prot_H-paniculata_contig17295.4060.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17295.4060.1
Unique Name	prot_H-paniculata_contig17295.4060.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	62

Homology

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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.700e-9
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0

Query:    3 QVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDAT 51
            Q AKLLGD ++P+FYP LFA VA  L+ FGV VF RI  RAED G++A+
Sbjct:  430 QAAKLLGDVTVPSFYPALFASVAGLLEAFGVMVFERIRDRAEDVGEEAS 478

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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: A0A6H5JSK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0

Query:    5 AKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDAT 51
            AKLLGD ++P+FYP LFA VA  L+ FGV VF RI  RAED G++A+
Sbjct:   31 AKLLGDVTVPSFYPALFASVAGLLEAFGVMVFERIRDRAEDVGEEAS 77

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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: A0A0M0KPI5_9EUKA (Upf0505 protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KPI5_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-6
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 0

Query:    3 QVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDATLGTTPS 57
            QV+K+LGDTS PTF+   FA+VA  L  FG  V+ R+L + + PG     G TP+
Sbjct:  253 QVSKMLGDTSFPTFFXXXFAVVAEILDAFGELVYERVLDKGKPPGKKLPPGYTPA 307

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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: A0A7S4USV2_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4USV2_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 4.430e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0

Query:    3 QVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAE 44
            Q+AKLLGD+S+PTFYP  F +V   L  FG  VF RI +RA+
Sbjct:  242 QMAKLLGDSSVPTFYPSKFVVVTEILDTFGKLVFERIRQRAK 283

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D8LLV5_ECTSI	3.700e-9	61.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JSK9_9PHAE	1.770e-8	61.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A0M0KPI5_9EUKA	1.030e-6	47.27	Upf0505 protein n=1 Tax=Chrysochromulina tobinii T...	[more]
A0A7S4USV2_9EUKA	4.430e-5	57.14	Hypothetical protein n=1 Tax=Paramoeba aestuarina ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 41..61
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17295	contig	H-paniculata_contig17295:5164..5349 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17295.4060.1	mRNA_H-paniculata_contig17295.4060.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17295 5164..5349 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17295.4060.1 ID=prot_H-paniculata_contig17295.4060.1|Name=mRNA_H-paniculata_contig17295.4060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MQQVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDA
TLGTTPSAGEG*