTATTGAGCTTCGAACCCAAGATCGATTTG
GAGAAGATCTCCGCAGCGCAATCAGGAGCCTCTCCCTAGGACCGGAAGCG
CAAAAGCCCTCGATTTTGGCCAGGGCCGCCATCTCCGCAGCCGTAAAGCG
ACAGGCAAAACCTGAGGCGGACATCATGCTGTATCCTGCGAGGCTAAGTG
CCCTAGCCGTGAACAGCGTGCGCCTCATCTCTTCTACGAAAAACAAGGAC
ATTTAA
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